Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5V:E61:E60
Extra
PDB:
ATOM 1 O3' U A 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 2 P A A 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 3 OP1 A A 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 4 OP2 A A 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 5 O5' A A 61 -10.952 17.420 117.983 1.00 83.96 O
ATOM 6 C5' A A 61 -11.471 18.724 117.723 1.00 82.22 C
ATOM 7 C4' A A 61 -11.858 18.850 116.265 1.00 87.72 C
ATOM 8 O4' A A 61 -10.689 18.581 115.447 1.00 85.68 O
ATOM 9 C3' A A 61 -12.919 17.870 115.780 1.00 87.04 C
ATOM 10 O3' A A 61 -14.218 18.434 115.949 1.00 89.69 O
ATOM 11 C2' A A 61 -12.581 17.731 114.300 1.00 84.87 C
ATOM 12 O2' A A 61 -13.070 18.811 113.530 1.00 87.24 O
ATOM 13 C1' A A 61 -11.053 17.785 114.332 1.00 82.82 C
ATOM 14 N9 A A 61 -10.424 16.474 114.495 1.00 78.94 N
ATOM 15 C8 A A 61 -9.585 16.077 115.504 1.00 78.67 C
ATOM 16 N7 A A 61 -9.181 14.835 115.400 1.00 77.78 N
ATOM 17 C5 A A 61 -9.793 14.384 114.241 1.00 76.06 C
ATOM 18 C6 A A 61 -9.769 13.143 113.584 1.00 76.15 C
ATOM 19 N6 A A 61 -9.079 12.086 114.020 1.00 73.18 N
ATOM 20 N1 A A 61 -10.488 13.022 112.449 1.00 77.42 N
ATOM 21 C2 A A 61 -11.184 14.082 112.015 1.00 79.80 C
ATOM 22 N3 A A 61 -11.288 15.299 112.547 1.00 79.13 N
ATOM 23 C4 A A 61 -10.560 15.384 113.671 1.00 77.13 C
ATOM 24 P C A 62 -15.450 17.502 116.398 1.00 87.57 P
ATOM 25 OP1 C A 62 -16.695 18.179 115.960 1.00 85.27 O
ATOM 26 OP2 C A 62 -15.266 17.162 117.831 1.00 85.55 O
ATOM 27 O5' C A 62 -15.282 16.173 115.536 1.00 82.05 O
TER
ATOM 1 O3' U B 59 -3.471 17.552 121.719 1.00 79.84 O
ATOM 2 P U B 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 3 OP1 U B 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 4 OP2 U B 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 5 O5' U B 60 -5.715 18.563 121.167 1.00 77.46 O
ATOM 6 C5' U B 60 -6.651 19.571 121.529 1.00 80.66 C
ATOM 7 C4' U B 60 -7.660 19.786 120.426 1.00 81.60 C
ATOM 8 O4' U B 60 -7.011 20.444 119.307 1.00 81.46 O
ATOM 9 C3' U B 60 -8.209 18.473 119.881 1.00 80.60 C
ATOM 10 O3' U B 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 11 C2' U B 60 -7.421 18.176 118.604 1.00 79.27 C
ATOM 12 O2' U B 60 -8.233 17.712 117.550 1.00 94.84 O
ATOM 13 C1' U B 60 -6.936 19.569 118.203 1.00 79.19 C
ATOM 14 N1 U B 60 -5.619 19.694 117.564 1.00 79.03 N
ATOM 15 C2 U B 60 -5.580 19.589 116.186 1.00 78.66 C
ATOM 16 O2 U B 60 -6.572 19.379 115.512 1.00 78.25 O
ATOM 17 N3 U B 60 -4.340 19.743 115.625 1.00 77.86 N
ATOM 18 C4 U B 60 -3.158 19.982 116.284 1.00 77.20 C
ATOM 19 O4 U B 60 -2.118 20.096 115.634 1.00 78.09 O
ATOM 20 C5 U B 60 -3.275 20.070 117.710 1.00 76.70 C
ATOM 21 C6 U B 60 -4.474 19.923 118.287 1.00 78.85 C
ATOM 22 P A B 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 23 OP1 A B 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 24 OP2 A B 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 25 O5' A B 61 -10.952 17.420 117.983 1.00 83.96 O
TER
ATOM 2 P A A 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 3 OP1 A A 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 4 OP2 A A 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 5 O5' A A 61 -10.952 17.420 117.983 1.00 83.96 O
ATOM 6 C5' A A 61 -11.471 18.724 117.723 1.00 82.22 C
ATOM 7 C4' A A 61 -11.858 18.850 116.265 1.00 87.72 C
ATOM 8 O4' A A 61 -10.689 18.581 115.447 1.00 85.68 O
ATOM 9 C3' A A 61 -12.919 17.870 115.780 1.00 87.04 C
ATOM 10 O3' A A 61 -14.218 18.434 115.949 1.00 89.69 O
ATOM 11 C2' A A 61 -12.581 17.731 114.300 1.00 84.87 C
ATOM 12 O2' A A 61 -13.070 18.811 113.530 1.00 87.24 O
ATOM 13 C1' A A 61 -11.053 17.785 114.332 1.00 82.82 C
ATOM 14 N9 A A 61 -10.424 16.474 114.495 1.00 78.94 N
ATOM 15 C8 A A 61 -9.585 16.077 115.504 1.00 78.67 C
ATOM 16 N7 A A 61 -9.181 14.835 115.400 1.00 77.78 N
ATOM 17 C5 A A 61 -9.793 14.384 114.241 1.00 76.06 C
ATOM 18 C6 A A 61 -9.769 13.143 113.584 1.00 76.15 C
ATOM 19 N6 A A 61 -9.079 12.086 114.020 1.00 73.18 N
ATOM 20 N1 A A 61 -10.488 13.022 112.449 1.00 77.42 N
ATOM 21 C2 A A 61 -11.184 14.082 112.015 1.00 79.80 C
ATOM 22 N3 A A 61 -11.288 15.299 112.547 1.00 79.13 N
ATOM 23 C4 A A 61 -10.560 15.384 113.671 1.00 77.13 C
ATOM 24 P C A 62 -15.450 17.502 116.398 1.00 87.57 P
ATOM 25 OP1 C A 62 -16.695 18.179 115.960 1.00 85.27 O
ATOM 26 OP2 C A 62 -15.266 17.162 117.831 1.00 85.55 O
ATOM 27 O5' C A 62 -15.282 16.173 115.536 1.00 82.05 O
TER
ATOM 1 O3' U B 59 -3.471 17.552 121.719 1.00 79.84 O
ATOM 2 P U B 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 3 OP1 U B 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 4 OP2 U B 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 5 O5' U B 60 -5.715 18.563 121.167 1.00 77.46 O
ATOM 6 C5' U B 60 -6.651 19.571 121.529 1.00 80.66 C
ATOM 7 C4' U B 60 -7.660 19.786 120.426 1.00 81.60 C
ATOM 8 O4' U B 60 -7.011 20.444 119.307 1.00 81.46 O
ATOM 9 C3' U B 60 -8.209 18.473 119.881 1.00 80.60 C
ATOM 10 O3' U B 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 11 C2' U B 60 -7.421 18.176 118.604 1.00 79.27 C
ATOM 12 O2' U B 60 -8.233 17.712 117.550 1.00 94.84 O
ATOM 13 C1' U B 60 -6.936 19.569 118.203 1.00 79.19 C
ATOM 14 N1 U B 60 -5.619 19.694 117.564 1.00 79.03 N
ATOM 15 C2 U B 60 -5.580 19.589 116.186 1.00 78.66 C
ATOM 16 O2 U B 60 -6.572 19.379 115.512 1.00 78.25 O
ATOM 17 N3 U B 60 -4.340 19.743 115.625 1.00 77.86 N
ATOM 18 C4 U B 60 -3.158 19.982 116.284 1.00 77.20 C
ATOM 19 O4 U B 60 -2.118 20.096 115.634 1.00 78.09 O
ATOM 20 C5 U B 60 -3.275 20.070 117.710 1.00 76.70 C
ATOM 21 C6 U B 60 -4.474 19.923 118.287 1.00 78.85 C
ATOM 22 P A B 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 23 OP1 A B 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 24 OP2 A B 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 25 O5' A B 61 -10.952 17.420 117.983 1.00 83.96 O
TER
Atoms:
OP1: (-11.535,16.791,120.316)
OP2: (-9.357,15.973,119.242)
C3': (-12.919,17.870,115.780)
C1': (-11.053,17.785,114.332)
C5': (-11.471,18.724,117.723)
O4': (-10.689,18.581,115.447)
C8: (-9.585,16.077,115.504)
O2': (-13.070,18.811,113.530)
C6: (-9.769,13.143,113.584)
C5: (-9.793,14.384,114.241)
C4: (-10.560,15.384,113.671)
P: (-10.379,17.033,119.419)
C4': (-11.858,18.850,116.265)
C2': (-12.581,17.731,114.300)
C2: (-11.184,14.082,112.015)
N1: (-10.488,13.022,112.449)
N3: (-11.288,15.299,112.547)
N6: (-9.079,12.086,114.020)
N7: (-9.181,14.835,115.400)
N9: (-10.424,16.474,114.495)
O5': (-10.952,17.420,117.983)
O3': (-14.218,18.434,115.949)
OP2: (-9.357,15.973,119.242)
C3': (-12.919,17.870,115.780)
C1': (-11.053,17.785,114.332)
C5': (-11.471,18.724,117.723)
O4': (-10.689,18.581,115.447)
C8: (-9.585,16.077,115.504)
O2': (-13.070,18.811,113.530)
C6: (-9.769,13.143,113.584)
C5: (-9.793,14.384,114.241)
C4: (-10.560,15.384,113.671)
P: (-10.379,17.033,119.419)
C4': (-11.858,18.850,116.265)
C2': (-12.581,17.731,114.300)
C2: (-11.184,14.082,112.015)
N1: (-10.488,13.022,112.449)
N3: (-11.288,15.299,112.547)
N6: (-9.079,12.086,114.020)
N7: (-9.181,14.835,115.400)
N9: (-10.424,16.474,114.495)
O5': (-10.952,17.420,117.983)
O3': (-14.218,18.434,115.949)
C4: (-3.158,19.982,116.284)
N3: (-4.340,19.743,115.625)
OP1: (-4.883,18.550,123.510)
OP2: (-5.614,16.378,122.368)
C2: (-5.580,19.589,116.186)
C1': (-6.936,19.569,118.203)
C3': (-8.209,18.473,119.881)
O5': (-5.715,18.563,121.167)
O4': (-7.011,20.444,119.307)
C5': (-6.651,19.571,121.529)
P: (-4.970,17.713,122.291)
C4': (-7.660,19.786,120.426)
C2': (-7.421,18.176,118.604)
O2': (-8.233,17.712,117.550)
N1: (-5.619,19.694,117.564)
O4: (-2.118,20.096,115.634)
O2: (-6.572,19.379,115.512)
C6: (-4.474,19.923,118.287)
C5: (-3.275,20.070,117.710)
O3': (-9.639,18.374,119.915)
N3: (-4.340,19.743,115.625)
OP1: (-4.883,18.550,123.510)
OP2: (-5.614,16.378,122.368)
C2: (-5.580,19.589,116.186)
C1': (-6.936,19.569,118.203)
C3': (-8.209,18.473,119.881)
O5': (-5.715,18.563,121.167)
O4': (-7.011,20.444,119.307)
C5': (-6.651,19.571,121.529)
P: (-4.970,17.713,122.291)
C4': (-7.660,19.786,120.426)
C2': (-7.421,18.176,118.604)
O2': (-8.233,17.712,117.550)
N1: (-5.619,19.694,117.564)
O4: (-2.118,20.096,115.634)
O2: (-6.572,19.379,115.512)
C6: (-4.474,19.923,118.287)
C5: (-3.275,20.070,117.710)
O3': (-9.639,18.374,119.915)
Image (generated by PyMOL):