Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12548:12403
Extra
PDB:
ATOM 1 O3' U A2547 26.062 -39.444 72.416 1.00 40.00 O
ATOM 2 P G A2548 26.859 -38.865 71.160 1.00 38.84 P
ATOM 3 OP1 G A2548 27.717 -39.990 70.678 1.00 38.99 O
ATOM 4 OP2 G A2548 27.491 -37.614 71.612 1.00 38.59 O
ATOM 5 O5' G A2548 25.726 -38.519 70.089 1.00 38.83 O
ATOM 6 C5' G A2548 24.953 -39.541 69.470 1.00 39.07 C
ATOM 7 C4' G A2548 24.282 -39.060 68.196 1.00 39.03 C
ATOM 8 O4' G A2548 23.846 -40.227 67.449 1.00 39.28 O
ATOM 9 C3' G A2548 23.038 -38.186 68.385 1.00 38.96 C
ATOM 10 O3' G A2548 22.916 -37.245 67.314 1.00 38.82 O
ATOM 11 C2' G A2548 21.903 -39.202 68.311 1.00 39.23 C
ATOM 12 O2' G A2548 20.654 -38.675 67.926 1.00 39.25 O
ATOM 13 C1' G A2548 22.437 -40.217 67.293 1.00 39.39 C
ATOM 14 N9 G A2548 21.939 -41.593 67.522 1.00 39.69 N
ATOM 15 C8 G A2548 22.468 -42.622 68.297 1.00 39.85 C
ATOM 16 N7 G A2548 21.773 -43.712 68.295 1.00 40.13 N
ATOM 17 C5 G A2548 20.700 -43.385 67.491 1.00 40.16 C
ATOM 18 C6 G A2548 19.577 -44.154 67.104 1.00 40.43 C
ATOM 19 O6 G A2548 19.339 -45.337 67.439 1.00 40.71 O
ATOM 20 N1 G A2548 18.720 -43.440 66.256 1.00 40.38 N
ATOM 21 C2 G A2548 18.953 -42.170 65.830 1.00 40.11 C
ATOM 22 N2 G A2548 18.076 -41.641 65.003 1.00 40.11 N
ATOM 23 N3 G A2548 19.974 -41.427 66.177 1.00 39.86 N
ATOM 24 C4 G A2548 20.788 -42.102 67.006 1.00 39.90 C
ATOM 25 P C A2549 22.784 -35.665 67.637 1.00 42.80 P
ATOM 26 OP1 C A2549 22.176 -35.539 68.942 1.00 42.82 O
ATOM 27 OP2 C A2549 22.153 -35.011 66.478 1.00 42.76 O
ATOM 28 O5' C A2549 24.284 -35.217 67.737 1.00 42.61 O
TER
ATOM 1 O3' U B2402 16.309 -46.781 58.602 1.00 47.29 O
ATOM 2 P G B2403 15.617 -46.403 59.995 1.00 45.59 P
ATOM 3 OP1 G B2403 14.510 -47.387 60.218 1.00 45.93 O
ATOM 4 OP2 G B2403 15.293 -44.961 59.946 1.00 45.30 O
ATOM 5 O5' G B2403 16.798 -46.664 61.052 1.00 45.45 O
ATOM 6 C5' G B2403 17.013 -47.957 61.612 1.00 45.69 C
ATOM 7 C4' G B2403 17.647 -47.877 62.976 1.00 45.54 C
ATOM 8 O4' G B2403 18.704 -46.898 62.941 1.00 45.20 O
ATOM 9 C3' G B2403 16.722 -47.447 64.120 1.00 45.48 C
ATOM 10 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 11 C2' G B2403 16.944 -45.948 64.170 1.00 45.11 C
ATOM 12 O2' G B2403 16.654 -45.373 65.417 1.00 44.97 O
ATOM 13 C1' G B2403 18.429 -45.860 63.861 1.00 44.95 C
ATOM 14 N9 G B2403 18.822 -44.617 63.230 1.00 44.67 N
ATOM 15 C8 G B2403 18.149 -43.925 62.254 1.00 44.63 C
ATOM 16 N7 G B2403 18.834 -42.860 61.889 1.00 44.36 N
ATOM 17 C5 G B2403 20.020 -42.882 62.639 1.00 44.21 C
ATOM 18 C6 G B2403 21.146 -42.033 62.682 1.00 43.93 C
ATOM 19 O6 G B2403 21.356 -40.996 62.048 1.00 43.74 O
ATOM 20 N1 G B2403 22.079 -42.463 63.593 1.00 43.90 N
ATOM 21 C2 G B2403 21.959 -43.574 64.353 1.00 44.12 C
ATOM 22 N2 G B2403 22.935 -43.870 65.206 1.00 44.07 N
ATOM 23 N3 G B2403 20.939 -44.368 64.322 1.00 44.37 N
ATOM 24 C4 G B2403 20.014 -43.969 63.460 1.00 44.40 C
ATOM 25 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 26 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 27 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 28 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
TER
ATOM 2 P G A2548 26.859 -38.865 71.160 1.00 38.84 P
ATOM 3 OP1 G A2548 27.717 -39.990 70.678 1.00 38.99 O
ATOM 4 OP2 G A2548 27.491 -37.614 71.612 1.00 38.59 O
ATOM 5 O5' G A2548 25.726 -38.519 70.089 1.00 38.83 O
ATOM 6 C5' G A2548 24.953 -39.541 69.470 1.00 39.07 C
ATOM 7 C4' G A2548 24.282 -39.060 68.196 1.00 39.03 C
ATOM 8 O4' G A2548 23.846 -40.227 67.449 1.00 39.28 O
ATOM 9 C3' G A2548 23.038 -38.186 68.385 1.00 38.96 C
ATOM 10 O3' G A2548 22.916 -37.245 67.314 1.00 38.82 O
ATOM 11 C2' G A2548 21.903 -39.202 68.311 1.00 39.23 C
ATOM 12 O2' G A2548 20.654 -38.675 67.926 1.00 39.25 O
ATOM 13 C1' G A2548 22.437 -40.217 67.293 1.00 39.39 C
ATOM 14 N9 G A2548 21.939 -41.593 67.522 1.00 39.69 N
ATOM 15 C8 G A2548 22.468 -42.622 68.297 1.00 39.85 C
ATOM 16 N7 G A2548 21.773 -43.712 68.295 1.00 40.13 N
ATOM 17 C5 G A2548 20.700 -43.385 67.491 1.00 40.16 C
ATOM 18 C6 G A2548 19.577 -44.154 67.104 1.00 40.43 C
ATOM 19 O6 G A2548 19.339 -45.337 67.439 1.00 40.71 O
ATOM 20 N1 G A2548 18.720 -43.440 66.256 1.00 40.38 N
ATOM 21 C2 G A2548 18.953 -42.170 65.830 1.00 40.11 C
ATOM 22 N2 G A2548 18.076 -41.641 65.003 1.00 40.11 N
ATOM 23 N3 G A2548 19.974 -41.427 66.177 1.00 39.86 N
ATOM 24 C4 G A2548 20.788 -42.102 67.006 1.00 39.90 C
ATOM 25 P C A2549 22.784 -35.665 67.637 1.00 42.80 P
ATOM 26 OP1 C A2549 22.176 -35.539 68.942 1.00 42.82 O
ATOM 27 OP2 C A2549 22.153 -35.011 66.478 1.00 42.76 O
ATOM 28 O5' C A2549 24.284 -35.217 67.737 1.00 42.61 O
TER
ATOM 1 O3' U B2402 16.309 -46.781 58.602 1.00 47.29 O
ATOM 2 P G B2403 15.617 -46.403 59.995 1.00 45.59 P
ATOM 3 OP1 G B2403 14.510 -47.387 60.218 1.00 45.93 O
ATOM 4 OP2 G B2403 15.293 -44.961 59.946 1.00 45.30 O
ATOM 5 O5' G B2403 16.798 -46.664 61.052 1.00 45.45 O
ATOM 6 C5' G B2403 17.013 -47.957 61.612 1.00 45.69 C
ATOM 7 C4' G B2403 17.647 -47.877 62.976 1.00 45.54 C
ATOM 8 O4' G B2403 18.704 -46.898 62.941 1.00 45.20 O
ATOM 9 C3' G B2403 16.722 -47.447 64.120 1.00 45.48 C
ATOM 10 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 11 C2' G B2403 16.944 -45.948 64.170 1.00 45.11 C
ATOM 12 O2' G B2403 16.654 -45.373 65.417 1.00 44.97 O
ATOM 13 C1' G B2403 18.429 -45.860 63.861 1.00 44.95 C
ATOM 14 N9 G B2403 18.822 -44.617 63.230 1.00 44.67 N
ATOM 15 C8 G B2403 18.149 -43.925 62.254 1.00 44.63 C
ATOM 16 N7 G B2403 18.834 -42.860 61.889 1.00 44.36 N
ATOM 17 C5 G B2403 20.020 -42.882 62.639 1.00 44.21 C
ATOM 18 C6 G B2403 21.146 -42.033 62.682 1.00 43.93 C
ATOM 19 O6 G B2403 21.356 -40.996 62.048 1.00 43.74 O
ATOM 20 N1 G B2403 22.079 -42.463 63.593 1.00 43.90 N
ATOM 21 C2 G B2403 21.959 -43.574 64.353 1.00 44.12 C
ATOM 22 N2 G B2403 22.935 -43.870 65.206 1.00 44.07 N
ATOM 23 N3 G B2403 20.939 -44.368 64.322 1.00 44.37 N
ATOM 24 C4 G B2403 20.014 -43.969 63.460 1.00 44.40 C
ATOM 25 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 26 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 27 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 28 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
TER
Atoms:
OP1: (27.717,-39.990,70.678)
OP2: (27.491,-37.614,71.612)
C3': (23.038,-38.186,68.385)
C1': (22.437,-40.217,67.293)
C5': (24.953,-39.541,69.470)
O6: (19.339,-45.337,67.439)
O4': (23.846,-40.227,67.449)
C8: (22.468,-42.622,68.297)
C2: (18.953,-42.170,65.830)
C6: (19.577,-44.154,67.104)
C5: (20.700,-43.385,67.491)
C4: (20.788,-42.102,67.006)
P: (26.859,-38.865,71.160)
C4': (24.282,-39.060,68.196)
C2': (21.903,-39.202,68.311)
O2': (20.654,-38.675,67.926)
N1: (18.720,-43.440,66.256)
N2: (18.076,-41.641,65.003)
N3: (19.974,-41.427,66.177)
N7: (21.773,-43.712,68.295)
N9: (21.939,-41.593,67.522)
O5': (25.726,-38.519,70.089)
O3': (22.916,-37.245,67.314)
OP2: (27.491,-37.614,71.612)
C3': (23.038,-38.186,68.385)
C1': (22.437,-40.217,67.293)
C5': (24.953,-39.541,69.470)
O6: (19.339,-45.337,67.439)
O4': (23.846,-40.227,67.449)
C8: (22.468,-42.622,68.297)
C2: (18.953,-42.170,65.830)
C6: (19.577,-44.154,67.104)
C5: (20.700,-43.385,67.491)
C4: (20.788,-42.102,67.006)
P: (26.859,-38.865,71.160)
C4': (24.282,-39.060,68.196)
C2': (21.903,-39.202,68.311)
O2': (20.654,-38.675,67.926)
N1: (18.720,-43.440,66.256)
N2: (18.076,-41.641,65.003)
N3: (19.974,-41.427,66.177)
N7: (21.773,-43.712,68.295)
N9: (21.939,-41.593,67.522)
O5': (25.726,-38.519,70.089)
O3': (22.916,-37.245,67.314)
OP1: (14.510,-47.387,60.218)
OP2: (15.293,-44.961,59.946)
C3': (16.722,-47.447,64.120)
C1': (18.429,-45.860,63.861)
C5': (17.013,-47.957,61.612)
O6: (21.356,-40.996,62.048)
O4': (18.704,-46.898,62.941)
C8: (18.149,-43.925,62.254)
C2: (21.959,-43.574,64.353)
C6: (21.146,-42.033,62.682)
C5: (20.020,-42.882,62.639)
C4: (20.014,-43.969,63.460)
P: (15.617,-46.403,59.995)
C4': (17.647,-47.877,62.976)
C2': (16.944,-45.948,64.170)
O2': (16.654,-45.373,65.417)
N1: (22.079,-42.463,63.593)
N2: (22.935,-43.870,65.206)
N3: (20.939,-44.368,64.322)
N7: (18.834,-42.860,61.889)
N9: (18.822,-44.617,63.230)
O5': (16.798,-46.664,61.052)
O3': (17.197,-47.992,65.348)
OP2: (15.293,-44.961,59.946)
C3': (16.722,-47.447,64.120)
C1': (18.429,-45.860,63.861)
C5': (17.013,-47.957,61.612)
O6: (21.356,-40.996,62.048)
O4': (18.704,-46.898,62.941)
C8: (18.149,-43.925,62.254)
C2: (21.959,-43.574,64.353)
C6: (21.146,-42.033,62.682)
C5: (20.020,-42.882,62.639)
C4: (20.014,-43.969,63.460)
P: (15.617,-46.403,59.995)
C4': (17.647,-47.877,62.976)
C2': (16.944,-45.948,64.170)
O2': (16.654,-45.373,65.417)
N1: (22.079,-42.463,63.593)
N2: (22.935,-43.870,65.206)
N3: (20.939,-44.368,64.322)
N7: (18.834,-42.860,61.889)
N9: (18.822,-44.617,63.230)
O5': (16.798,-46.664,61.052)
O3': (17.197,-47.992,65.348)
Image (generated by PyMOL):