ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2VQE:A123:A122

Extra

PDB:
ATOM 1 O3' U A 122 108.110 61.903 -6.117 1.00 32.14 O
ATOM 2 P A A 123 106.578 61.597 -5.740 1.00 34.38 P
ATOM 3 OP1 A A 123 105.982 60.892 -6.942 1.00 33.34 O
ATOM 4 OP2 A A 123 105.975 62.864 -5.239 1.00 31.50 O
ATOM 5 O5' A A 123 106.696 60.562 -4.526 1.00 34.22 O
ATOM 6 C5' A A 123 106.975 59.157 -4.735 1.00 33.13 C
ATOM 7 C4' A A 123 107.647 58.578 -3.513 1.00 33.25 C
ATOM 8 O4' A A 123 109.026 59.007 -3.487 1.00 33.08 O
ATOM 9 C3' A A 123 107.053 59.051 -2.196 1.00 34.11 C
ATOM 10 O3' A A 123 105.989 58.221 -1.794 1.00 35.97 O
ATOM 11 C2' A A 123 108.235 58.995 -1.237 1.00 34.17 C
ATOM 12 O2' A A 123 108.440 57.739 -0.631 1.00 35.46 O
ATOM 13 C1' A A 123 109.407 59.327 -2.161 1.00 32.89 C
ATOM 14 N9 A A 123 109.767 60.745 -2.130 1.00 32.23 N
ATOM 15 C8 A A 123 109.599 61.667 -3.134 1.00 30.70 C
ATOM 16 N7 A A 123 110.018 62.865 -2.822 1.00 31.68 N
ATOM 17 C5 A A 123 110.493 62.729 -1.524 1.00 31.34 C
ATOM 18 C6 A A 123 111.067 63.650 -0.621 1.00 31.48 C
ATOM 19 N6 A A 123 111.271 64.940 -0.910 1.00 32.18 N
ATOM 20 N1 A A 123 111.426 63.195 0.599 1.00 29.92 N
ATOM 21 C2 A A 123 111.220 61.904 0.880 1.00 30.29 C
ATOM 22 N3 A A 123 110.691 60.944 0.119 1.00 30.33 N
ATOM 23 C4 A A 123 110.345 61.429 -1.085 1.00 31.47 C
ATOM 24 P C A 124 104.580 58.870 -1.372 1.00 36.65 P
ATOM 25 OP1 C A 124 103.678 57.692 -1.149 1.00 37.69 O
ATOM 26 OP2 C A 124 104.193 59.915 -2.344 1.00 36.45 O
ATOM 27 O5' C A 124 104.889 59.527 0.028 1.00 35.58 O
TER

ATOM 1 O3' C B 121 108.126 61.618 -12.373 1.00 33.89 O
ATOM 2 P U B 122 106.966 61.701 -11.254 1.00 34.18 P
ATOM 3 OP1 U B 122 106.614 60.280 -10.970 1.00 36.47 O
ATOM 4 OP2 U B 122 105.892 62.640 -11.691 1.00 33.18 O
ATOM 5 O5' U B 122 107.703 62.285 -9.973 1.00 30.58 O
ATOM 6 C5' U B 122 108.680 61.514 -9.298 1.00 29.16 C
ATOM 7 C4' U B 122 109.312 62.324 -8.208 1.00 30.63 C
ATOM 8 O4' U B 122 109.872 63.530 -8.784 1.00 31.62 O
ATOM 9 C3' U B 122 108.393 62.847 -7.115 1.00 31.14 C
ATOM 10 O3' U B 122 108.110 61.903 -6.117 1.00 32.14 O
ATOM 11 C2' U B 122 109.186 64.018 -6.556 1.00 30.44 C
ATOM 12 O2' U B 122 110.188 63.597 -5.657 1.00 29.07 O
ATOM 13 C1' U B 122 109.830 64.580 -7.822 1.00 29.89 C
ATOM 14 N1 U B 122 109.064 65.713 -8.367 1.00 27.78 N
ATOM 15 C2 U B 122 109.052 66.888 -7.629 1.00 27.37 C
ATOM 16 O2 U B 122 109.627 67.010 -6.563 1.00 27.96 O
ATOM 17 N3 U B 122 108.338 67.912 -8.183 1.00 26.02 N
ATOM 18 C4 U B 122 107.639 67.887 -9.365 1.00 27.56 C
ATOM 19 O4 U B 122 107.033 68.900 -9.724 1.00 31.23 O
ATOM 20 C5 U B 122 107.689 66.637 -10.070 1.00 24.92 C
ATOM 21 C6 U B 122 108.382 65.623 -9.562 1.00 26.16 C
ATOM 22 P A B 123 106.578 61.597 -5.740 1.00 34.38 P
ATOM 23 OP1 A B 123 105.982 60.892 -6.942 1.00 33.34 O
ATOM 24 OP2 A B 123 105.975 62.864 -5.239 1.00 31.50 O
ATOM 25 O5' A B 123 106.696 60.562 -4.526 1.00 34.22 O
TER

Atoms:
OP1: (105.982,60.892,-6.942)
OP2: (105.975,62.864,-5.239)
C3': (107.053,59.051,-2.196)
C1': (109.407,59.327,-2.161)
C5': (106.975,59.157,-4.735)
O4': (109.026,59.007,-3.487)
C8: (109.599,61.667,-3.134)
O2': (108.440,57.739,-0.631)
C6: (111.067,63.650,-0.621)
C5: (110.493,62.729,-1.524)
C4: (110.345,61.429,-1.085)
P: (106.578,61.597,-5.740)
C4': (107.647,58.578,-3.513)
C2': (108.235,58.995,-1.237)
C2: (111.220,61.904,0.880)
N1: (111.426,63.195,0.599)
N3: (110.691,60.944,0.119)
N6: (111.271,64.940,-0.910)
N7: (110.018,62.865,-2.822)
N9: (109.767,60.745,-2.130)
O5': (106.696,60.562,-4.526)
O3': (105.989,58.221,-1.794)
C4: (107.639,67.887,-9.365)
N3: (108.338,67.912,-8.183)
OP1: (106.614,60.280,-10.970)
OP2: (105.892,62.640,-11.691)
C2: (109.052,66.888,-7.629)
C1': (109.830,64.580,-7.822)
C3': (108.393,62.847,-7.115)
O5': (107.703,62.285,-9.973)
O4': (109.872,63.530,-8.784)
C5': (108.680,61.514,-9.298)
P: (106.966,61.701,-11.254)
C4': (109.312,62.324,-8.208)
C2': (109.186,64.018,-6.556)
O2': (110.188,63.597,-5.657)
N1: (109.064,65.713,-8.367)
O4: (107.033,68.900,-9.724)
O2: (109.627,67.010,-6.563)
C6: (108.382,65.623,-9.562)
C5: (107.689,66.637,-10.070)
O3': (108.110,61.903,-6.117)
Image (generated by PyMOL):
PyMOL image
show in jmol