Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11019:11018
Extra
PDB:
ATOM 1 O3' U A1018 56.956 -85.785 55.321 1.00 67.67 O
ATOM 2 P A A1019 55.930 -86.998 55.080 1.00 69.70 P
ATOM 3 OP1 A A1019 55.878 -87.783 56.351 1.00 69.99 O
ATOM 4 OP2 A A1019 56.353 -87.673 53.821 1.00 70.18 O
ATOM 5 O5' A A1019 54.541 -86.256 54.848 1.00 69.24 O
ATOM 6 C5' A A1019 53.316 -86.886 55.162 1.00 69.44 C
ATOM 7 C4' A A1019 52.479 -86.040 56.079 1.00 68.89 C
ATOM 8 O4' A A1019 53.172 -85.859 57.332 1.00 68.75 O
ATOM 9 C3' A A1019 52.150 -84.632 55.576 1.00 68.22 C
ATOM 10 O3' A A1019 50.899 -84.260 56.111 1.00 67.92 O
ATOM 11 C2' A A1019 53.204 -83.788 56.266 1.00 67.83 C
ATOM 12 O2' A A1019 52.881 -82.414 56.393 1.00 67.15 O
ATOM 13 C1' A A1019 53.240 -84.477 57.616 1.00 68.07 C
ATOM 14 N9 A A1019 54.437 -84.207 58.400 1.00 67.97 N
ATOM 15 C8 A A1019 55.756 -84.238 58.056 1.00 68.11 C
ATOM 16 N7 A A1019 56.525 -83.912 59.064 1.00 67.96 N
ATOM 17 C5 A A1019 55.640 -83.662 60.110 1.00 67.71 C
ATOM 18 C6 A A1019 55.809 -83.271 61.458 1.00 67.48 C
ATOM 19 N6 A A1019 57.010 -83.062 62.016 1.00 67.46 N
ATOM 20 N1 A A1019 54.705 -83.097 62.221 1.00 67.28 N
ATOM 21 C2 A A1019 53.518 -83.320 61.647 1.00 67.31 C
ATOM 22 N3 A A1019 53.236 -83.689 60.400 1.00 67.52 N
ATOM 23 C4 A A1019 54.355 -83.835 59.694 1.00 67.71 C
ATOM 24 P C A1020 49.547 -84.701 55.408 1.00 58.11 P
ATOM 25 OP1 C A1020 48.480 -84.702 56.477 1.00 57.97 O
ATOM 26 OP2 C A1020 49.821 -85.952 54.648 1.00 58.80 O
ATOM 27 O5' C A1020 49.323 -83.491 54.400 1.00 57.60 O
TER
ATOM 1 O3' U B1017 62.674 -85.746 52.924 1.00 74.73 O
ATOM 2 P U B1018 61.348 -86.524 53.369 1.00 68.61 P
ATOM 3 OP1 U B1018 61.620 -87.067 54.723 1.00 68.80 O
ATOM 4 OP2 U B1018 60.982 -87.464 52.273 1.00 69.15 O
ATOM 5 O5' U B1018 60.257 -85.368 53.467 1.00 67.92 O
ATOM 6 C5' U B1018 59.927 -84.778 54.706 1.00 67.50 C
ATOM 7 C4' U B1018 58.579 -84.135 54.641 1.00 67.06 C
ATOM 8 O4' U B1018 58.580 -83.098 53.629 1.00 66.65 O
ATOM 9 C3' U B1018 57.455 -85.049 54.231 1.00 67.44 C
ATOM 10 O3' U B1018 56.956 -85.785 55.321 1.00 67.67 O
ATOM 11 C2' U B1018 56.439 -84.089 53.634 1.00 66.94 C
ATOM 12 O2' U B1018 55.735 -83.435 54.660 1.00 66.48 O
ATOM 13 C1' U B1018 57.337 -83.062 52.969 1.00 66.58 C
ATOM 14 N1 U B1018 57.562 -83.343 51.536 1.00 66.88 N
ATOM 15 C2 U B1018 56.888 -82.581 50.593 1.00 66.56 C
ATOM 16 O2 U B1018 56.081 -81.711 50.894 1.00 66.05 O
ATOM 17 N3 U B1018 57.206 -82.880 49.289 1.00 66.87 N
ATOM 18 C4 U B1018 58.099 -83.846 48.869 1.00 67.46 C
ATOM 19 O4 U B1018 58.317 -84.039 47.680 1.00 67.72 O
ATOM 20 C5 U B1018 58.742 -84.569 49.903 1.00 67.75 C
ATOM 21 C6 U B1018 58.474 -84.292 51.165 1.00 67.45 C
ATOM 22 P A B1019 55.930 -86.998 55.080 1.00 69.70 P
ATOM 23 OP1 A B1019 55.878 -87.783 56.351 1.00 69.99 O
ATOM 24 OP2 A B1019 56.353 -87.673 53.821 1.00 70.18 O
ATOM 25 O5' A B1019 54.541 -86.256 54.848 1.00 69.24 O
TER
ATOM 2 P A A1019 55.930 -86.998 55.080 1.00 69.70 P
ATOM 3 OP1 A A1019 55.878 -87.783 56.351 1.00 69.99 O
ATOM 4 OP2 A A1019 56.353 -87.673 53.821 1.00 70.18 O
ATOM 5 O5' A A1019 54.541 -86.256 54.848 1.00 69.24 O
ATOM 6 C5' A A1019 53.316 -86.886 55.162 1.00 69.44 C
ATOM 7 C4' A A1019 52.479 -86.040 56.079 1.00 68.89 C
ATOM 8 O4' A A1019 53.172 -85.859 57.332 1.00 68.75 O
ATOM 9 C3' A A1019 52.150 -84.632 55.576 1.00 68.22 C
ATOM 10 O3' A A1019 50.899 -84.260 56.111 1.00 67.92 O
ATOM 11 C2' A A1019 53.204 -83.788 56.266 1.00 67.83 C
ATOM 12 O2' A A1019 52.881 -82.414 56.393 1.00 67.15 O
ATOM 13 C1' A A1019 53.240 -84.477 57.616 1.00 68.07 C
ATOM 14 N9 A A1019 54.437 -84.207 58.400 1.00 67.97 N
ATOM 15 C8 A A1019 55.756 -84.238 58.056 1.00 68.11 C
ATOM 16 N7 A A1019 56.525 -83.912 59.064 1.00 67.96 N
ATOM 17 C5 A A1019 55.640 -83.662 60.110 1.00 67.71 C
ATOM 18 C6 A A1019 55.809 -83.271 61.458 1.00 67.48 C
ATOM 19 N6 A A1019 57.010 -83.062 62.016 1.00 67.46 N
ATOM 20 N1 A A1019 54.705 -83.097 62.221 1.00 67.28 N
ATOM 21 C2 A A1019 53.518 -83.320 61.647 1.00 67.31 C
ATOM 22 N3 A A1019 53.236 -83.689 60.400 1.00 67.52 N
ATOM 23 C4 A A1019 54.355 -83.835 59.694 1.00 67.71 C
ATOM 24 P C A1020 49.547 -84.701 55.408 1.00 58.11 P
ATOM 25 OP1 C A1020 48.480 -84.702 56.477 1.00 57.97 O
ATOM 26 OP2 C A1020 49.821 -85.952 54.648 1.00 58.80 O
ATOM 27 O5' C A1020 49.323 -83.491 54.400 1.00 57.60 O
TER
ATOM 1 O3' U B1017 62.674 -85.746 52.924 1.00 74.73 O
ATOM 2 P U B1018 61.348 -86.524 53.369 1.00 68.61 P
ATOM 3 OP1 U B1018 61.620 -87.067 54.723 1.00 68.80 O
ATOM 4 OP2 U B1018 60.982 -87.464 52.273 1.00 69.15 O
ATOM 5 O5' U B1018 60.257 -85.368 53.467 1.00 67.92 O
ATOM 6 C5' U B1018 59.927 -84.778 54.706 1.00 67.50 C
ATOM 7 C4' U B1018 58.579 -84.135 54.641 1.00 67.06 C
ATOM 8 O4' U B1018 58.580 -83.098 53.629 1.00 66.65 O
ATOM 9 C3' U B1018 57.455 -85.049 54.231 1.00 67.44 C
ATOM 10 O3' U B1018 56.956 -85.785 55.321 1.00 67.67 O
ATOM 11 C2' U B1018 56.439 -84.089 53.634 1.00 66.94 C
ATOM 12 O2' U B1018 55.735 -83.435 54.660 1.00 66.48 O
ATOM 13 C1' U B1018 57.337 -83.062 52.969 1.00 66.58 C
ATOM 14 N1 U B1018 57.562 -83.343 51.536 1.00 66.88 N
ATOM 15 C2 U B1018 56.888 -82.581 50.593 1.00 66.56 C
ATOM 16 O2 U B1018 56.081 -81.711 50.894 1.00 66.05 O
ATOM 17 N3 U B1018 57.206 -82.880 49.289 1.00 66.87 N
ATOM 18 C4 U B1018 58.099 -83.846 48.869 1.00 67.46 C
ATOM 19 O4 U B1018 58.317 -84.039 47.680 1.00 67.72 O
ATOM 20 C5 U B1018 58.742 -84.569 49.903 1.00 67.75 C
ATOM 21 C6 U B1018 58.474 -84.292 51.165 1.00 67.45 C
ATOM 22 P A B1019 55.930 -86.998 55.080 1.00 69.70 P
ATOM 23 OP1 A B1019 55.878 -87.783 56.351 1.00 69.99 O
ATOM 24 OP2 A B1019 56.353 -87.673 53.821 1.00 70.18 O
ATOM 25 O5' A B1019 54.541 -86.256 54.848 1.00 69.24 O
TER
Atoms:
OP1: (55.878,-87.783,56.351)
OP2: (56.353,-87.673,53.821)
C3': (52.150,-84.632,55.576)
C1': (53.240,-84.477,57.616)
C5': (53.316,-86.886,55.162)
O4': (53.172,-85.859,57.332)
C8: (55.756,-84.238,58.056)
O2': (52.881,-82.414,56.393)
C6: (55.809,-83.271,61.458)
C5: (55.640,-83.662,60.110)
C4: (54.355,-83.835,59.694)
P: (55.930,-86.998,55.080)
C4': (52.479,-86.040,56.079)
C2': (53.204,-83.788,56.266)
C2: (53.518,-83.320,61.647)
N1: (54.705,-83.097,62.221)
N3: (53.236,-83.689,60.400)
N6: (57.010,-83.062,62.016)
N7: (56.525,-83.912,59.064)
N9: (54.437,-84.207,58.400)
O5': (54.541,-86.256,54.848)
O3': (50.899,-84.260,56.111)
OP2: (56.353,-87.673,53.821)
C3': (52.150,-84.632,55.576)
C1': (53.240,-84.477,57.616)
C5': (53.316,-86.886,55.162)
O4': (53.172,-85.859,57.332)
C8: (55.756,-84.238,58.056)
O2': (52.881,-82.414,56.393)
C6: (55.809,-83.271,61.458)
C5: (55.640,-83.662,60.110)
C4: (54.355,-83.835,59.694)
P: (55.930,-86.998,55.080)
C4': (52.479,-86.040,56.079)
C2': (53.204,-83.788,56.266)
C2: (53.518,-83.320,61.647)
N1: (54.705,-83.097,62.221)
N3: (53.236,-83.689,60.400)
N6: (57.010,-83.062,62.016)
N7: (56.525,-83.912,59.064)
N9: (54.437,-84.207,58.400)
O5': (54.541,-86.256,54.848)
O3': (50.899,-84.260,56.111)
C4: (58.099,-83.846,48.869)
N3: (57.206,-82.880,49.289)
OP1: (61.620,-87.067,54.723)
OP2: (60.982,-87.464,52.273)
C2: (56.888,-82.581,50.593)
C1': (57.337,-83.062,52.969)
C3': (57.455,-85.049,54.231)
O5': (60.257,-85.368,53.467)
O4': (58.580,-83.098,53.629)
C5': (59.927,-84.778,54.706)
P: (61.348,-86.524,53.369)
C4': (58.579,-84.135,54.641)
C2': (56.439,-84.089,53.634)
O2': (55.735,-83.435,54.660)
N1: (57.562,-83.343,51.536)
O4: (58.317,-84.039,47.680)
O2: (56.081,-81.711,50.894)
C6: (58.474,-84.292,51.165)
C5: (58.742,-84.569,49.903)
O3': (56.956,-85.785,55.321)
N3: (57.206,-82.880,49.289)
OP1: (61.620,-87.067,54.723)
OP2: (60.982,-87.464,52.273)
C2: (56.888,-82.581,50.593)
C1': (57.337,-83.062,52.969)
C3': (57.455,-85.049,54.231)
O5': (60.257,-85.368,53.467)
O4': (58.580,-83.098,53.629)
C5': (59.927,-84.778,54.706)
P: (61.348,-86.524,53.369)
C4': (58.579,-84.135,54.641)
C2': (56.439,-84.089,53.634)
O2': (55.735,-83.435,54.660)
N1: (57.562,-83.343,51.536)
O4: (58.317,-84.039,47.680)
O2: (56.081,-81.711,50.894)
C6: (58.474,-84.292,51.165)
C5: (58.742,-84.569,49.903)
O3': (56.956,-85.785,55.321)
Image (generated by PyMOL):