Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12593:12597
Extra
PDB:
ATOM 1 O3' C A2592 -9.407 1.026 17.941 1.00 62.10 O
ATOM 2 P G A2593 -10.499 1.495 16.844 1.00 59.68 P
ATOM 3 OP1 G A2593 -11.844 1.531 17.539 1.00 59.83 O
ATOM 4 OP2 G A2593 -10.332 0.630 15.645 1.00 60.00 O
ATOM 5 O5' G A2593 -10.029 2.967 16.482 1.00 59.78 O
ATOM 6 C5' G A2593 -9.886 3.963 17.474 1.00 59.48 C
ATOM 7 C4' G A2593 -8.956 5.058 17.008 1.00 59.47 C
ATOM 8 O4' G A2593 -7.615 4.539 16.854 1.00 59.11 O
ATOM 9 C3' G A2593 -9.240 5.659 15.643 1.00 60.07 C
ATOM 10 O3' G A2593 -10.347 6.555 15.639 1.00 60.47 O
ATOM 11 C2' G A2593 -7.921 6.327 15.353 1.00 59.87 C
ATOM 12 O2' G A2593 -7.765 7.447 16.194 1.00 59.65 O
ATOM 13 C1' G A2593 -6.960 5.249 15.828 1.00 59.35 C
ATOM 14 N9 G A2593 -6.631 4.312 14.749 1.00 59.56 N
ATOM 15 C8 G A2593 -7.214 3.109 14.459 1.00 59.72 C
ATOM 16 N7 G A2593 -6.684 2.543 13.400 1.00 59.92 N
ATOM 17 C5 G A2593 -5.695 3.420 12.981 1.00 59.87 C
ATOM 18 C6 G A2593 -4.777 3.348 11.896 1.00 60.02 C
ATOM 19 O6 G A2593 -4.684 2.446 11.080 1.00 60.24 O
ATOM 20 N1 G A2593 -3.931 4.455 11.819 1.00 59.92 N
ATOM 21 C2 G A2593 -3.999 5.494 12.718 1.00 59.69 C
ATOM 22 N2 G A2593 -3.166 6.502 12.527 1.00 59.64 N
ATOM 23 N3 G A2593 -4.834 5.582 13.743 1.00 59.55 N
ATOM 24 C4 G A2593 -5.654 4.518 13.813 1.00 59.65 C
ATOM 25 P U A2594 -10.942 7.119 14.262 1.00 90.74 P
ATOM 26 OP1 U A2594 -10.313 6.374 13.154 1.00 90.89 O
ATOM 27 OP2 U A2594 -10.799 8.587 14.299 1.00 90.84 O
ATOM 28 O5' U A2594 -12.465 6.716 14.379 1.00 91.10 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
ATOM 2 P G A2593 -10.499 1.495 16.844 1.00 59.68 P
ATOM 3 OP1 G A2593 -11.844 1.531 17.539 1.00 59.83 O
ATOM 4 OP2 G A2593 -10.332 0.630 15.645 1.00 60.00 O
ATOM 5 O5' G A2593 -10.029 2.967 16.482 1.00 59.78 O
ATOM 6 C5' G A2593 -9.886 3.963 17.474 1.00 59.48 C
ATOM 7 C4' G A2593 -8.956 5.058 17.008 1.00 59.47 C
ATOM 8 O4' G A2593 -7.615 4.539 16.854 1.00 59.11 O
ATOM 9 C3' G A2593 -9.240 5.659 15.643 1.00 60.07 C
ATOM 10 O3' G A2593 -10.347 6.555 15.639 1.00 60.47 O
ATOM 11 C2' G A2593 -7.921 6.327 15.353 1.00 59.87 C
ATOM 12 O2' G A2593 -7.765 7.447 16.194 1.00 59.65 O
ATOM 13 C1' G A2593 -6.960 5.249 15.828 1.00 59.35 C
ATOM 14 N9 G A2593 -6.631 4.312 14.749 1.00 59.56 N
ATOM 15 C8 G A2593 -7.214 3.109 14.459 1.00 59.72 C
ATOM 16 N7 G A2593 -6.684 2.543 13.400 1.00 59.92 N
ATOM 17 C5 G A2593 -5.695 3.420 12.981 1.00 59.87 C
ATOM 18 C6 G A2593 -4.777 3.348 11.896 1.00 60.02 C
ATOM 19 O6 G A2593 -4.684 2.446 11.080 1.00 60.24 O
ATOM 20 N1 G A2593 -3.931 4.455 11.819 1.00 59.92 N
ATOM 21 C2 G A2593 -3.999 5.494 12.718 1.00 59.69 C
ATOM 22 N2 G A2593 -3.166 6.502 12.527 1.00 59.64 N
ATOM 23 N3 G A2593 -4.834 5.582 13.743 1.00 59.55 N
ATOM 24 C4 G A2593 -5.654 4.518 13.813 1.00 59.65 C
ATOM 25 P U A2594 -10.942 7.119 14.262 1.00 90.74 P
ATOM 26 OP1 U A2594 -10.313 6.374 13.154 1.00 90.89 O
ATOM 27 OP2 U A2594 -10.799 8.587 14.299 1.00 90.84 O
ATOM 28 O5' U A2594 -12.465 6.716 14.379 1.00 91.10 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
Atoms:
OP1: (-11.844,1.531,17.539)
OP2: (-10.332,0.630,15.645)
C3': (-9.240,5.659,15.643)
C1': (-6.960,5.249,15.828)
C5': (-9.886,3.963,17.474)
O6: (-4.684,2.446,11.080)
O4': (-7.615,4.539,16.854)
C8: (-7.214,3.109,14.459)
C2: (-3.999,5.494,12.718)
C6: (-4.777,3.348,11.896)
C5: (-5.695,3.420,12.981)
C4: (-5.654,4.518,13.813)
P: (-10.499,1.495,16.844)
C4': (-8.956,5.058,17.008)
C2': (-7.921,6.327,15.353)
O2': (-7.765,7.447,16.194)
N1: (-3.931,4.455,11.819)
N2: (-3.166,6.502,12.527)
N3: (-4.834,5.582,13.743)
N7: (-6.684,2.543,13.400)
N9: (-6.631,4.312,14.749)
O5': (-10.029,2.967,16.482)
O3': (-10.347,6.555,15.639)
OP2: (-10.332,0.630,15.645)
C3': (-9.240,5.659,15.643)
C1': (-6.960,5.249,15.828)
C5': (-9.886,3.963,17.474)
O6: (-4.684,2.446,11.080)
O4': (-7.615,4.539,16.854)
C8: (-7.214,3.109,14.459)
C2: (-3.999,5.494,12.718)
C6: (-4.777,3.348,11.896)
C5: (-5.695,3.420,12.981)
C4: (-5.654,4.518,13.813)
P: (-10.499,1.495,16.844)
C4': (-8.956,5.058,17.008)
C2': (-7.921,6.327,15.353)
O2': (-7.765,7.447,16.194)
N1: (-3.931,4.455,11.819)
N2: (-3.166,6.502,12.527)
N3: (-4.834,5.582,13.743)
N7: (-6.684,2.543,13.400)
N9: (-6.631,4.312,14.749)
O5': (-10.029,2.967,16.482)
O3': (-10.347,6.555,15.639)
OP1: (-2.982,-0.010,5.026)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
Image (generated by PyMOL):