Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8T:A2024:A2564
Extra
PDB:
ATOM 1 O3' A A2023 -60.208 121.249 174.848 1.00 0.01 O
ATOM 2 P G A2024 -58.773 120.734 174.345 1.00 0.21 P
ATOM 3 OP1 G A2024 -58.021 121.926 173.936 1.00 0.21 O
ATOM 4 OP2 G A2024 -59.024 119.669 173.346 1.00 0.21 O
ATOM 5 O5' G A2024 -58.102 120.106 175.652 1.00 0.21 O
ATOM 6 C5' G A2024 -58.589 118.897 176.234 1.00 0.21 C
ATOM 7 C4' G A2024 -57.460 118.000 176.704 1.00 0.21 C
ATOM 8 O4' G A2024 -56.848 117.372 175.544 1.00 0.21 O
ATOM 9 C3' G A2024 -56.310 118.690 177.458 1.00 0.21 C
ATOM 10 O3' G A2024 -55.739 117.774 178.387 1.00 0.21 O
ATOM 11 C2' G A2024 -55.301 118.932 176.346 1.00 0.21 C
ATOM 12 O2' G A2024 -53.967 119.116 176.781 1.00 0.21 O
ATOM 13 C1' G A2024 -55.463 117.645 175.540 1.00 0.21 C
ATOM 14 N9 G A2024 -55.024 117.744 174.158 1.00 0.22 N
ATOM 15 C8 G A2024 -55.014 118.876 173.379 1.00 0.22 C
ATOM 16 N7 G A2024 -54.564 118.664 172.172 1.00 0.22 N
ATOM 17 C5 G A2024 -54.271 117.303 172.175 1.00 0.22 C
ATOM 18 C6 G A2024 -53.739 116.508 171.146 1.00 0.22 C
ATOM 19 O6 G A2024 -53.431 116.891 170.013 1.00 0.22 O
ATOM 20 N1 G A2024 -53.585 115.186 171.557 1.00 0.22 N
ATOM 21 C2 G A2024 -53.900 114.705 172.800 1.00 0.22 C
ATOM 22 N2 G A2024 -53.673 113.403 173.015 1.00 0.22 N
ATOM 23 N3 G A2024 -54.396 115.446 173.771 1.00 0.22 N
ATOM 24 C4 G A2024 -54.549 116.723 173.390 1.00 0.22 C
ATOM 25 P A A2025 -56.081 117.854 179.946 1.00 0.01 P
ATOM 26 OP1 A A2025 -55.812 116.511 180.520 1.00 0.01 O
ATOM 27 OP2 A A2025 -57.425 118.415 180.069 1.00 0.01 O
ATOM 28 O5' A A2025 -55.018 118.877 180.504 1.00 0.01 O
TER
ATOM 1 O3' U B2563 -53.317 109.509 171.633 1.00 0.01 O
ATOM 2 P A B2564 -51.845 110.092 171.566 1.00 0.01 P
ATOM 3 OP1 A B2564 -51.024 109.147 170.800 1.00 0.01 O
ATOM 4 OP2 A B2564 -51.456 110.431 172.953 1.00 0.01 O
ATOM 5 O5' A B2564 -52.061 111.388 170.711 1.00 0.01 O
ATOM 6 C5' A B2564 -52.878 111.331 169.560 1.00 0.01 C
ATOM 7 C4' A B2564 -52.568 112.449 168.630 1.00 0.01 C
ATOM 8 O4' A B2564 -52.308 113.639 169.420 1.00 0.01 O
ATOM 9 C3' A B2564 -51.315 112.248 167.770 1.00 0.01 C
ATOM 10 O3' A B2564 -51.489 112.908 166.515 1.00 0.01 O
ATOM 11 C2' A B2564 -50.267 112.991 168.563 1.00 0.01 C
ATOM 12 O2' A B2564 -49.151 113.360 167.809 1.00 0.01 O
ATOM 13 C1' A B2564 -51.085 114.189 169.009 1.00 0.01 C
ATOM 14 N9 A B2564 -50.540 114.929 170.118 1.00 0.13 N
ATOM 15 C8 A B2564 -50.565 114.514 171.404 1.00 0.13 C
ATOM 16 N7 A B2564 -50.044 115.396 172.219 1.00 0.13 N
ATOM 17 C5 A B2564 -49.692 116.463 171.397 1.00 0.13 C
ATOM 18 C6 A B2564 -49.098 117.680 171.682 1.00 0.13 C
ATOM 19 N6 A B2564 -48.738 118.028 172.916 1.00 0.13 N
ATOM 20 N1 A B2564 -48.890 118.515 170.668 1.00 0.13 N
ATOM 21 C2 A B2564 -49.258 118.132 169.456 1.00 0.13 C
ATOM 22 N3 A B2564 -49.824 117.004 169.063 1.00 0.13 N
ATOM 23 C4 A B2564 -50.014 116.196 170.103 1.00 0.13 C
ATOM 24 P C B2565 -50.704 112.401 165.227 1.00 0.01 P
ATOM 25 OP1 C B2565 -50.010 111.161 165.613 1.00 0.01 O
ATOM 26 OP2 C B2565 -49.924 113.533 164.697 1.00 0.01 O
ATOM 27 O5' C B2565 -51.863 112.086 164.242 1.00 0.01 O
TER
ATOM 2 P G A2024 -58.773 120.734 174.345 1.00 0.21 P
ATOM 3 OP1 G A2024 -58.021 121.926 173.936 1.00 0.21 O
ATOM 4 OP2 G A2024 -59.024 119.669 173.346 1.00 0.21 O
ATOM 5 O5' G A2024 -58.102 120.106 175.652 1.00 0.21 O
ATOM 6 C5' G A2024 -58.589 118.897 176.234 1.00 0.21 C
ATOM 7 C4' G A2024 -57.460 118.000 176.704 1.00 0.21 C
ATOM 8 O4' G A2024 -56.848 117.372 175.544 1.00 0.21 O
ATOM 9 C3' G A2024 -56.310 118.690 177.458 1.00 0.21 C
ATOM 10 O3' G A2024 -55.739 117.774 178.387 1.00 0.21 O
ATOM 11 C2' G A2024 -55.301 118.932 176.346 1.00 0.21 C
ATOM 12 O2' G A2024 -53.967 119.116 176.781 1.00 0.21 O
ATOM 13 C1' G A2024 -55.463 117.645 175.540 1.00 0.21 C
ATOM 14 N9 G A2024 -55.024 117.744 174.158 1.00 0.22 N
ATOM 15 C8 G A2024 -55.014 118.876 173.379 1.00 0.22 C
ATOM 16 N7 G A2024 -54.564 118.664 172.172 1.00 0.22 N
ATOM 17 C5 G A2024 -54.271 117.303 172.175 1.00 0.22 C
ATOM 18 C6 G A2024 -53.739 116.508 171.146 1.00 0.22 C
ATOM 19 O6 G A2024 -53.431 116.891 170.013 1.00 0.22 O
ATOM 20 N1 G A2024 -53.585 115.186 171.557 1.00 0.22 N
ATOM 21 C2 G A2024 -53.900 114.705 172.800 1.00 0.22 C
ATOM 22 N2 G A2024 -53.673 113.403 173.015 1.00 0.22 N
ATOM 23 N3 G A2024 -54.396 115.446 173.771 1.00 0.22 N
ATOM 24 C4 G A2024 -54.549 116.723 173.390 1.00 0.22 C
ATOM 25 P A A2025 -56.081 117.854 179.946 1.00 0.01 P
ATOM 26 OP1 A A2025 -55.812 116.511 180.520 1.00 0.01 O
ATOM 27 OP2 A A2025 -57.425 118.415 180.069 1.00 0.01 O
ATOM 28 O5' A A2025 -55.018 118.877 180.504 1.00 0.01 O
TER
ATOM 1 O3' U B2563 -53.317 109.509 171.633 1.00 0.01 O
ATOM 2 P A B2564 -51.845 110.092 171.566 1.00 0.01 P
ATOM 3 OP1 A B2564 -51.024 109.147 170.800 1.00 0.01 O
ATOM 4 OP2 A B2564 -51.456 110.431 172.953 1.00 0.01 O
ATOM 5 O5' A B2564 -52.061 111.388 170.711 1.00 0.01 O
ATOM 6 C5' A B2564 -52.878 111.331 169.560 1.00 0.01 C
ATOM 7 C4' A B2564 -52.568 112.449 168.630 1.00 0.01 C
ATOM 8 O4' A B2564 -52.308 113.639 169.420 1.00 0.01 O
ATOM 9 C3' A B2564 -51.315 112.248 167.770 1.00 0.01 C
ATOM 10 O3' A B2564 -51.489 112.908 166.515 1.00 0.01 O
ATOM 11 C2' A B2564 -50.267 112.991 168.563 1.00 0.01 C
ATOM 12 O2' A B2564 -49.151 113.360 167.809 1.00 0.01 O
ATOM 13 C1' A B2564 -51.085 114.189 169.009 1.00 0.01 C
ATOM 14 N9 A B2564 -50.540 114.929 170.118 1.00 0.13 N
ATOM 15 C8 A B2564 -50.565 114.514 171.404 1.00 0.13 C
ATOM 16 N7 A B2564 -50.044 115.396 172.219 1.00 0.13 N
ATOM 17 C5 A B2564 -49.692 116.463 171.397 1.00 0.13 C
ATOM 18 C6 A B2564 -49.098 117.680 171.682 1.00 0.13 C
ATOM 19 N6 A B2564 -48.738 118.028 172.916 1.00 0.13 N
ATOM 20 N1 A B2564 -48.890 118.515 170.668 1.00 0.13 N
ATOM 21 C2 A B2564 -49.258 118.132 169.456 1.00 0.13 C
ATOM 22 N3 A B2564 -49.824 117.004 169.063 1.00 0.13 N
ATOM 23 C4 A B2564 -50.014 116.196 170.103 1.00 0.13 C
ATOM 24 P C B2565 -50.704 112.401 165.227 1.00 0.01 P
ATOM 25 OP1 C B2565 -50.010 111.161 165.613 1.00 0.01 O
ATOM 26 OP2 C B2565 -49.924 113.533 164.697 1.00 0.01 O
ATOM 27 O5' C B2565 -51.863 112.086 164.242 1.00 0.01 O
TER
Atoms:
OP1: (-58.021,121.926,173.936)
OP2: (-59.024,119.669,173.346)
C3': (-56.310,118.690,177.458)
C1': (-55.463,117.645,175.540)
C5': (-58.589,118.897,176.234)
O6: (-53.431,116.891,170.013)
O4': (-56.848,117.372,175.544)
C8: (-55.014,118.876,173.379)
C2: (-53.900,114.705,172.800)
C6: (-53.739,116.508,171.146)
C5: (-54.271,117.303,172.175)
C4: (-54.549,116.723,173.390)
P: (-58.773,120.734,174.345)
C4': (-57.460,118.000,176.704)
C2': (-55.301,118.932,176.346)
O2': (-53.967,119.116,176.781)
N1: (-53.585,115.186,171.557)
N2: (-53.673,113.403,173.015)
N3: (-54.396,115.446,173.771)
N7: (-54.564,118.664,172.172)
N9: (-55.024,117.744,174.158)
O5': (-58.102,120.106,175.652)
O3': (-55.739,117.774,178.387)
OP2: (-59.024,119.669,173.346)
C3': (-56.310,118.690,177.458)
C1': (-55.463,117.645,175.540)
C5': (-58.589,118.897,176.234)
O6: (-53.431,116.891,170.013)
O4': (-56.848,117.372,175.544)
C8: (-55.014,118.876,173.379)
C2: (-53.900,114.705,172.800)
C6: (-53.739,116.508,171.146)
C5: (-54.271,117.303,172.175)
C4: (-54.549,116.723,173.390)
P: (-58.773,120.734,174.345)
C4': (-57.460,118.000,176.704)
C2': (-55.301,118.932,176.346)
O2': (-53.967,119.116,176.781)
N1: (-53.585,115.186,171.557)
N2: (-53.673,113.403,173.015)
N3: (-54.396,115.446,173.771)
N7: (-54.564,118.664,172.172)
N9: (-55.024,117.744,174.158)
O5': (-58.102,120.106,175.652)
O3': (-55.739,117.774,178.387)
OP1: (-51.024,109.147,170.800)
OP2: (-51.456,110.431,172.953)
C3': (-51.315,112.248,167.770)
C1': (-51.085,114.189,169.009)
C5': (-52.878,111.331,169.560)
O4': (-52.308,113.639,169.420)
C8: (-50.565,114.514,171.404)
O2': (-49.151,113.360,167.809)
C6: (-49.098,117.680,171.682)
C5: (-49.692,116.463,171.397)
C4: (-50.014,116.196,170.103)
P: (-51.845,110.092,171.566)
C4': (-52.568,112.449,168.630)
C2': (-50.267,112.991,168.563)
C2: (-49.258,118.132,169.456)
N1: (-48.890,118.515,170.668)
N3: (-49.824,117.004,169.063)
N6: (-48.738,118.028,172.916)
N7: (-50.044,115.396,172.219)
N9: (-50.540,114.929,170.118)
O5': (-52.061,111.388,170.711)
O3': (-51.489,112.908,166.515)
OP2: (-51.456,110.431,172.953)
C3': (-51.315,112.248,167.770)
C1': (-51.085,114.189,169.009)
C5': (-52.878,111.331,169.560)
O4': (-52.308,113.639,169.420)
C8: (-50.565,114.514,171.404)
O2': (-49.151,113.360,167.809)
C6: (-49.098,117.680,171.682)
C5: (-49.692,116.463,171.397)
C4: (-50.014,116.196,170.103)
P: (-51.845,110.092,171.566)
C4': (-52.568,112.449,168.630)
C2': (-50.267,112.991,168.563)
C2: (-49.258,118.132,169.456)
N1: (-48.890,118.515,170.668)
N3: (-49.824,117.004,169.063)
N6: (-48.738,118.028,172.916)
N7: (-50.044,115.396,172.219)
N9: (-50.540,114.929,170.118)
O5': (-52.061,111.388,170.711)
O3': (-51.489,112.908,166.515)
Image (generated by PyMOL):