Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02103:02088
Extra
PDB:
ATOM 1 O3' G A2102 124.358 116.106 44.204 1.00 94.92 O
ATOM 2 P G A2103 124.609 114.638 43.588 1.00 96.12 P
ATOM 3 OP1 G A2103 124.302 113.630 44.645 1.00 95.11 O
ATOM 4 OP2 G A2103 125.946 114.635 42.939 1.00 95.87 O
ATOM 5 O5' G A2103 123.517 114.496 42.433 1.00 93.80 O
ATOM 6 C5' G A2103 122.117 114.399 42.746 1.00 91.33 C
ATOM 7 C4' G A2103 121.316 114.109 41.501 1.00 89.91 C
ATOM 8 O4' G A2103 121.428 115.196 40.550 1.00 91.01 O
ATOM 9 C3' G A2103 121.770 112.896 40.723 1.00 88.57 C
ATOM 10 O3' G A2103 121.240 111.735 41.315 1.00 87.35 O
ATOM 11 C2' G A2103 121.205 113.162 39.336 1.00 89.76 C
ATOM 12 O2' G A2103 119.830 112.866 39.226 1.00 88.57 O
ATOM 13 C1' G A2103 121.388 114.676 39.229 1.00 91.46 C
ATOM 14 N9 G A2103 122.612 115.077 38.544 1.00 94.18 N
ATOM 15 C8 G A2103 123.862 115.225 39.098 1.00 95.65 C
ATOM 16 N7 G A2103 124.756 115.644 38.244 1.00 97.25 N
ATOM 17 C5 G A2103 124.058 115.773 37.049 1.00 96.65 C
ATOM 18 C6 G A2103 124.497 116.204 35.771 1.00 96.65 C
ATOM 19 O6 G A2103 125.626 116.587 35.432 1.00 96.97 O
ATOM 20 N1 G A2103 123.463 116.170 34.838 1.00 95.76 N
ATOM 21 C2 G A2103 122.174 115.783 35.102 1.00 94.69 C
ATOM 22 N2 G A2103 121.330 115.817 34.069 1.00 95.14 N
ATOM 23 N3 G A2103 121.748 115.391 36.289 1.00 95.13 N
ATOM 24 C4 G A2103 122.736 115.410 37.212 1.00 95.49 C
ATOM 25 P A A2104 122.097 110.388 41.304 1.00 88.34 P
ATOM 26 OP1 A A2104 121.529 109.492 42.350 1.00 88.59 O
ATOM 27 OP2 A A2104 123.539 110.772 41.368 1.00 88.38 O
ATOM 28 O5' A A2104 121.782 109.775 39.867 1.00 86.17 O
TER
ATOM 1 O3' C B2087 130.013 113.066 33.282 1.00100.06 O
ATOM 2 P U B2088 129.387 114.553 33.294 1.00 97.68 P
ATOM 3 OP1 U B2088 130.263 115.460 32.506 1.00 97.79 O
ATOM 4 OP2 U B2088 129.063 114.898 34.706 1.00 97.10 O
ATOM 5 O5' U B2088 128.041 114.403 32.462 1.00 95.97 O
ATOM 6 C5' U B2088 128.072 114.024 31.076 1.00 93.10 C
ATOM 7 C4' U B2088 126.687 114.112 30.488 1.00 91.85 C
ATOM 8 O4' U B2088 125.806 113.230 31.239 1.00 92.24 O
ATOM 9 C3' U B2088 126.028 115.490 30.528 1.00 91.13 C
ATOM 10 O3' U B2088 125.156 115.551 29.409 1.00 89.81 O
ATOM 11 C2' U B2088 125.234 115.434 31.831 1.00 91.30 C
ATOM 12 O2' U B2088 124.132 116.316 31.899 1.00 90.07 O
ATOM 13 C1' U B2088 124.753 113.985 31.815 1.00 92.52 C
ATOM 14 N1 U B2088 124.429 113.432 33.142 1.00 92.93 N
ATOM 15 C2 U B2088 123.095 113.203 33.428 1.00 92.87 C
ATOM 16 O2 U B2088 122.199 113.433 32.636 1.00 92.80 O
ATOM 17 N3 U B2088 122.849 112.689 34.675 1.00 93.44 N
ATOM 18 C4 U B2088 123.777 112.384 35.648 1.00 94.31 C
ATOM 19 O4 U B2088 123.396 111.906 36.720 1.00 94.88 O
ATOM 20 C5 U B2088 125.133 112.650 35.282 1.00 93.35 C
ATOM 21 C6 U B2088 125.407 113.151 34.074 1.00 92.87 C
ATOM 22 P C B2089 124.610 116.964 28.870 1.00 89.59 P
ATOM 23 OP1 C B2089 125.589 117.484 27.889 1.00 89.73 O
ATOM 24 OP2 C B2089 124.204 117.820 30.019 1.00 89.90 O
ATOM 25 O5' C B2089 123.304 116.506 28.075 1.00 88.93 O
TER
ATOM 2 P G A2103 124.609 114.638 43.588 1.00 96.12 P
ATOM 3 OP1 G A2103 124.302 113.630 44.645 1.00 95.11 O
ATOM 4 OP2 G A2103 125.946 114.635 42.939 1.00 95.87 O
ATOM 5 O5' G A2103 123.517 114.496 42.433 1.00 93.80 O
ATOM 6 C5' G A2103 122.117 114.399 42.746 1.00 91.33 C
ATOM 7 C4' G A2103 121.316 114.109 41.501 1.00 89.91 C
ATOM 8 O4' G A2103 121.428 115.196 40.550 1.00 91.01 O
ATOM 9 C3' G A2103 121.770 112.896 40.723 1.00 88.57 C
ATOM 10 O3' G A2103 121.240 111.735 41.315 1.00 87.35 O
ATOM 11 C2' G A2103 121.205 113.162 39.336 1.00 89.76 C
ATOM 12 O2' G A2103 119.830 112.866 39.226 1.00 88.57 O
ATOM 13 C1' G A2103 121.388 114.676 39.229 1.00 91.46 C
ATOM 14 N9 G A2103 122.612 115.077 38.544 1.00 94.18 N
ATOM 15 C8 G A2103 123.862 115.225 39.098 1.00 95.65 C
ATOM 16 N7 G A2103 124.756 115.644 38.244 1.00 97.25 N
ATOM 17 C5 G A2103 124.058 115.773 37.049 1.00 96.65 C
ATOM 18 C6 G A2103 124.497 116.204 35.771 1.00 96.65 C
ATOM 19 O6 G A2103 125.626 116.587 35.432 1.00 96.97 O
ATOM 20 N1 G A2103 123.463 116.170 34.838 1.00 95.76 N
ATOM 21 C2 G A2103 122.174 115.783 35.102 1.00 94.69 C
ATOM 22 N2 G A2103 121.330 115.817 34.069 1.00 95.14 N
ATOM 23 N3 G A2103 121.748 115.391 36.289 1.00 95.13 N
ATOM 24 C4 G A2103 122.736 115.410 37.212 1.00 95.49 C
ATOM 25 P A A2104 122.097 110.388 41.304 1.00 88.34 P
ATOM 26 OP1 A A2104 121.529 109.492 42.350 1.00 88.59 O
ATOM 27 OP2 A A2104 123.539 110.772 41.368 1.00 88.38 O
ATOM 28 O5' A A2104 121.782 109.775 39.867 1.00 86.17 O
TER
ATOM 1 O3' C B2087 130.013 113.066 33.282 1.00100.06 O
ATOM 2 P U B2088 129.387 114.553 33.294 1.00 97.68 P
ATOM 3 OP1 U B2088 130.263 115.460 32.506 1.00 97.79 O
ATOM 4 OP2 U B2088 129.063 114.898 34.706 1.00 97.10 O
ATOM 5 O5' U B2088 128.041 114.403 32.462 1.00 95.97 O
ATOM 6 C5' U B2088 128.072 114.024 31.076 1.00 93.10 C
ATOM 7 C4' U B2088 126.687 114.112 30.488 1.00 91.85 C
ATOM 8 O4' U B2088 125.806 113.230 31.239 1.00 92.24 O
ATOM 9 C3' U B2088 126.028 115.490 30.528 1.00 91.13 C
ATOM 10 O3' U B2088 125.156 115.551 29.409 1.00 89.81 O
ATOM 11 C2' U B2088 125.234 115.434 31.831 1.00 91.30 C
ATOM 12 O2' U B2088 124.132 116.316 31.899 1.00 90.07 O
ATOM 13 C1' U B2088 124.753 113.985 31.815 1.00 92.52 C
ATOM 14 N1 U B2088 124.429 113.432 33.142 1.00 92.93 N
ATOM 15 C2 U B2088 123.095 113.203 33.428 1.00 92.87 C
ATOM 16 O2 U B2088 122.199 113.433 32.636 1.00 92.80 O
ATOM 17 N3 U B2088 122.849 112.689 34.675 1.00 93.44 N
ATOM 18 C4 U B2088 123.777 112.384 35.648 1.00 94.31 C
ATOM 19 O4 U B2088 123.396 111.906 36.720 1.00 94.88 O
ATOM 20 C5 U B2088 125.133 112.650 35.282 1.00 93.35 C
ATOM 21 C6 U B2088 125.407 113.151 34.074 1.00 92.87 C
ATOM 22 P C B2089 124.610 116.964 28.870 1.00 89.59 P
ATOM 23 OP1 C B2089 125.589 117.484 27.889 1.00 89.73 O
ATOM 24 OP2 C B2089 124.204 117.820 30.019 1.00 89.90 O
ATOM 25 O5' C B2089 123.304 116.506 28.075 1.00 88.93 O
TER
Atoms:
OP1: (124.302,113.630,44.645)
OP2: (125.946,114.635,42.939)
C3': (121.770,112.896,40.723)
C1': (121.388,114.676,39.229)
C5': (122.117,114.399,42.746)
O6: (125.626,116.587,35.432)
O4': (121.428,115.196,40.550)
C8: (123.862,115.225,39.098)
C2: (122.174,115.783,35.102)
C6: (124.497,116.204,35.771)
C5: (124.058,115.773,37.049)
C4: (122.736,115.410,37.212)
P: (124.609,114.638,43.588)
C4': (121.316,114.109,41.501)
C2': (121.205,113.162,39.336)
O2': (119.830,112.866,39.226)
N1: (123.463,116.170,34.838)
N2: (121.330,115.817,34.069)
N3: (121.748,115.391,36.289)
N7: (124.756,115.644,38.244)
N9: (122.612,115.077,38.544)
O5': (123.517,114.496,42.433)
O3': (121.240,111.735,41.315)
OP2: (125.946,114.635,42.939)
C3': (121.770,112.896,40.723)
C1': (121.388,114.676,39.229)
C5': (122.117,114.399,42.746)
O6: (125.626,116.587,35.432)
O4': (121.428,115.196,40.550)
C8: (123.862,115.225,39.098)
C2: (122.174,115.783,35.102)
C6: (124.497,116.204,35.771)
C5: (124.058,115.773,37.049)
C4: (122.736,115.410,37.212)
P: (124.609,114.638,43.588)
C4': (121.316,114.109,41.501)
C2': (121.205,113.162,39.336)
O2': (119.830,112.866,39.226)
N1: (123.463,116.170,34.838)
N2: (121.330,115.817,34.069)
N3: (121.748,115.391,36.289)
N7: (124.756,115.644,38.244)
N9: (122.612,115.077,38.544)
O5': (123.517,114.496,42.433)
O3': (121.240,111.735,41.315)
C4: (123.777,112.384,35.648)
N3: (122.849,112.689,34.675)
OP1: (130.263,115.460,32.506)
OP2: (129.063,114.898,34.706)
C2: (123.095,113.203,33.428)
C1': (124.753,113.985,31.815)
C3': (126.028,115.490,30.528)
O5': (128.041,114.403,32.462)
O4': (125.806,113.230,31.239)
C5': (128.072,114.024,31.076)
P: (129.387,114.553,33.294)
C4': (126.687,114.112,30.488)
C2': (125.234,115.434,31.831)
O2': (124.132,116.316,31.899)
N1: (124.429,113.432,33.142)
O4: (123.396,111.906,36.720)
O2: (122.199,113.433,32.636)
C6: (125.407,113.151,34.074)
C5: (125.133,112.650,35.282)
O3': (125.156,115.551,29.409)
N3: (122.849,112.689,34.675)
OP1: (130.263,115.460,32.506)
OP2: (129.063,114.898,34.706)
C2: (123.095,113.203,33.428)
C1': (124.753,113.985,31.815)
C3': (126.028,115.490,30.528)
O5': (128.041,114.403,32.462)
O4': (125.806,113.230,31.239)
C5': (128.072,114.024,31.076)
P: (129.387,114.553,33.294)
C4': (126.687,114.112,30.488)
C2': (125.234,115.434,31.831)
O2': (124.132,116.316,31.899)
N1: (124.429,113.432,33.142)
O4: (123.396,111.906,36.720)
O2: (122.199,113.433,32.636)
C6: (125.407,113.151,34.074)
C5: (125.133,112.650,35.282)
O3': (125.156,115.551,29.409)
Image (generated by PyMOL):