Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2465:A2469
Extra
PDB:
ATOM 1 O3' A A2464 -113.102 -40.832 -40.353 1.00 12.94 O
ATOM 2 P G A2465 -113.665 -40.806 -41.844 1.00 13.09 P
ATOM 3 OP1 G A2465 -113.481 -39.430 -42.340 1.00 13.09 O
ATOM 4 OP2 G A2465 -115.047 -41.392 -41.804 1.00 13.09 O
ATOM 5 O5' G A2465 -112.694 -41.809 -42.610 1.00 13.09 O
ATOM 6 C5' G A2465 -111.292 -41.657 -42.546 1.00 13.09 C
ATOM 7 C4' G A2465 -110.600 -42.799 -43.225 1.00 13.09 C
ATOM 8 O4' G A2465 -110.832 -44.002 -42.470 1.00 13.09 O
ATOM 9 C3' G A2465 -111.087 -43.145 -44.630 1.00 13.09 C
ATOM 10 O3' G A2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 11 C2' G A2465 -110.722 -44.616 -44.761 1.00 13.09 C
ATOM 12 O2' G A2465 -109.362 -44.771 -45.124 1.00 13.09 O
ATOM 13 C1' G A2465 -110.909 -45.112 -43.330 1.00 13.09 C
ATOM 14 N9 G A2465 -112.212 -45.744 -43.141 1.00 12.87 N
ATOM 15 C8 G A2465 -113.353 -45.139 -42.704 1.00 12.87 C
ATOM 16 N7 G A2465 -114.371 -45.963 -42.644 1.00 12.87 N
ATOM 17 C5 G A2465 -113.846 -47.159 -43.059 1.00 12.87 C
ATOM 18 C6 G A2465 -114.473 -48.386 -43.205 1.00 12.87 C
ATOM 19 O6 G A2465 -115.650 -48.632 -42.964 1.00 12.87 O
ATOM 20 N1 G A2465 -113.605 -49.352 -43.675 1.00 12.87 N
ATOM 21 C2 G A2465 -112.293 -49.134 -43.952 1.00 12.87 C
ATOM 22 N2 G A2465 -111.582 -50.173 -44.382 1.00 12.87 N
ATOM 23 N3 G A2465 -111.691 -47.983 -43.809 1.00 12.87 N
ATOM 24 C4 G A2465 -112.526 -47.049 -43.362 1.00 12.87 C
ATOM 25 P U A2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 26 OP1 U A2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 27 OP2 U A2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 28 O5' U A2466 -112.586 -42.274 -46.989 1.00 20.39 O
TER
ATOM 1 O3' C B2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 2 P A B2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 3 OP1 A B2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 4 OP2 A B2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 5 O5' A B2469 -118.807 -51.129 -42.885 1.00 8.19 O
ATOM 6 C5' A B2469 -117.707 -52.028 -42.835 1.00 8.19 C
ATOM 7 C4' A B2469 -116.606 -51.509 -41.943 1.00 8.19 C
ATOM 8 O4' A B2469 -117.065 -51.465 -40.566 1.00 8.19 O
ATOM 9 C3' A B2469 -115.358 -52.355 -41.902 1.00 8.19 C
ATOM 10 O3' A B2469 -114.458 -52.029 -42.927 1.00 8.19 O
ATOM 11 C2' A B2469 -114.815 -52.093 -40.518 1.00 8.19 C
ATOM 12 O2' A B2469 -114.160 -50.839 -40.472 1.00 8.19 O
ATOM 13 C1' A B2469 -116.098 -52.001 -39.713 1.00 8.19 C
ATOM 14 N9 A B2469 -116.585 -53.324 -39.273 1.00 8.18 N
ATOM 15 C8 A B2469 -117.814 -53.791 -39.640 1.00 8.18 C
ATOM 16 N7 A B2469 -118.115 -54.970 -39.155 1.00 8.18 N
ATOM 17 C5 A B2469 -117.004 -55.336 -38.413 1.00 8.18 C
ATOM 18 C6 A B2469 -116.722 -56.500 -37.659 1.00 8.18 C
ATOM 19 N6 A B2469 -117.558 -57.537 -37.525 1.00 8.18 N
ATOM 20 N1 A B2469 -115.534 -56.570 -37.032 1.00 8.18 N
ATOM 21 C2 A B2469 -114.701 -55.531 -37.172 1.00 8.18 C
ATOM 22 N3 A B2469 -114.859 -54.393 -37.848 1.00 8.18 N
ATOM 23 C4 A B2469 -116.051 -54.331 -38.465 1.00 8.18 C
ATOM 24 P U B2470 -113.783 -53.191 -43.772 1.00 6.46 P
ATOM 25 OP1 U B2470 -112.981 -52.566 -44.848 1.00 6.46 O
ATOM 26 OP2 U B2470 -114.873 -54.122 -44.145 1.00 6.46 O
ATOM 27 O5' U B2470 -112.816 -53.857 -42.715 1.00 6.46 O
TER
ATOM 2 P G A2465 -113.665 -40.806 -41.844 1.00 13.09 P
ATOM 3 OP1 G A2465 -113.481 -39.430 -42.340 1.00 13.09 O
ATOM 4 OP2 G A2465 -115.047 -41.392 -41.804 1.00 13.09 O
ATOM 5 O5' G A2465 -112.694 -41.809 -42.610 1.00 13.09 O
ATOM 6 C5' G A2465 -111.292 -41.657 -42.546 1.00 13.09 C
ATOM 7 C4' G A2465 -110.600 -42.799 -43.225 1.00 13.09 C
ATOM 8 O4' G A2465 -110.832 -44.002 -42.470 1.00 13.09 O
ATOM 9 C3' G A2465 -111.087 -43.145 -44.630 1.00 13.09 C
ATOM 10 O3' G A2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 11 C2' G A2465 -110.722 -44.616 -44.761 1.00 13.09 C
ATOM 12 O2' G A2465 -109.362 -44.771 -45.124 1.00 13.09 O
ATOM 13 C1' G A2465 -110.909 -45.112 -43.330 1.00 13.09 C
ATOM 14 N9 G A2465 -112.212 -45.744 -43.141 1.00 12.87 N
ATOM 15 C8 G A2465 -113.353 -45.139 -42.704 1.00 12.87 C
ATOM 16 N7 G A2465 -114.371 -45.963 -42.644 1.00 12.87 N
ATOM 17 C5 G A2465 -113.846 -47.159 -43.059 1.00 12.87 C
ATOM 18 C6 G A2465 -114.473 -48.386 -43.205 1.00 12.87 C
ATOM 19 O6 G A2465 -115.650 -48.632 -42.964 1.00 12.87 O
ATOM 20 N1 G A2465 -113.605 -49.352 -43.675 1.00 12.87 N
ATOM 21 C2 G A2465 -112.293 -49.134 -43.952 1.00 12.87 C
ATOM 22 N2 G A2465 -111.582 -50.173 -44.382 1.00 12.87 N
ATOM 23 N3 G A2465 -111.691 -47.983 -43.809 1.00 12.87 N
ATOM 24 C4 G A2465 -112.526 -47.049 -43.362 1.00 12.87 C
ATOM 25 P U A2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 26 OP1 U A2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 27 OP2 U A2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 28 O5' U A2466 -112.586 -42.274 -46.989 1.00 20.39 O
TER
ATOM 1 O3' C B2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 2 P A B2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 3 OP1 A B2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 4 OP2 A B2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 5 O5' A B2469 -118.807 -51.129 -42.885 1.00 8.19 O
ATOM 6 C5' A B2469 -117.707 -52.028 -42.835 1.00 8.19 C
ATOM 7 C4' A B2469 -116.606 -51.509 -41.943 1.00 8.19 C
ATOM 8 O4' A B2469 -117.065 -51.465 -40.566 1.00 8.19 O
ATOM 9 C3' A B2469 -115.358 -52.355 -41.902 1.00 8.19 C
ATOM 10 O3' A B2469 -114.458 -52.029 -42.927 1.00 8.19 O
ATOM 11 C2' A B2469 -114.815 -52.093 -40.518 1.00 8.19 C
ATOM 12 O2' A B2469 -114.160 -50.839 -40.472 1.00 8.19 O
ATOM 13 C1' A B2469 -116.098 -52.001 -39.713 1.00 8.19 C
ATOM 14 N9 A B2469 -116.585 -53.324 -39.273 1.00 8.18 N
ATOM 15 C8 A B2469 -117.814 -53.791 -39.640 1.00 8.18 C
ATOM 16 N7 A B2469 -118.115 -54.970 -39.155 1.00 8.18 N
ATOM 17 C5 A B2469 -117.004 -55.336 -38.413 1.00 8.18 C
ATOM 18 C6 A B2469 -116.722 -56.500 -37.659 1.00 8.18 C
ATOM 19 N6 A B2469 -117.558 -57.537 -37.525 1.00 8.18 N
ATOM 20 N1 A B2469 -115.534 -56.570 -37.032 1.00 8.18 N
ATOM 21 C2 A B2469 -114.701 -55.531 -37.172 1.00 8.18 C
ATOM 22 N3 A B2469 -114.859 -54.393 -37.848 1.00 8.18 N
ATOM 23 C4 A B2469 -116.051 -54.331 -38.465 1.00 8.18 C
ATOM 24 P U B2470 -113.783 -53.191 -43.772 1.00 6.46 P
ATOM 25 OP1 U B2470 -112.981 -52.566 -44.848 1.00 6.46 O
ATOM 26 OP2 U B2470 -114.873 -54.122 -44.145 1.00 6.46 O
ATOM 27 O5' U B2470 -112.816 -53.857 -42.715 1.00 6.46 O
TER
Atoms:
OP1: (-113.481,-39.430,-42.340)
OP2: (-115.047,-41.392,-41.804)
C3': (-111.087,-43.145,-44.630)
C1': (-110.909,-45.112,-43.330)
C5': (-111.292,-41.657,-42.546)
O6: (-115.650,-48.632,-42.964)
O4': (-110.832,-44.002,-42.470)
C8: (-113.353,-45.139,-42.704)
C2: (-112.293,-49.134,-43.952)
C6: (-114.473,-48.386,-43.205)
C5: (-113.846,-47.159,-43.059)
C4: (-112.526,-47.049,-43.362)
P: (-113.665,-40.806,-41.844)
C4': (-110.600,-42.799,-43.225)
C2': (-110.722,-44.616,-44.761)
O2': (-109.362,-44.771,-45.124)
N1: (-113.605,-49.352,-43.675)
N2: (-111.582,-50.173,-44.382)
N3: (-111.691,-47.983,-43.809)
N7: (-114.371,-45.963,-42.644)
N9: (-112.212,-45.744,-43.141)
O5': (-112.694,-41.809,-42.610)
O3': (-110.498,-42.327,-45.632)
OP2: (-115.047,-41.392,-41.804)
C3': (-111.087,-43.145,-44.630)
C1': (-110.909,-45.112,-43.330)
C5': (-111.292,-41.657,-42.546)
O6: (-115.650,-48.632,-42.964)
O4': (-110.832,-44.002,-42.470)
C8: (-113.353,-45.139,-42.704)
C2: (-112.293,-49.134,-43.952)
C6: (-114.473,-48.386,-43.205)
C5: (-113.846,-47.159,-43.059)
C4: (-112.526,-47.049,-43.362)
P: (-113.665,-40.806,-41.844)
C4': (-110.600,-42.799,-43.225)
C2': (-110.722,-44.616,-44.761)
O2': (-109.362,-44.771,-45.124)
N1: (-113.605,-49.352,-43.675)
N2: (-111.582,-50.173,-44.382)
N3: (-111.691,-47.983,-43.809)
N7: (-114.371,-45.963,-42.644)
N9: (-112.212,-45.744,-43.141)
O5': (-112.694,-41.809,-42.610)
O3': (-110.498,-42.327,-45.632)
OP1: (-120.653,-52.347,-44.082)
OP2: (-120.458,-49.812,-44.235)
C3': (-115.358,-52.355,-41.902)
C1': (-116.098,-52.001,-39.713)
C5': (-117.707,-52.028,-42.835)
O4': (-117.065,-51.465,-40.566)
C8: (-117.814,-53.791,-39.640)
O2': (-114.160,-50.839,-40.472)
C6: (-116.722,-56.500,-37.659)
C5: (-117.004,-55.336,-38.413)
C4: (-116.051,-54.331,-38.465)
P: (-119.810,-51.138,-44.117)
C4': (-116.606,-51.509,-41.943)
C2': (-114.815,-52.093,-40.518)
C2: (-114.701,-55.531,-37.172)
N1: (-115.534,-56.570,-37.032)
N3: (-114.859,-54.393,-37.848)
N6: (-117.558,-57.537,-37.525)
N7: (-118.115,-54.970,-39.155)
N9: (-116.585,-53.324,-39.273)
O5': (-118.807,-51.129,-42.885)
O3': (-114.458,-52.029,-42.927)
OP2: (-120.458,-49.812,-44.235)
C3': (-115.358,-52.355,-41.902)
C1': (-116.098,-52.001,-39.713)
C5': (-117.707,-52.028,-42.835)
O4': (-117.065,-51.465,-40.566)
C8: (-117.814,-53.791,-39.640)
O2': (-114.160,-50.839,-40.472)
C6: (-116.722,-56.500,-37.659)
C5: (-117.004,-55.336,-38.413)
C4: (-116.051,-54.331,-38.465)
P: (-119.810,-51.138,-44.117)
C4': (-116.606,-51.509,-41.943)
C2': (-114.815,-52.093,-40.518)
C2: (-114.701,-55.531,-37.172)
N1: (-115.534,-56.570,-37.032)
N3: (-114.859,-54.393,-37.848)
N6: (-117.558,-57.537,-37.525)
N7: (-118.115,-54.970,-39.155)
N9: (-116.585,-53.324,-39.273)
O5': (-118.807,-51.129,-42.885)
O3': (-114.458,-52.029,-42.927)
Image (generated by PyMOL):