Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02019:02448
Extra
PDB:
ATOM 1 O3' G A2018 52.420 112.684 107.680 1.00 44.19 O
ATOM 2 P G A2019 52.807 114.238 107.721 1.00 45.89 P
ATOM 3 OP1 G A2019 53.333 114.611 106.380 1.00 44.21 O
ATOM 4 OP2 G A2019 53.632 114.472 108.928 1.00 47.43 O
ATOM 5 O5' G A2019 51.424 114.989 107.972 1.00 45.39 O
ATOM 6 C5' G A2019 50.679 115.509 106.863 1.00 45.06 C
ATOM 7 C4' G A2019 50.763 117.021 106.815 1.00 42.25 C
ATOM 8 O4' G A2019 52.046 117.508 107.330 1.00 42.11 O
ATOM 9 C3' G A2019 50.646 117.568 105.396 1.00 39.01 C
ATOM 10 O3' G A2019 49.939 118.798 105.422 1.00 37.60 O
ATOM 11 C2' G A2019 52.109 117.794 105.025 1.00 37.81 C
ATOM 12 O2' G A2019 52.331 118.704 103.972 1.00 34.32 O
ATOM 13 C1' G A2019 52.649 118.326 106.350 1.00 39.24 C
ATOM 14 N9 G A2019 54.103 118.330 106.508 1.00 37.70 N
ATOM 15 C8 G A2019 55.018 118.045 105.532 1.00 37.53 C
ATOM 16 N7 G A2019 56.249 118.237 105.909 1.00 38.45 N
ATOM 17 C5 G A2019 56.147 118.655 107.224 1.00 38.01 C
ATOM 18 C6 G A2019 57.160 119.030 108.142 1.00 37.70 C
ATOM 19 O6 G A2019 58.370 119.096 107.956 1.00 37.15 O
ATOM 20 N1 G A2019 56.638 119.363 109.382 1.00 38.14 N
ATOM 21 C2 G A2019 55.309 119.349 109.701 1.00 39.68 C
ATOM 22 N2 G A2019 55.020 119.696 110.965 1.00 38.06 N
ATOM 23 N3 G A2019 54.339 119.018 108.844 1.00 40.07 N
ATOM 24 C4 G A2019 54.833 118.686 107.627 1.00 38.29 C
ATOM 25 P A A2020 48.380 118.824 105.047 1.00 35.87 P
ATOM 26 OP1 A A2020 47.664 118.242 106.208 1.00 34.77 O
ATOM 27 OP2 A A2020 48.182 118.245 103.704 1.00 36.94 O
ATOM 28 O5' A A2020 48.050 120.371 104.914 1.00 36.14 O
TER
ATOM 1 O3' G B2447 56.910 122.898 114.718 1.00 33.44 O
ATOM 2 P U B2448 57.062 123.796 113.395 1.00 34.25 P
ATOM 3 OP1 U B2448 57.357 125.189 113.787 1.00 35.32 O
ATOM 4 OP2 U B2448 55.882 123.516 112.562 1.00 34.06 O
ATOM 5 O5' U B2448 58.340 123.220 112.641 1.00 33.08 O
ATOM 6 C5' U B2448 58.788 121.874 112.853 1.00 34.36 C
ATOM 7 C4' U B2448 59.548 121.381 111.643 1.00 35.34 C
ATOM 8 O4' U B2448 58.620 121.115 110.557 1.00 36.94 O
ATOM 9 C3' U B2448 60.600 122.328 111.066 1.00 34.65 C
ATOM 10 O3' U B2448 61.607 121.520 110.478 1.00 33.01 O
ATOM 11 C2' U B2448 59.832 123.013 109.941 1.00 36.41 C
ATOM 12 O2' U B2448 60.663 123.535 108.924 1.00 36.36 O
ATOM 13 C1' U B2448 59.039 121.827 109.409 1.00 37.94 C
ATOM 14 N1 U B2448 57.876 122.096 108.553 1.00 39.27 N
ATOM 15 C2 U B2448 58.058 122.006 107.176 1.00 39.01 C
ATOM 16 O2 U B2448 59.150 121.835 106.652 1.00 35.58 O
ATOM 17 N3 U B2448 56.909 122.132 106.436 1.00 39.98 N
ATOM 18 C4 U B2448 55.632 122.358 106.914 1.00 41.24 C
ATOM 19 O4 U B2448 54.682 122.284 106.139 1.00 43.09 O
ATOM 20 C5 U B2448 55.541 122.514 108.335 1.00 40.43 C
ATOM 21 C6 U B2448 56.637 122.383 109.087 1.00 39.97 C
ATOM 22 P C B2449 63.145 121.947 110.574 1.00 32.49 P
ATOM 23 OP1 C B2449 63.263 123.143 111.437 1.00 33.52 O
ATOM 24 OP2 C B2449 63.680 121.992 109.200 1.00 31.23 O
ATOM 25 O5' C B2449 63.810 120.710 111.323 1.00 34.05 O
TER
ATOM 2 P G A2019 52.807 114.238 107.721 1.00 45.89 P
ATOM 3 OP1 G A2019 53.333 114.611 106.380 1.00 44.21 O
ATOM 4 OP2 G A2019 53.632 114.472 108.928 1.00 47.43 O
ATOM 5 O5' G A2019 51.424 114.989 107.972 1.00 45.39 O
ATOM 6 C5' G A2019 50.679 115.509 106.863 1.00 45.06 C
ATOM 7 C4' G A2019 50.763 117.021 106.815 1.00 42.25 C
ATOM 8 O4' G A2019 52.046 117.508 107.330 1.00 42.11 O
ATOM 9 C3' G A2019 50.646 117.568 105.396 1.00 39.01 C
ATOM 10 O3' G A2019 49.939 118.798 105.422 1.00 37.60 O
ATOM 11 C2' G A2019 52.109 117.794 105.025 1.00 37.81 C
ATOM 12 O2' G A2019 52.331 118.704 103.972 1.00 34.32 O
ATOM 13 C1' G A2019 52.649 118.326 106.350 1.00 39.24 C
ATOM 14 N9 G A2019 54.103 118.330 106.508 1.00 37.70 N
ATOM 15 C8 G A2019 55.018 118.045 105.532 1.00 37.53 C
ATOM 16 N7 G A2019 56.249 118.237 105.909 1.00 38.45 N
ATOM 17 C5 G A2019 56.147 118.655 107.224 1.00 38.01 C
ATOM 18 C6 G A2019 57.160 119.030 108.142 1.00 37.70 C
ATOM 19 O6 G A2019 58.370 119.096 107.956 1.00 37.15 O
ATOM 20 N1 G A2019 56.638 119.363 109.382 1.00 38.14 N
ATOM 21 C2 G A2019 55.309 119.349 109.701 1.00 39.68 C
ATOM 22 N2 G A2019 55.020 119.696 110.965 1.00 38.06 N
ATOM 23 N3 G A2019 54.339 119.018 108.844 1.00 40.07 N
ATOM 24 C4 G A2019 54.833 118.686 107.627 1.00 38.29 C
ATOM 25 P A A2020 48.380 118.824 105.047 1.00 35.87 P
ATOM 26 OP1 A A2020 47.664 118.242 106.208 1.00 34.77 O
ATOM 27 OP2 A A2020 48.182 118.245 103.704 1.00 36.94 O
ATOM 28 O5' A A2020 48.050 120.371 104.914 1.00 36.14 O
TER
ATOM 1 O3' G B2447 56.910 122.898 114.718 1.00 33.44 O
ATOM 2 P U B2448 57.062 123.796 113.395 1.00 34.25 P
ATOM 3 OP1 U B2448 57.357 125.189 113.787 1.00 35.32 O
ATOM 4 OP2 U B2448 55.882 123.516 112.562 1.00 34.06 O
ATOM 5 O5' U B2448 58.340 123.220 112.641 1.00 33.08 O
ATOM 6 C5' U B2448 58.788 121.874 112.853 1.00 34.36 C
ATOM 7 C4' U B2448 59.548 121.381 111.643 1.00 35.34 C
ATOM 8 O4' U B2448 58.620 121.115 110.557 1.00 36.94 O
ATOM 9 C3' U B2448 60.600 122.328 111.066 1.00 34.65 C
ATOM 10 O3' U B2448 61.607 121.520 110.478 1.00 33.01 O
ATOM 11 C2' U B2448 59.832 123.013 109.941 1.00 36.41 C
ATOM 12 O2' U B2448 60.663 123.535 108.924 1.00 36.36 O
ATOM 13 C1' U B2448 59.039 121.827 109.409 1.00 37.94 C
ATOM 14 N1 U B2448 57.876 122.096 108.553 1.00 39.27 N
ATOM 15 C2 U B2448 58.058 122.006 107.176 1.00 39.01 C
ATOM 16 O2 U B2448 59.150 121.835 106.652 1.00 35.58 O
ATOM 17 N3 U B2448 56.909 122.132 106.436 1.00 39.98 N
ATOM 18 C4 U B2448 55.632 122.358 106.914 1.00 41.24 C
ATOM 19 O4 U B2448 54.682 122.284 106.139 1.00 43.09 O
ATOM 20 C5 U B2448 55.541 122.514 108.335 1.00 40.43 C
ATOM 21 C6 U B2448 56.637 122.383 109.087 1.00 39.97 C
ATOM 22 P C B2449 63.145 121.947 110.574 1.00 32.49 P
ATOM 23 OP1 C B2449 63.263 123.143 111.437 1.00 33.52 O
ATOM 24 OP2 C B2449 63.680 121.992 109.200 1.00 31.23 O
ATOM 25 O5' C B2449 63.810 120.710 111.323 1.00 34.05 O
TER
Atoms:
OP1: (53.333,114.611,106.380)
OP2: (53.632,114.472,108.928)
C3': (50.646,117.568,105.396)
C1': (52.649,118.326,106.350)
C5': (50.679,115.509,106.863)
O6: (58.370,119.096,107.956)
O4': (52.046,117.508,107.330)
C8: (55.018,118.045,105.532)
C2: (55.309,119.349,109.701)
C6: (57.160,119.030,108.142)
C5: (56.147,118.655,107.224)
C4: (54.833,118.686,107.627)
P: (52.807,114.238,107.721)
C4': (50.763,117.021,106.815)
C2': (52.109,117.794,105.025)
O2': (52.331,118.704,103.972)
N1: (56.638,119.363,109.382)
N2: (55.020,119.696,110.965)
N3: (54.339,119.018,108.844)
N7: (56.249,118.237,105.909)
N9: (54.103,118.330,106.508)
O5': (51.424,114.989,107.972)
O3': (49.939,118.798,105.422)
OP2: (53.632,114.472,108.928)
C3': (50.646,117.568,105.396)
C1': (52.649,118.326,106.350)
C5': (50.679,115.509,106.863)
O6: (58.370,119.096,107.956)
O4': (52.046,117.508,107.330)
C8: (55.018,118.045,105.532)
C2: (55.309,119.349,109.701)
C6: (57.160,119.030,108.142)
C5: (56.147,118.655,107.224)
C4: (54.833,118.686,107.627)
P: (52.807,114.238,107.721)
C4': (50.763,117.021,106.815)
C2': (52.109,117.794,105.025)
O2': (52.331,118.704,103.972)
N1: (56.638,119.363,109.382)
N2: (55.020,119.696,110.965)
N3: (54.339,119.018,108.844)
N7: (56.249,118.237,105.909)
N9: (54.103,118.330,106.508)
O5': (51.424,114.989,107.972)
O3': (49.939,118.798,105.422)
C4: (55.632,122.358,106.914)
N3: (56.909,122.132,106.436)
OP1: (57.357,125.189,113.787)
OP2: (55.882,123.516,112.562)
C2: (58.058,122.006,107.176)
C1': (59.039,121.827,109.409)
C3': (60.600,122.328,111.066)
O5': (58.340,123.220,112.641)
O4': (58.620,121.115,110.557)
C5': (58.788,121.874,112.853)
P: (57.062,123.796,113.395)
C4': (59.548,121.381,111.643)
C2': (59.832,123.013,109.941)
O2': (60.663,123.535,108.924)
N1: (57.876,122.096,108.553)
O4: (54.682,122.284,106.139)
O2: (59.150,121.835,106.652)
C6: (56.637,122.383,109.087)
C5: (55.541,122.514,108.335)
O3': (61.607,121.520,110.478)
N3: (56.909,122.132,106.436)
OP1: (57.357,125.189,113.787)
OP2: (55.882,123.516,112.562)
C2: (58.058,122.006,107.176)
C1': (59.039,121.827,109.409)
C3': (60.600,122.328,111.066)
O5': (58.340,123.220,112.641)
O4': (58.620,121.115,110.557)
C5': (58.788,121.874,112.853)
P: (57.062,123.796,113.395)
C4': (59.548,121.381,111.643)
C2': (59.832,123.013,109.941)
O2': (60.663,123.535,108.924)
N1: (57.876,122.096,108.553)
O4: (54.682,122.284,106.139)
O2: (59.150,121.835,106.652)
C6: (56.637,122.383,109.087)
C5: (55.541,122.514,108.335)
O3': (61.607,121.520,110.478)
Image (generated by PyMOL):