ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1XMQ:A123:A122

Extra

PDB:
ATOM 1 O3' U A 122 107.493 61.668 -6.272 1.00 43.92 O
ATOM 2 P A A 123 106.023 61.556 -5.636 1.00 63.32 P
ATOM 3 OP1 A A 123 105.128 61.018 -6.690 1.00 37.56 O
ATOM 4 OP2 A A 123 105.675 62.835 -4.962 1.00 37.56 O
ATOM 5 O5' A A 123 106.204 60.461 -4.498 1.00 63.32 O
ATOM 6 C5' A A 123 106.385 59.066 -4.810 1.00 63.32 C
ATOM 7 C4' A A 123 107.067 58.372 -3.659 1.00 63.32 C
ATOM 8 O4' A A 123 108.467 58.726 -3.662 1.00 63.32 O
ATOM 9 C3' A A 123 106.541 58.797 -2.297 1.00 63.32 C
ATOM 10 O3' A A 123 105.433 57.995 -1.915 1.00 63.32 O
ATOM 11 C2' A A 123 107.753 58.616 -1.394 1.00 63.32 C
ATOM 12 O2' A A 123 107.930 57.290 -0.944 1.00 63.32 O
ATOM 13 C1' A A 123 108.901 58.972 -2.340 1.00 63.32 C
ATOM 14 N9 A A 123 109.296 60.379 -2.258 1.00 37.56 N
ATOM 15 C8 A A 123 109.153 61.333 -3.233 1.00 37.56 C
ATOM 16 N7 A A 123 109.583 62.511 -2.878 1.00 37.56 N
ATOM 17 C5 A A 123 110.043 62.328 -1.582 1.00 37.56 C
ATOM 18 C6 A A 123 110.614 63.206 -0.655 1.00 37.56 C
ATOM 19 N6 A A 123 110.827 64.495 -0.897 1.00 37.56 N
ATOM 20 N1 A A 123 110.962 62.710 0.548 1.00 37.56 N
ATOM 21 C2 A A 123 110.743 61.416 0.788 1.00 37.56 C
ATOM 22 N3 A A 123 110.213 60.490 -0.004 1.00 37.56 N
ATOM 23 C4 A A 123 109.879 61.020 -1.189 1.00 37.56 C
ATOM 24 P C A 124 104.128 58.678 -1.273 1.00 49.81 P
ATOM 25 OP1 C A 124 103.233 57.544 -0.922 1.00 54.20 O
ATOM 26 OP2 C A 124 103.620 59.755 -2.155 1.00 54.20 O
ATOM 27 O5' C A 124 104.677 59.318 0.073 1.00 49.81 O
TER

ATOM 1 O3' C B 121 107.664 61.507 -12.402 1.00 56.85 O
ATOM 2 P U B 122 106.407 61.598 -11.401 1.00 43.92 P
ATOM 3 OP1 U B 122 105.972 60.194 -11.168 1.00 50.38 O
ATOM 4 OP2 U B 122 105.420 62.598 -11.893 1.00 50.38 O
ATOM 5 O5' U B 122 107.061 62.123 -10.049 1.00 43.92 O
ATOM 6 C5' U B 122 108.119 61.387 -9.434 1.00 43.92 C
ATOM 7 C4' U B 122 108.720 62.177 -8.308 1.00 43.92 C
ATOM 8 O4' U B 122 109.326 63.387 -8.826 1.00 43.92 O
ATOM 9 C3' U B 122 107.766 62.675 -7.234 1.00 43.92 C
ATOM 10 O3' U B 122 107.493 61.668 -6.272 1.00 43.92 O
ATOM 11 C2' U B 122 108.543 63.836 -6.626 1.00 43.92 C
ATOM 12 O2' U B 122 109.547 63.394 -5.738 1.00 43.92 O
ATOM 13 C1' U B 122 109.243 64.419 -7.851 1.00 43.92 C
ATOM 14 N1 U B 122 108.514 65.557 -8.426 1.00 50.38 N
ATOM 15 C2 U B 122 108.476 66.748 -7.708 1.00 50.38 C
ATOM 16 O2 U B 122 109.041 66.915 -6.642 1.00 50.38 O
ATOM 17 N3 U B 122 107.751 67.745 -8.293 1.00 50.38 N
ATOM 18 C4 U B 122 107.088 67.690 -9.497 1.00 50.38 C
ATOM 19 O4 U B 122 106.482 68.680 -9.890 1.00 50.38 O
ATOM 20 C5 U B 122 107.188 66.444 -10.184 1.00 50.38 C
ATOM 21 C6 U B 122 107.876 65.446 -9.639 1.00 50.38 C
ATOM 22 P A B 123 106.023 61.556 -5.636 1.00 63.32 P
ATOM 23 OP1 A B 123 105.128 61.018 -6.690 1.00 37.56 O
ATOM 24 OP2 A B 123 105.675 62.835 -4.962 1.00 37.56 O
ATOM 25 O5' A B 123 106.204 60.461 -4.498 1.00 63.32 O
TER

Atoms:
OP1: (105.128,61.018,-6.690)
OP2: (105.675,62.835,-4.962)
C3': (106.541,58.797,-2.297)
C1': (108.901,58.972,-2.340)
C5': (106.385,59.066,-4.810)
O4': (108.467,58.726,-3.662)
C8: (109.153,61.333,-3.233)
O2': (107.930,57.290,-0.944)
C6: (110.614,63.206,-0.655)
C5: (110.043,62.328,-1.582)
C4: (109.879,61.020,-1.189)
P: (106.023,61.556,-5.636)
C4': (107.067,58.372,-3.659)
C2': (107.753,58.616,-1.394)
C2: (110.743,61.416,0.788)
N1: (110.962,62.710,0.548)
N3: (110.213,60.490,-0.004)
N6: (110.827,64.495,-0.897)
N7: (109.583,62.511,-2.878)
N9: (109.296,60.379,-2.258)
O5': (106.204,60.461,-4.498)
O3': (105.433,57.995,-1.915)
C4: (107.088,67.690,-9.497)
N3: (107.751,67.745,-8.293)
OP1: (105.972,60.194,-11.168)
OP2: (105.420,62.598,-11.893)
C2: (108.476,66.748,-7.708)
C1': (109.243,64.419,-7.851)
C3': (107.766,62.675,-7.234)
O5': (107.061,62.123,-10.049)
O4': (109.326,63.387,-8.826)
C5': (108.119,61.387,-9.434)
P: (106.407,61.598,-11.401)
C4': (108.720,62.177,-8.308)
C2': (108.543,63.836,-6.626)
O2': (109.547,63.394,-5.738)
N1: (108.514,65.557,-8.426)
O4: (106.482,68.680,-9.890)
O2: (109.041,66.915,-6.642)
C6: (107.876,65.446,-9.639)
C5: (107.188,66.444,-10.184)
O3': (107.493,61.668,-6.272)
Image (generated by PyMOL):
PyMOL image
show in jmol