Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2JLY:D5:D4
Extra
PDB:
ATOM 1 O3' U A 4 -32.752 -15.155 -25.567 1.00 61.39 O
ATOM 2 P A A 5 -33.014 -13.973 -24.510 1.00 63.88 P
ATOM 3 OP1 A A 5 -34.331 -14.247 -23.886 1.00 64.41 O
ATOM 4 OP2 A A 5 -31.816 -13.798 -23.655 1.00 63.60 O
ATOM 5 O5' A A 5 -33.183 -12.675 -25.426 1.00 65.18 O
ATOM 6 C5' A A 5 -32.091 -12.053 -26.095 1.00 67.61 C
ATOM 7 C4' A A 5 -32.513 -11.645 -27.496 1.00 69.37 C
ATOM 8 O4' A A 5 -32.755 -12.831 -28.287 1.00 69.98 O
ATOM 9 C3' A A 5 -33.821 -10.868 -27.599 1.00 70.23 C
ATOM 10 O3' A A 5 -33.606 -9.486 -27.351 1.00 71.44 O
ATOM 11 C2' A A 5 -34.250 -11.142 -29.036 1.00 70.37 C
ATOM 12 O2' A A 5 -33.611 -10.297 -29.978 1.00 69.62 O
ATOM 13 C1' A A 5 -33.802 -12.594 -29.210 1.00 70.91 C
ATOM 14 N9 A A 5 -34.838 -13.592 -28.959 1.00 71.25 N
ATOM 15 C8 A A 5 -34.883 -14.455 -27.900 1.00 71.47 C
ATOM 16 N7 A A 5 -35.920 -15.254 -27.911 1.00 71.79 N
ATOM 17 C5 A A 5 -36.605 -14.894 -29.061 1.00 71.79 C
ATOM 18 C6 A A 5 -37.801 -15.374 -29.646 1.00 71.68 C
ATOM 19 N6 A A 5 -38.528 -16.360 -29.107 1.00 71.37 N
ATOM 20 N1 A A 5 -38.216 -14.797 -30.804 1.00 71.61 N
ATOM 21 C2 A A 5 -37.481 -13.806 -31.337 1.00 71.51 C
ATOM 22 N3 A A 5 -36.344 -13.277 -30.876 1.00 71.51 N
ATOM 23 C4 A A 5 -35.952 -13.868 -29.726 1.00 71.56 C
ATOM 24 P A A 6 -34.543 -8.692 -26.323 1.00 72.10 P
ATOM 25 OP1 A A 6 -33.833 -7.450 -25.929 1.00 72.25 O
ATOM 26 OP2 A A 6 -34.999 -9.636 -25.274 1.00 72.01 O
ATOM 27 O5' A A 6 -35.801 -8.321 -27.241 1.00 72.97 O
TER
ATOM 1 O3' C B 3 -26.861 -15.912 -28.453 1.00 36.98 O
ATOM 2 P U B 4 -27.218 -15.408 -26.985 1.00 39.60 P
ATOM 3 OP1 U B 4 -26.389 -16.146 -26.016 1.00 39.40 O
ATOM 4 OP2 U B 4 -27.182 -13.936 -27.027 1.00 40.88 O
ATOM 5 O5' U B 4 -28.739 -15.847 -26.776 1.00 44.02 O
ATOM 6 C5' U B 4 -29.811 -15.354 -27.579 1.00 49.77 C
ATOM 7 C4' U B 4 -31.103 -16.025 -27.151 1.00 54.73 C
ATOM 8 O4' U B 4 -30.978 -17.470 -27.269 1.00 56.24 O
ATOM 9 C3' U B 4 -31.449 -15.731 -25.691 1.00 57.97 C
ATOM 10 O3' U B 4 -32.752 -15.155 -25.567 1.00 61.39 O
ATOM 11 C2' U B 4 -31.305 -17.075 -24.982 1.00 58.15 C
ATOM 12 O2' U B 4 -32.220 -17.271 -23.921 1.00 58.94 O
ATOM 13 C1' U B 4 -31.554 -18.064 -26.122 1.00 58.34 C
ATOM 14 N1 U B 4 -30.970 -19.417 -25.802 1.00 58.66 N
ATOM 15 C2 U B 4 -31.755 -20.561 -25.892 1.00 59.12 C
ATOM 16 O2 U B 4 -32.918 -20.573 -26.256 1.00 59.43 O
ATOM 17 N3 U B 4 -31.118 -21.731 -25.546 1.00 59.38 N
ATOM 18 C4 U B 4 -29.806 -21.868 -25.113 1.00 59.34 C
ATOM 19 O4 U B 4 -29.365 -22.980 -24.840 1.00 59.08 O
ATOM 20 C5 U B 4 -29.057 -20.638 -25.036 1.00 59.28 C
ATOM 21 C6 U B 4 -29.656 -19.488 -25.372 1.00 58.61 C
ATOM 22 P A B 5 -33.014 -13.973 -24.510 1.00 63.88 P
ATOM 23 OP1 A B 5 -34.331 -14.247 -23.886 1.00 64.41 O
ATOM 24 OP2 A B 5 -31.816 -13.798 -23.655 1.00 63.60 O
ATOM 25 O5' A B 5 -33.183 -12.675 -25.426 1.00 65.18 O
TER
ATOM 2 P A A 5 -33.014 -13.973 -24.510 1.00 63.88 P
ATOM 3 OP1 A A 5 -34.331 -14.247 -23.886 1.00 64.41 O
ATOM 4 OP2 A A 5 -31.816 -13.798 -23.655 1.00 63.60 O
ATOM 5 O5' A A 5 -33.183 -12.675 -25.426 1.00 65.18 O
ATOM 6 C5' A A 5 -32.091 -12.053 -26.095 1.00 67.61 C
ATOM 7 C4' A A 5 -32.513 -11.645 -27.496 1.00 69.37 C
ATOM 8 O4' A A 5 -32.755 -12.831 -28.287 1.00 69.98 O
ATOM 9 C3' A A 5 -33.821 -10.868 -27.599 1.00 70.23 C
ATOM 10 O3' A A 5 -33.606 -9.486 -27.351 1.00 71.44 O
ATOM 11 C2' A A 5 -34.250 -11.142 -29.036 1.00 70.37 C
ATOM 12 O2' A A 5 -33.611 -10.297 -29.978 1.00 69.62 O
ATOM 13 C1' A A 5 -33.802 -12.594 -29.210 1.00 70.91 C
ATOM 14 N9 A A 5 -34.838 -13.592 -28.959 1.00 71.25 N
ATOM 15 C8 A A 5 -34.883 -14.455 -27.900 1.00 71.47 C
ATOM 16 N7 A A 5 -35.920 -15.254 -27.911 1.00 71.79 N
ATOM 17 C5 A A 5 -36.605 -14.894 -29.061 1.00 71.79 C
ATOM 18 C6 A A 5 -37.801 -15.374 -29.646 1.00 71.68 C
ATOM 19 N6 A A 5 -38.528 -16.360 -29.107 1.00 71.37 N
ATOM 20 N1 A A 5 -38.216 -14.797 -30.804 1.00 71.61 N
ATOM 21 C2 A A 5 -37.481 -13.806 -31.337 1.00 71.51 C
ATOM 22 N3 A A 5 -36.344 -13.277 -30.876 1.00 71.51 N
ATOM 23 C4 A A 5 -35.952 -13.868 -29.726 1.00 71.56 C
ATOM 24 P A A 6 -34.543 -8.692 -26.323 1.00 72.10 P
ATOM 25 OP1 A A 6 -33.833 -7.450 -25.929 1.00 72.25 O
ATOM 26 OP2 A A 6 -34.999 -9.636 -25.274 1.00 72.01 O
ATOM 27 O5' A A 6 -35.801 -8.321 -27.241 1.00 72.97 O
TER
ATOM 1 O3' C B 3 -26.861 -15.912 -28.453 1.00 36.98 O
ATOM 2 P U B 4 -27.218 -15.408 -26.985 1.00 39.60 P
ATOM 3 OP1 U B 4 -26.389 -16.146 -26.016 1.00 39.40 O
ATOM 4 OP2 U B 4 -27.182 -13.936 -27.027 1.00 40.88 O
ATOM 5 O5' U B 4 -28.739 -15.847 -26.776 1.00 44.02 O
ATOM 6 C5' U B 4 -29.811 -15.354 -27.579 1.00 49.77 C
ATOM 7 C4' U B 4 -31.103 -16.025 -27.151 1.00 54.73 C
ATOM 8 O4' U B 4 -30.978 -17.470 -27.269 1.00 56.24 O
ATOM 9 C3' U B 4 -31.449 -15.731 -25.691 1.00 57.97 C
ATOM 10 O3' U B 4 -32.752 -15.155 -25.567 1.00 61.39 O
ATOM 11 C2' U B 4 -31.305 -17.075 -24.982 1.00 58.15 C
ATOM 12 O2' U B 4 -32.220 -17.271 -23.921 1.00 58.94 O
ATOM 13 C1' U B 4 -31.554 -18.064 -26.122 1.00 58.34 C
ATOM 14 N1 U B 4 -30.970 -19.417 -25.802 1.00 58.66 N
ATOM 15 C2 U B 4 -31.755 -20.561 -25.892 1.00 59.12 C
ATOM 16 O2 U B 4 -32.918 -20.573 -26.256 1.00 59.43 O
ATOM 17 N3 U B 4 -31.118 -21.731 -25.546 1.00 59.38 N
ATOM 18 C4 U B 4 -29.806 -21.868 -25.113 1.00 59.34 C
ATOM 19 O4 U B 4 -29.365 -22.980 -24.840 1.00 59.08 O
ATOM 20 C5 U B 4 -29.057 -20.638 -25.036 1.00 59.28 C
ATOM 21 C6 U B 4 -29.656 -19.488 -25.372 1.00 58.61 C
ATOM 22 P A B 5 -33.014 -13.973 -24.510 1.00 63.88 P
ATOM 23 OP1 A B 5 -34.331 -14.247 -23.886 1.00 64.41 O
ATOM 24 OP2 A B 5 -31.816 -13.798 -23.655 1.00 63.60 O
ATOM 25 O5' A B 5 -33.183 -12.675 -25.426 1.00 65.18 O
TER
Atoms:
OP1: (-34.331,-14.247,-23.886)
OP2: (-31.816,-13.798,-23.655)
C3': (-33.821,-10.868,-27.599)
C1': (-33.802,-12.594,-29.210)
C5': (-32.091,-12.053,-26.095)
O4': (-32.755,-12.831,-28.287)
C8: (-34.883,-14.455,-27.900)
O2': (-33.611,-10.297,-29.978)
C6: (-37.801,-15.374,-29.646)
C5: (-36.605,-14.894,-29.061)
C4: (-35.952,-13.868,-29.726)
P: (-33.014,-13.973,-24.510)
C4': (-32.513,-11.645,-27.496)
C2': (-34.250,-11.142,-29.036)
C2: (-37.481,-13.806,-31.337)
N1: (-38.216,-14.797,-30.804)
N3: (-36.344,-13.277,-30.876)
N6: (-38.528,-16.360,-29.107)
N7: (-35.920,-15.254,-27.911)
N9: (-34.838,-13.592,-28.959)
O5': (-33.183,-12.675,-25.426)
O3': (-33.606,-9.486,-27.351)
OP2: (-31.816,-13.798,-23.655)
C3': (-33.821,-10.868,-27.599)
C1': (-33.802,-12.594,-29.210)
C5': (-32.091,-12.053,-26.095)
O4': (-32.755,-12.831,-28.287)
C8: (-34.883,-14.455,-27.900)
O2': (-33.611,-10.297,-29.978)
C6: (-37.801,-15.374,-29.646)
C5: (-36.605,-14.894,-29.061)
C4: (-35.952,-13.868,-29.726)
P: (-33.014,-13.973,-24.510)
C4': (-32.513,-11.645,-27.496)
C2': (-34.250,-11.142,-29.036)
C2: (-37.481,-13.806,-31.337)
N1: (-38.216,-14.797,-30.804)
N3: (-36.344,-13.277,-30.876)
N6: (-38.528,-16.360,-29.107)
N7: (-35.920,-15.254,-27.911)
N9: (-34.838,-13.592,-28.959)
O5': (-33.183,-12.675,-25.426)
O3': (-33.606,-9.486,-27.351)
C4: (-29.806,-21.868,-25.113)
N3: (-31.118,-21.731,-25.546)
OP1: (-26.389,-16.146,-26.016)
OP2: (-27.182,-13.936,-27.027)
C2: (-31.755,-20.561,-25.892)
C1': (-31.554,-18.064,-26.122)
C3': (-31.449,-15.731,-25.691)
O5': (-28.739,-15.847,-26.776)
O4': (-30.978,-17.470,-27.269)
C5': (-29.811,-15.354,-27.579)
P: (-27.218,-15.408,-26.985)
C4': (-31.103,-16.025,-27.151)
C2': (-31.305,-17.075,-24.982)
O2': (-32.220,-17.271,-23.921)
N1: (-30.970,-19.417,-25.802)
O4: (-29.365,-22.980,-24.840)
O2: (-32.918,-20.573,-26.256)
C6: (-29.656,-19.488,-25.372)
C5: (-29.057,-20.638,-25.036)
O3': (-32.752,-15.155,-25.567)
N3: (-31.118,-21.731,-25.546)
OP1: (-26.389,-16.146,-26.016)
OP2: (-27.182,-13.936,-27.027)
C2: (-31.755,-20.561,-25.892)
C1': (-31.554,-18.064,-26.122)
C3': (-31.449,-15.731,-25.691)
O5': (-28.739,-15.847,-26.776)
O4': (-30.978,-17.470,-27.269)
C5': (-29.811,-15.354,-27.579)
P: (-27.218,-15.408,-26.985)
C4': (-31.103,-16.025,-27.151)
C2': (-31.305,-17.075,-24.982)
O2': (-32.220,-17.271,-23.921)
N1: (-30.970,-19.417,-25.802)
O4: (-29.365,-22.980,-24.840)
O2: (-32.918,-20.573,-26.256)
C6: (-29.656,-19.488,-25.372)
C5: (-29.057,-20.638,-25.036)
O3': (-32.752,-15.155,-25.567)
Image (generated by PyMOL):