Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2025:A2565
Extra
PDB:
ATOM 1 O3' A A2024 -86.719 -72.530 -3.714 1.00 0.01 O
ATOM 2 P G A2025 -85.351 -71.810 -4.190 1.00 0.01 P
ATOM 3 OP1 G A2025 -84.722 -71.203 -3.005 1.00 0.01 O
ATOM 4 OP2 G A2025 -85.712 -70.939 -5.316 1.00 0.01 O
ATOM 5 O5' G A2025 -84.474 -73.013 -4.702 1.00 0.01 O
ATOM 6 C5' G A2025 -84.538 -73.439 -6.044 1.00 0.01 C
ATOM 7 C4' G A2025 -83.169 -73.507 -6.657 1.00 0.01 C
ATOM 8 O4' G A2025 -82.754 -72.169 -7.039 1.00 0.01 O
ATOM 9 C3' G A2025 -82.069 -74.011 -5.729 1.00 0.01 C
ATOM 10 O3' G A2025 -81.059 -74.680 -6.503 1.00 0.01 O
ATOM 11 C2' G A2025 -81.523 -72.705 -5.190 1.00 0.01 C
ATOM 12 O2' G A2025 -80.256 -72.770 -4.618 1.00 0.01 O
ATOM 13 C1' G A2025 -81.512 -71.900 -6.446 1.00 0.01 C
ATOM 14 N9 G A2025 -81.397 -70.485 -6.222 1.00 0.01 N
ATOM 15 C8 G A2025 -81.664 -69.895 -5.034 1.00 0.01 C
ATOM 16 N7 G A2025 -81.479 -68.621 -5.120 1.00 0.01 N
ATOM 17 C5 G A2025 -81.043 -68.383 -6.423 1.00 0.01 C
ATOM 18 C6 G A2025 -80.683 -67.183 -7.065 1.00 0.01 C
ATOM 19 O6 G A2025 -80.666 -66.042 -6.607 1.00 0.01 O
ATOM 20 N1 G A2025 -80.301 -67.398 -8.365 1.00 0.01 N
ATOM 21 C2 G A2025 -80.259 -68.606 -8.997 1.00 0.01 C
ATOM 22 N2 G A2025 -79.841 -68.577 -10.286 1.00 0.01 N
ATOM 23 N3 G A2025 -80.612 -69.730 -8.397 1.00 0.01 N
ATOM 24 C4 G A2025 -80.980 -69.541 -7.119 1.00 0.01 C
ATOM 25 P A A2026 -81.081 -76.274 -6.612 1.00 0.01 P
ATOM 26 OP1 A A2026 -80.762 -76.643 -7.983 1.00 0.01 O
ATOM 27 OP2 A A2026 -82.349 -76.688 -6.043 1.00 0.01 O
ATOM 28 O5' A A2026 -79.916 -76.707 -5.666 1.00 0.01 O
TER
ATOM 1 O3' U B2564 -79.359 -66.710 -13.809 1.00 0.01 O
ATOM 2 P A B2565 -78.065 -66.411 -12.954 1.00 0.01 P
ATOM 3 OP1 A B2565 -76.970 -66.240 -13.874 1.00 0.01 O
ATOM 4 OP2 A B2565 -77.967 -67.454 -11.935 1.00 0.01 O
ATOM 5 O5' A B2565 -78.433 -65.048 -12.280 1.00 0.01 O
ATOM 6 C5' A B2565 -79.731 -64.839 -11.785 1.00 0.01 C
ATOM 7 C4' A B2565 -79.735 -63.980 -10.559 1.00 0.01 C
ATOM 8 O4' A B2565 -79.468 -64.792 -9.398 1.00 0.01 O
ATOM 9 C3' A B2565 -78.715 -62.855 -10.516 1.00 0.01 C
ATOM 10 O3' A B2565 -79.300 -61.755 -9.838 1.00 0.01 O
ATOM 11 C2' A B2565 -77.642 -63.438 -9.633 1.00 0.01 C
ATOM 12 O2' A B2565 -76.851 -62.477 -9.027 1.00 0.01 O
ATOM 13 C1' A B2565 -78.498 -64.160 -8.623 1.00 0.01 C
ATOM 14 N9 A B2565 -77.830 -65.181 -7.844 1.00 0.01 N
ATOM 15 C8 A B2565 -77.655 -66.438 -8.280 1.00 0.01 C
ATOM 16 N7 A B2565 -77.091 -67.263 -7.448 1.00 0.01 N
ATOM 17 C5 A B2565 -76.902 -66.494 -6.343 1.00 0.01 C
ATOM 18 C6 A B2565 -76.333 -66.820 -5.090 1.00 0.01 C
ATOM 19 N6 A B2565 -75.853 -68.036 -4.792 1.00 0.01 N
ATOM 20 N1 A B2565 -76.294 -65.839 -4.162 1.00 0.01 N
ATOM 21 C2 A B2565 -76.789 -64.644 -4.506 1.00 0.01 C
ATOM 22 N3 A B2565 -77.343 -64.237 -5.656 1.00 0.01 N
ATOM 23 C4 A B2565 -77.382 -65.214 -6.561 1.00 0.01 C
ATOM 24 P C B2566 -78.753 -60.279 -10.043 1.00 0.01 P
ATOM 25 OP1 C B2566 -77.647 -60.363 -10.988 1.00 0.01 O
ATOM 26 OP2 C B2566 -78.511 -59.702 -8.741 1.00 0.01 O
ATOM 27 O5' C B2566 -79.968 -59.570 -10.700 1.00 0.01 O
TER
ATOM 2 P G A2025 -85.351 -71.810 -4.190 1.00 0.01 P
ATOM 3 OP1 G A2025 -84.722 -71.203 -3.005 1.00 0.01 O
ATOM 4 OP2 G A2025 -85.712 -70.939 -5.316 1.00 0.01 O
ATOM 5 O5' G A2025 -84.474 -73.013 -4.702 1.00 0.01 O
ATOM 6 C5' G A2025 -84.538 -73.439 -6.044 1.00 0.01 C
ATOM 7 C4' G A2025 -83.169 -73.507 -6.657 1.00 0.01 C
ATOM 8 O4' G A2025 -82.754 -72.169 -7.039 1.00 0.01 O
ATOM 9 C3' G A2025 -82.069 -74.011 -5.729 1.00 0.01 C
ATOM 10 O3' G A2025 -81.059 -74.680 -6.503 1.00 0.01 O
ATOM 11 C2' G A2025 -81.523 -72.705 -5.190 1.00 0.01 C
ATOM 12 O2' G A2025 -80.256 -72.770 -4.618 1.00 0.01 O
ATOM 13 C1' G A2025 -81.512 -71.900 -6.446 1.00 0.01 C
ATOM 14 N9 G A2025 -81.397 -70.485 -6.222 1.00 0.01 N
ATOM 15 C8 G A2025 -81.664 -69.895 -5.034 1.00 0.01 C
ATOM 16 N7 G A2025 -81.479 -68.621 -5.120 1.00 0.01 N
ATOM 17 C5 G A2025 -81.043 -68.383 -6.423 1.00 0.01 C
ATOM 18 C6 G A2025 -80.683 -67.183 -7.065 1.00 0.01 C
ATOM 19 O6 G A2025 -80.666 -66.042 -6.607 1.00 0.01 O
ATOM 20 N1 G A2025 -80.301 -67.398 -8.365 1.00 0.01 N
ATOM 21 C2 G A2025 -80.259 -68.606 -8.997 1.00 0.01 C
ATOM 22 N2 G A2025 -79.841 -68.577 -10.286 1.00 0.01 N
ATOM 23 N3 G A2025 -80.612 -69.730 -8.397 1.00 0.01 N
ATOM 24 C4 G A2025 -80.980 -69.541 -7.119 1.00 0.01 C
ATOM 25 P A A2026 -81.081 -76.274 -6.612 1.00 0.01 P
ATOM 26 OP1 A A2026 -80.762 -76.643 -7.983 1.00 0.01 O
ATOM 27 OP2 A A2026 -82.349 -76.688 -6.043 1.00 0.01 O
ATOM 28 O5' A A2026 -79.916 -76.707 -5.666 1.00 0.01 O
TER
ATOM 1 O3' U B2564 -79.359 -66.710 -13.809 1.00 0.01 O
ATOM 2 P A B2565 -78.065 -66.411 -12.954 1.00 0.01 P
ATOM 3 OP1 A B2565 -76.970 -66.240 -13.874 1.00 0.01 O
ATOM 4 OP2 A B2565 -77.967 -67.454 -11.935 1.00 0.01 O
ATOM 5 O5' A B2565 -78.433 -65.048 -12.280 1.00 0.01 O
ATOM 6 C5' A B2565 -79.731 -64.839 -11.785 1.00 0.01 C
ATOM 7 C4' A B2565 -79.735 -63.980 -10.559 1.00 0.01 C
ATOM 8 O4' A B2565 -79.468 -64.792 -9.398 1.00 0.01 O
ATOM 9 C3' A B2565 -78.715 -62.855 -10.516 1.00 0.01 C
ATOM 10 O3' A B2565 -79.300 -61.755 -9.838 1.00 0.01 O
ATOM 11 C2' A B2565 -77.642 -63.438 -9.633 1.00 0.01 C
ATOM 12 O2' A B2565 -76.851 -62.477 -9.027 1.00 0.01 O
ATOM 13 C1' A B2565 -78.498 -64.160 -8.623 1.00 0.01 C
ATOM 14 N9 A B2565 -77.830 -65.181 -7.844 1.00 0.01 N
ATOM 15 C8 A B2565 -77.655 -66.438 -8.280 1.00 0.01 C
ATOM 16 N7 A B2565 -77.091 -67.263 -7.448 1.00 0.01 N
ATOM 17 C5 A B2565 -76.902 -66.494 -6.343 1.00 0.01 C
ATOM 18 C6 A B2565 -76.333 -66.820 -5.090 1.00 0.01 C
ATOM 19 N6 A B2565 -75.853 -68.036 -4.792 1.00 0.01 N
ATOM 20 N1 A B2565 -76.294 -65.839 -4.162 1.00 0.01 N
ATOM 21 C2 A B2565 -76.789 -64.644 -4.506 1.00 0.01 C
ATOM 22 N3 A B2565 -77.343 -64.237 -5.656 1.00 0.01 N
ATOM 23 C4 A B2565 -77.382 -65.214 -6.561 1.00 0.01 C
ATOM 24 P C B2566 -78.753 -60.279 -10.043 1.00 0.01 P
ATOM 25 OP1 C B2566 -77.647 -60.363 -10.988 1.00 0.01 O
ATOM 26 OP2 C B2566 -78.511 -59.702 -8.741 1.00 0.01 O
ATOM 27 O5' C B2566 -79.968 -59.570 -10.700 1.00 0.01 O
TER
Atoms:
OP1: (-84.722,-71.203,-3.005)
OP2: (-85.712,-70.939,-5.316)
C3': (-82.069,-74.011,-5.729)
C1': (-81.512,-71.900,-6.446)
C5': (-84.538,-73.439,-6.044)
O6: (-80.666,-66.042,-6.607)
O4': (-82.754,-72.169,-7.039)
C8: (-81.664,-69.895,-5.034)
C2: (-80.259,-68.606,-8.997)
C6: (-80.683,-67.183,-7.065)
C5: (-81.043,-68.383,-6.423)
C4: (-80.980,-69.541,-7.119)
P: (-85.351,-71.810,-4.190)
C4': (-83.169,-73.507,-6.657)
C2': (-81.523,-72.705,-5.190)
O2': (-80.256,-72.770,-4.618)
N1: (-80.301,-67.398,-8.365)
N2: (-79.841,-68.577,-10.286)
N3: (-80.612,-69.730,-8.397)
N7: (-81.479,-68.621,-5.120)
N9: (-81.397,-70.485,-6.222)
O5': (-84.474,-73.013,-4.702)
O3': (-81.059,-74.680,-6.503)
OP2: (-85.712,-70.939,-5.316)
C3': (-82.069,-74.011,-5.729)
C1': (-81.512,-71.900,-6.446)
C5': (-84.538,-73.439,-6.044)
O6: (-80.666,-66.042,-6.607)
O4': (-82.754,-72.169,-7.039)
C8: (-81.664,-69.895,-5.034)
C2: (-80.259,-68.606,-8.997)
C6: (-80.683,-67.183,-7.065)
C5: (-81.043,-68.383,-6.423)
C4: (-80.980,-69.541,-7.119)
P: (-85.351,-71.810,-4.190)
C4': (-83.169,-73.507,-6.657)
C2': (-81.523,-72.705,-5.190)
O2': (-80.256,-72.770,-4.618)
N1: (-80.301,-67.398,-8.365)
N2: (-79.841,-68.577,-10.286)
N3: (-80.612,-69.730,-8.397)
N7: (-81.479,-68.621,-5.120)
N9: (-81.397,-70.485,-6.222)
O5': (-84.474,-73.013,-4.702)
O3': (-81.059,-74.680,-6.503)
OP1: (-76.970,-66.240,-13.874)
OP2: (-77.967,-67.454,-11.935)
C3': (-78.715,-62.855,-10.516)
C1': (-78.498,-64.160,-8.623)
C5': (-79.731,-64.839,-11.785)
O4': (-79.468,-64.792,-9.398)
C8: (-77.655,-66.438,-8.280)
O2': (-76.851,-62.477,-9.027)
C6: (-76.333,-66.820,-5.090)
C5: (-76.902,-66.494,-6.343)
C4: (-77.382,-65.214,-6.561)
P: (-78.065,-66.411,-12.954)
C4': (-79.735,-63.980,-10.559)
C2': (-77.642,-63.438,-9.633)
C2: (-76.789,-64.644,-4.506)
N1: (-76.294,-65.839,-4.162)
N3: (-77.343,-64.237,-5.656)
N6: (-75.853,-68.036,-4.792)
N7: (-77.091,-67.263,-7.448)
N9: (-77.830,-65.181,-7.844)
O5': (-78.433,-65.048,-12.280)
O3': (-79.300,-61.755,-9.838)
OP2: (-77.967,-67.454,-11.935)
C3': (-78.715,-62.855,-10.516)
C1': (-78.498,-64.160,-8.623)
C5': (-79.731,-64.839,-11.785)
O4': (-79.468,-64.792,-9.398)
C8: (-77.655,-66.438,-8.280)
O2': (-76.851,-62.477,-9.027)
C6: (-76.333,-66.820,-5.090)
C5: (-76.902,-66.494,-6.343)
C4: (-77.382,-65.214,-6.561)
P: (-78.065,-66.411,-12.954)
C4': (-79.735,-63.980,-10.559)
C2': (-77.642,-63.438,-9.633)
C2: (-76.789,-64.644,-4.506)
N1: (-76.294,-65.839,-4.162)
N3: (-77.343,-64.237,-5.656)
N6: (-75.853,-68.036,-4.792)
N7: (-77.091,-67.263,-7.448)
N9: (-77.830,-65.181,-7.844)
O5': (-78.433,-65.048,-12.280)
O3': (-79.300,-61.755,-9.838)
Image (generated by PyMOL):