Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3E5E:A6:A28
Extra
PDB:
ATOM 1 O3' C A 5 -5.236 17.998 -8.715 1.00 38.47 O
ATOM 2 P G A 6 -4.199 17.003 -9.431 1.00 39.78 P
ATOM 3 OP1 G A 6 -3.913 15.881 -8.509 1.00 38.91 O
ATOM 4 OP2 G A 6 -3.078 17.821 -9.960 1.00 39.77 O
ATOM 5 O5' G A 6 -4.995 16.539 -10.748 1.00 39.25 O
ATOM 6 C5' G A 6 -6.008 15.541 -10.777 1.00 38.19 C
ATOM 7 C4' G A 6 -6.510 15.414 -12.206 1.00 37.47 C
ATOM 8 O4' G A 6 -6.771 16.739 -12.720 1.00 36.86 O
ATOM 9 C3' G A 6 -5.487 14.896 -13.195 1.00 38.67 C
ATOM 10 O3' G A 6 -5.464 13.489 -13.168 1.00 42.07 O
ATOM 11 C2' G A 6 -5.986 15.447 -14.523 1.00 36.82 C
ATOM 12 O2' G A 6 -7.062 14.716 -15.068 1.00 38.12 O
ATOM 13 C1' G A 6 -6.476 16.818 -14.098 1.00 34.43 C
ATOM 14 N9 G A 6 -5.460 17.839 -14.298 1.00 31.12 N
ATOM 15 C8 G A 6 -4.638 18.418 -13.352 1.00 29.70 C
ATOM 16 N7 G A 6 -3.826 19.314 -13.856 1.00 27.67 N
ATOM 17 C5 G A 6 -4.130 19.304 -15.204 1.00 27.24 C
ATOM 18 C6 G A 6 -3.570 20.059 -16.239 1.00 28.43 C
ATOM 19 O6 G A 6 -2.662 20.899 -16.103 1.00 32.28 O
ATOM 20 N1 G A 6 -4.146 19.779 -17.487 1.00 26.12 N
ATOM 21 C2 G A 6 -5.153 18.857 -17.674 1.00 26.37 C
ATOM 22 N2 G A 6 -5.609 18.692 -18.923 1.00 25.64 N
ATOM 23 N3 G A 6 -5.691 18.136 -16.701 1.00 26.93 N
ATOM 24 C4 G A 6 -5.131 18.416 -15.499 1.00 28.33 C
ATOM 25 P A A 7 -4.072 12.745 -12.908 1.00 42.76 P
ATOM 26 OP1 A A 7 -3.412 13.276 -11.691 1.00 42.17 O
ATOM 27 OP2 A A 7 -3.371 12.726 -14.211 1.00 42.86 O
ATOM 28 O5' A A 7 -4.604 11.288 -12.568 1.00 43.55 O
TER
ATOM 1 O3' G B 27 2.785 20.112 -16.777 1.00 91.10 O
ATOM 2 P A B 28 2.608 21.680 -17.108 1.00 88.46 P
ATOM 3 OP1 A B 28 3.927 22.334 -17.280 1.00 87.97 O
ATOM 4 OP2 A B 28 1.629 22.224 -16.133 1.00 88.51 O
ATOM 5 O5' A B 28 1.888 21.654 -18.535 1.00 85.05 O
ATOM 6 C5' A B 28 2.281 20.713 -19.529 1.00 80.18 C
ATOM 7 C4' A B 28 1.137 20.372 -20.478 1.00 76.63 C
ATOM 8 O4' A B 28 0.516 19.110 -20.117 1.00 72.94 O
ATOM 9 C3' A B 28 0.002 21.386 -20.564 1.00 76.11 C
ATOM 10 O3' A B 28 -0.377 21.482 -21.922 1.00 78.89 O
ATOM 11 C2' A B 28 -1.101 20.791 -19.678 1.00 73.49 C
ATOM 12 O2' A B 28 -2.418 21.118 -20.098 1.00 73.57 O
ATOM 13 C1' A B 28 -0.849 19.283 -19.782 1.00 69.68 C
ATOM 14 N9 A B 28 -1.081 18.556 -18.533 1.00 63.26 N
ATOM 15 C8 A B 28 -0.494 18.815 -17.319 1.00 61.26 C
ATOM 16 N7 A B 28 -0.876 18.001 -16.362 1.00 58.68 N
ATOM 17 C5 A B 28 -1.767 17.150 -16.994 1.00 56.98 C
ATOM 18 C6 A B 28 -2.516 16.059 -16.522 1.00 55.77 C
ATOM 19 N6 A B 28 -2.462 15.661 -15.244 1.00 56.01 N
ATOM 20 N1 A B 28 -3.317 15.404 -17.399 1.00 54.37 N
ATOM 21 C2 A B 28 -3.354 15.827 -18.671 1.00 54.50 C
ATOM 22 N3 A B 28 -2.690 16.843 -19.231 1.00 55.76 N
ATOM 23 C4 A B 28 -1.909 17.470 -18.332 1.00 58.49 C
ATOM 24 P U B 29 -1.032 22.812 -22.523 1.00 81.21 P
ATOM 25 OP1 U B 29 -0.225 23.189 -23.706 1.00 81.25 O
ATOM 26 OP2 U B 29 -1.252 23.780 -21.421 1.00 81.51 O
ATOM 27 O5' U B 29 -2.459 22.300 -23.038 1.00 82.11 O
TER
ATOM 2 P G A 6 -4.199 17.003 -9.431 1.00 39.78 P
ATOM 3 OP1 G A 6 -3.913 15.881 -8.509 1.00 38.91 O
ATOM 4 OP2 G A 6 -3.078 17.821 -9.960 1.00 39.77 O
ATOM 5 O5' G A 6 -4.995 16.539 -10.748 1.00 39.25 O
ATOM 6 C5' G A 6 -6.008 15.541 -10.777 1.00 38.19 C
ATOM 7 C4' G A 6 -6.510 15.414 -12.206 1.00 37.47 C
ATOM 8 O4' G A 6 -6.771 16.739 -12.720 1.00 36.86 O
ATOM 9 C3' G A 6 -5.487 14.896 -13.195 1.00 38.67 C
ATOM 10 O3' G A 6 -5.464 13.489 -13.168 1.00 42.07 O
ATOM 11 C2' G A 6 -5.986 15.447 -14.523 1.00 36.82 C
ATOM 12 O2' G A 6 -7.062 14.716 -15.068 1.00 38.12 O
ATOM 13 C1' G A 6 -6.476 16.818 -14.098 1.00 34.43 C
ATOM 14 N9 G A 6 -5.460 17.839 -14.298 1.00 31.12 N
ATOM 15 C8 G A 6 -4.638 18.418 -13.352 1.00 29.70 C
ATOM 16 N7 G A 6 -3.826 19.314 -13.856 1.00 27.67 N
ATOM 17 C5 G A 6 -4.130 19.304 -15.204 1.00 27.24 C
ATOM 18 C6 G A 6 -3.570 20.059 -16.239 1.00 28.43 C
ATOM 19 O6 G A 6 -2.662 20.899 -16.103 1.00 32.28 O
ATOM 20 N1 G A 6 -4.146 19.779 -17.487 1.00 26.12 N
ATOM 21 C2 G A 6 -5.153 18.857 -17.674 1.00 26.37 C
ATOM 22 N2 G A 6 -5.609 18.692 -18.923 1.00 25.64 N
ATOM 23 N3 G A 6 -5.691 18.136 -16.701 1.00 26.93 N
ATOM 24 C4 G A 6 -5.131 18.416 -15.499 1.00 28.33 C
ATOM 25 P A A 7 -4.072 12.745 -12.908 1.00 42.76 P
ATOM 26 OP1 A A 7 -3.412 13.276 -11.691 1.00 42.17 O
ATOM 27 OP2 A A 7 -3.371 12.726 -14.211 1.00 42.86 O
ATOM 28 O5' A A 7 -4.604 11.288 -12.568 1.00 43.55 O
TER
ATOM 1 O3' G B 27 2.785 20.112 -16.777 1.00 91.10 O
ATOM 2 P A B 28 2.608 21.680 -17.108 1.00 88.46 P
ATOM 3 OP1 A B 28 3.927 22.334 -17.280 1.00 87.97 O
ATOM 4 OP2 A B 28 1.629 22.224 -16.133 1.00 88.51 O
ATOM 5 O5' A B 28 1.888 21.654 -18.535 1.00 85.05 O
ATOM 6 C5' A B 28 2.281 20.713 -19.529 1.00 80.18 C
ATOM 7 C4' A B 28 1.137 20.372 -20.478 1.00 76.63 C
ATOM 8 O4' A B 28 0.516 19.110 -20.117 1.00 72.94 O
ATOM 9 C3' A B 28 0.002 21.386 -20.564 1.00 76.11 C
ATOM 10 O3' A B 28 -0.377 21.482 -21.922 1.00 78.89 O
ATOM 11 C2' A B 28 -1.101 20.791 -19.678 1.00 73.49 C
ATOM 12 O2' A B 28 -2.418 21.118 -20.098 1.00 73.57 O
ATOM 13 C1' A B 28 -0.849 19.283 -19.782 1.00 69.68 C
ATOM 14 N9 A B 28 -1.081 18.556 -18.533 1.00 63.26 N
ATOM 15 C8 A B 28 -0.494 18.815 -17.319 1.00 61.26 C
ATOM 16 N7 A B 28 -0.876 18.001 -16.362 1.00 58.68 N
ATOM 17 C5 A B 28 -1.767 17.150 -16.994 1.00 56.98 C
ATOM 18 C6 A B 28 -2.516 16.059 -16.522 1.00 55.77 C
ATOM 19 N6 A B 28 -2.462 15.661 -15.244 1.00 56.01 N
ATOM 20 N1 A B 28 -3.317 15.404 -17.399 1.00 54.37 N
ATOM 21 C2 A B 28 -3.354 15.827 -18.671 1.00 54.50 C
ATOM 22 N3 A B 28 -2.690 16.843 -19.231 1.00 55.76 N
ATOM 23 C4 A B 28 -1.909 17.470 -18.332 1.00 58.49 C
ATOM 24 P U B 29 -1.032 22.812 -22.523 1.00 81.21 P
ATOM 25 OP1 U B 29 -0.225 23.189 -23.706 1.00 81.25 O
ATOM 26 OP2 U B 29 -1.252 23.780 -21.421 1.00 81.51 O
ATOM 27 O5' U B 29 -2.459 22.300 -23.038 1.00 82.11 O
TER
Atoms:
OP1: (-3.913,15.881,-8.509)
OP2: (-3.078,17.821,-9.960)
C3': (-5.487,14.896,-13.195)
C1': (-6.476,16.818,-14.098)
C5': (-6.008,15.541,-10.777)
O6: (-2.662,20.899,-16.103)
O4': (-6.771,16.739,-12.720)
C8: (-4.638,18.418,-13.352)
C2: (-5.153,18.857,-17.674)
C6: (-3.570,20.059,-16.239)
C5: (-4.130,19.304,-15.204)
C4: (-5.131,18.416,-15.499)
P: (-4.199,17.003,-9.431)
C4': (-6.510,15.414,-12.206)
C2': (-5.986,15.447,-14.523)
O2': (-7.062,14.716,-15.068)
N1: (-4.146,19.779,-17.487)
N2: (-5.609,18.692,-18.923)
N3: (-5.691,18.136,-16.701)
N7: (-3.826,19.314,-13.856)
N9: (-5.460,17.839,-14.298)
O5': (-4.995,16.539,-10.748)
O3': (-5.464,13.489,-13.168)
OP2: (-3.078,17.821,-9.960)
C3': (-5.487,14.896,-13.195)
C1': (-6.476,16.818,-14.098)
C5': (-6.008,15.541,-10.777)
O6: (-2.662,20.899,-16.103)
O4': (-6.771,16.739,-12.720)
C8: (-4.638,18.418,-13.352)
C2: (-5.153,18.857,-17.674)
C6: (-3.570,20.059,-16.239)
C5: (-4.130,19.304,-15.204)
C4: (-5.131,18.416,-15.499)
P: (-4.199,17.003,-9.431)
C4': (-6.510,15.414,-12.206)
C2': (-5.986,15.447,-14.523)
O2': (-7.062,14.716,-15.068)
N1: (-4.146,19.779,-17.487)
N2: (-5.609,18.692,-18.923)
N3: (-5.691,18.136,-16.701)
N7: (-3.826,19.314,-13.856)
N9: (-5.460,17.839,-14.298)
O5': (-4.995,16.539,-10.748)
O3': (-5.464,13.489,-13.168)
OP1: (3.927,22.334,-17.280)
OP2: (1.629,22.224,-16.133)
C3': (0.002,21.386,-20.564)
C1': (-0.849,19.283,-19.782)
C5': (2.281,20.713,-19.529)
O4': (0.516,19.110,-20.117)
C8: (-0.494,18.815,-17.319)
O2': (-2.418,21.118,-20.098)
C6: (-2.516,16.059,-16.522)
C5: (-1.767,17.150,-16.994)
C4: (-1.909,17.470,-18.332)
P: (2.608,21.680,-17.108)
C4': (1.137,20.372,-20.478)
C2': (-1.101,20.791,-19.678)
C2: (-3.354,15.827,-18.671)
N1: (-3.317,15.404,-17.399)
N3: (-2.690,16.843,-19.231)
N6: (-2.462,15.661,-15.244)
N7: (-0.876,18.001,-16.362)
N9: (-1.081,18.556,-18.533)
O5': (1.888,21.654,-18.535)
O3': (-0.377,21.482,-21.922)
OP2: (1.629,22.224,-16.133)
C3': (0.002,21.386,-20.564)
C1': (-0.849,19.283,-19.782)
C5': (2.281,20.713,-19.529)
O4': (0.516,19.110,-20.117)
C8: (-0.494,18.815,-17.319)
O2': (-2.418,21.118,-20.098)
C6: (-2.516,16.059,-16.522)
C5: (-1.767,17.150,-16.994)
C4: (-1.909,17.470,-18.332)
P: (2.608,21.680,-17.108)
C4': (1.137,20.372,-20.478)
C2': (-1.101,20.791,-19.678)
C2: (-3.354,15.827,-18.671)
N1: (-3.317,15.404,-17.399)
N3: (-2.690,16.843,-19.231)
N6: (-2.462,15.661,-15.244)
N7: (-0.876,18.001,-16.362)
N9: (-1.081,18.556,-18.533)
O5': (1.888,21.654,-18.535)
O3': (-0.377,21.482,-21.922)
Image (generated by PyMOL):