Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1880:1750
Extra
PDB:
ATOM 1 O3' U A 879 46.218 -19.255 82.116 1.00 35.04 O
ATOM 2 P A A 880 47.319 -18.867 81.023 1.00 42.00 P
ATOM 3 OP1 A A 880 47.935 -20.108 80.579 1.00 42.06 O
ATOM 4 OP2 A A 880 48.177 -17.819 81.588 1.00 42.03 O
ATOM 5 O5' A A 880 46.465 -18.257 79.864 1.00 41.83 O
ATOM 6 C5' A A 880 45.257 -18.853 79.465 1.00 41.79 C
ATOM 7 C4' A A 880 44.427 -17.883 78.692 1.00 41.65 C
ATOM 8 O4' A A 880 44.011 -16.818 79.542 1.00 41.66 O
ATOM 9 C3' A A 880 45.139 -17.213 77.562 1.00 41.54 C
ATOM 10 O3' A A 880 44.984 -17.970 76.400 1.00 41.50 O
ATOM 11 C2' A A 880 44.454 -15.858 77.453 1.00 41.46 C
ATOM 12 O2' A A 880 43.443 -15.935 76.479 1.00 41.37 O
ATOM 13 C1' A A 880 43.778 -15.693 78.797 1.00 41.54 C
ATOM 14 N9 A A 880 44.241 -14.541 79.548 1.00 41.58 N
ATOM 15 C8 A A 880 45.279 -14.408 80.448 1.00 41.68 C
ATOM 16 N7 A A 880 45.347 -13.215 81.005 1.00 41.70 N
ATOM 17 C5 A A 880 44.251 -12.559 80.436 1.00 41.61 C
ATOM 18 C6 A A 880 43.747 -11.273 80.573 1.00 41.59 C
ATOM 19 N6 A A 880 44.297 -10.386 81.339 1.00 41.67 N
ATOM 20 N1 A A 880 42.650 -10.919 79.906 1.00 41.51 N
ATOM 21 C2 A A 880 42.082 -11.838 79.103 1.00 41.44 C
ATOM 22 N3 A A 880 42.449 -13.096 78.873 1.00 41.45 N
ATOM 23 C4 A A 880 43.559 -13.376 79.565 1.00 41.53 C
ATOM 24 P G A 881 46.217 -18.436 75.511 1.00 36.21 P
ATOM 25 OP1 G A 881 46.612 -19.748 75.996 1.00 36.33 O
ATOM 26 OP2 G A 881 47.207 -17.374 75.494 1.00 36.17 O
ATOM 27 O5' G A 881 45.535 -18.559 74.072 1.00 36.11 O
TER
ATOM 1 O3' G B 749 45.488 -6.442 83.078 1.00 34.14 O
ATOM 2 P A B 750 45.493 -7.034 84.557 1.00 37.82 P
ATOM 3 OP1 A B 750 45.744 -5.928 85.494 1.00 37.97 O
ATOM 4 OP2 A B 750 46.419 -8.126 84.523 1.00 37.83 O
ATOM 5 O5' A B 750 44.018 -7.561 84.786 1.00 37.81 O
ATOM 6 C5' A B 750 43.384 -8.393 83.861 1.00 37.67 C
ATOM 7 C4' A B 750 42.245 -7.693 83.187 1.00 37.59 C
ATOM 8 O4' A B 750 41.960 -8.375 81.962 1.00 37.45 O
ATOM 9 C3' A B 750 40.934 -7.626 83.961 1.00 37.67 C
ATOM 10 O3' A B 750 40.763 -6.358 84.580 1.00 37.76 O
ATOM 11 C2' A B 750 39.881 -7.903 82.901 1.00 37.54 C
ATOM 12 O2' A B 750 39.521 -6.702 82.259 1.00 37.49 O
ATOM 13 C1' A B 750 40.632 -8.721 81.890 1.00 37.43 C
ATOM 14 N9 A B 750 40.562 -10.151 82.096 1.00 37.45 N
ATOM 15 C8 A B 750 41.310 -10.914 82.924 1.00 37.54 C
ATOM 16 N7 A B 750 41.109 -12.191 82.774 1.00 37.54 N
ATOM 17 C5 A B 750 40.225 -12.221 81.707 1.00 37.43 C
ATOM 18 C6 A B 750 39.650 -13.271 81.036 1.00 37.38 C
ATOM 19 N6 A B 750 39.898 -14.505 81.403 1.00 37.45 N
ATOM 20 N1 A B 750 38.796 -13.009 80.039 1.00 37.29 N
ATOM 21 C2 A B 750 38.568 -11.724 79.754 1.00 37.24 C
ATOM 22 N3 A B 750 39.057 -10.631 80.287 1.00 37.27 N
ATOM 23 C4 A B 750 39.884 -10.975 81.271 1.00 37.37 C
ATOM 24 P A B 751 39.601 -6.086 85.694 1.00 38.04 P
ATOM 25 OP1 A B 751 39.463 -4.633 85.854 1.00 38.10 O
ATOM 26 OP2 A B 751 39.924 -6.857 86.858 1.00 38.17 O
ATOM 27 O5' A B 751 38.294 -6.678 85.029 1.00 37.94 O
TER
ATOM 2 P A A 880 47.319 -18.867 81.023 1.00 42.00 P
ATOM 3 OP1 A A 880 47.935 -20.108 80.579 1.00 42.06 O
ATOM 4 OP2 A A 880 48.177 -17.819 81.588 1.00 42.03 O
ATOM 5 O5' A A 880 46.465 -18.257 79.864 1.00 41.83 O
ATOM 6 C5' A A 880 45.257 -18.853 79.465 1.00 41.79 C
ATOM 7 C4' A A 880 44.427 -17.883 78.692 1.00 41.65 C
ATOM 8 O4' A A 880 44.011 -16.818 79.542 1.00 41.66 O
ATOM 9 C3' A A 880 45.139 -17.213 77.562 1.00 41.54 C
ATOM 10 O3' A A 880 44.984 -17.970 76.400 1.00 41.50 O
ATOM 11 C2' A A 880 44.454 -15.858 77.453 1.00 41.46 C
ATOM 12 O2' A A 880 43.443 -15.935 76.479 1.00 41.37 O
ATOM 13 C1' A A 880 43.778 -15.693 78.797 1.00 41.54 C
ATOM 14 N9 A A 880 44.241 -14.541 79.548 1.00 41.58 N
ATOM 15 C8 A A 880 45.279 -14.408 80.448 1.00 41.68 C
ATOM 16 N7 A A 880 45.347 -13.215 81.005 1.00 41.70 N
ATOM 17 C5 A A 880 44.251 -12.559 80.436 1.00 41.61 C
ATOM 18 C6 A A 880 43.747 -11.273 80.573 1.00 41.59 C
ATOM 19 N6 A A 880 44.297 -10.386 81.339 1.00 41.67 N
ATOM 20 N1 A A 880 42.650 -10.919 79.906 1.00 41.51 N
ATOM 21 C2 A A 880 42.082 -11.838 79.103 1.00 41.44 C
ATOM 22 N3 A A 880 42.449 -13.096 78.873 1.00 41.45 N
ATOM 23 C4 A A 880 43.559 -13.376 79.565 1.00 41.53 C
ATOM 24 P G A 881 46.217 -18.436 75.511 1.00 36.21 P
ATOM 25 OP1 G A 881 46.612 -19.748 75.996 1.00 36.33 O
ATOM 26 OP2 G A 881 47.207 -17.374 75.494 1.00 36.17 O
ATOM 27 O5' G A 881 45.535 -18.559 74.072 1.00 36.11 O
TER
ATOM 1 O3' G B 749 45.488 -6.442 83.078 1.00 34.14 O
ATOM 2 P A B 750 45.493 -7.034 84.557 1.00 37.82 P
ATOM 3 OP1 A B 750 45.744 -5.928 85.494 1.00 37.97 O
ATOM 4 OP2 A B 750 46.419 -8.126 84.523 1.00 37.83 O
ATOM 5 O5' A B 750 44.018 -7.561 84.786 1.00 37.81 O
ATOM 6 C5' A B 750 43.384 -8.393 83.861 1.00 37.67 C
ATOM 7 C4' A B 750 42.245 -7.693 83.187 1.00 37.59 C
ATOM 8 O4' A B 750 41.960 -8.375 81.962 1.00 37.45 O
ATOM 9 C3' A B 750 40.934 -7.626 83.961 1.00 37.67 C
ATOM 10 O3' A B 750 40.763 -6.358 84.580 1.00 37.76 O
ATOM 11 C2' A B 750 39.881 -7.903 82.901 1.00 37.54 C
ATOM 12 O2' A B 750 39.521 -6.702 82.259 1.00 37.49 O
ATOM 13 C1' A B 750 40.632 -8.721 81.890 1.00 37.43 C
ATOM 14 N9 A B 750 40.562 -10.151 82.096 1.00 37.45 N
ATOM 15 C8 A B 750 41.310 -10.914 82.924 1.00 37.54 C
ATOM 16 N7 A B 750 41.109 -12.191 82.774 1.00 37.54 N
ATOM 17 C5 A B 750 40.225 -12.221 81.707 1.00 37.43 C
ATOM 18 C6 A B 750 39.650 -13.271 81.036 1.00 37.38 C
ATOM 19 N6 A B 750 39.898 -14.505 81.403 1.00 37.45 N
ATOM 20 N1 A B 750 38.796 -13.009 80.039 1.00 37.29 N
ATOM 21 C2 A B 750 38.568 -11.724 79.754 1.00 37.24 C
ATOM 22 N3 A B 750 39.057 -10.631 80.287 1.00 37.27 N
ATOM 23 C4 A B 750 39.884 -10.975 81.271 1.00 37.37 C
ATOM 24 P A B 751 39.601 -6.086 85.694 1.00 38.04 P
ATOM 25 OP1 A B 751 39.463 -4.633 85.854 1.00 38.10 O
ATOM 26 OP2 A B 751 39.924 -6.857 86.858 1.00 38.17 O
ATOM 27 O5' A B 751 38.294 -6.678 85.029 1.00 37.94 O
TER
Atoms:
OP1: (47.935,-20.108,80.579)
OP2: (48.177,-17.819,81.588)
C3': (45.139,-17.213,77.562)
C1': (43.778,-15.693,78.797)
C5': (45.257,-18.853,79.465)
O4': (44.011,-16.818,79.542)
C8: (45.279,-14.408,80.448)
O2': (43.443,-15.935,76.479)
C6: (43.747,-11.273,80.573)
C5: (44.251,-12.559,80.436)
C4: (43.559,-13.376,79.565)
P: (47.319,-18.867,81.023)
C4': (44.427,-17.883,78.692)
C2': (44.454,-15.858,77.453)
C2: (42.082,-11.838,79.103)
N1: (42.650,-10.919,79.906)
N3: (42.449,-13.096,78.873)
N6: (44.297,-10.386,81.339)
N7: (45.347,-13.215,81.005)
N9: (44.241,-14.541,79.548)
O5': (46.465,-18.257,79.864)
O3': (44.984,-17.970,76.400)
OP2: (48.177,-17.819,81.588)
C3': (45.139,-17.213,77.562)
C1': (43.778,-15.693,78.797)
C5': (45.257,-18.853,79.465)
O4': (44.011,-16.818,79.542)
C8: (45.279,-14.408,80.448)
O2': (43.443,-15.935,76.479)
C6: (43.747,-11.273,80.573)
C5: (44.251,-12.559,80.436)
C4: (43.559,-13.376,79.565)
P: (47.319,-18.867,81.023)
C4': (44.427,-17.883,78.692)
C2': (44.454,-15.858,77.453)
C2: (42.082,-11.838,79.103)
N1: (42.650,-10.919,79.906)
N3: (42.449,-13.096,78.873)
N6: (44.297,-10.386,81.339)
N7: (45.347,-13.215,81.005)
N9: (44.241,-14.541,79.548)
O5': (46.465,-18.257,79.864)
O3': (44.984,-17.970,76.400)
OP1: (45.744,-5.928,85.494)
OP2: (46.419,-8.126,84.523)
C3': (40.934,-7.626,83.961)
C1': (40.632,-8.721,81.890)
C5': (43.384,-8.393,83.861)
O4': (41.960,-8.375,81.962)
C8: (41.310,-10.914,82.924)
O2': (39.521,-6.702,82.259)
C6: (39.650,-13.271,81.036)
C5: (40.225,-12.221,81.707)
C4: (39.884,-10.975,81.271)
P: (45.493,-7.034,84.557)
C4': (42.245,-7.693,83.187)
C2': (39.881,-7.903,82.901)
C2: (38.568,-11.724,79.754)
N1: (38.796,-13.009,80.039)
N3: (39.057,-10.631,80.287)
N6: (39.898,-14.505,81.403)
N7: (41.109,-12.191,82.774)
N9: (40.562,-10.151,82.096)
O5': (44.018,-7.561,84.786)
O3': (40.763,-6.358,84.580)
OP2: (46.419,-8.126,84.523)
C3': (40.934,-7.626,83.961)
C1': (40.632,-8.721,81.890)
C5': (43.384,-8.393,83.861)
O4': (41.960,-8.375,81.962)
C8: (41.310,-10.914,82.924)
O2': (39.521,-6.702,82.259)
C6: (39.650,-13.271,81.036)
C5: (40.225,-12.221,81.707)
C4: (39.884,-10.975,81.271)
P: (45.493,-7.034,84.557)
C4': (42.245,-7.693,83.187)
C2': (39.881,-7.903,82.901)
C2: (38.568,-11.724,79.754)
N1: (38.796,-13.009,80.039)
N3: (39.057,-10.631,80.287)
N6: (39.898,-14.505,81.403)
N7: (41.109,-12.191,82.774)
N9: (40.562,-10.151,82.096)
O5': (44.018,-7.561,84.786)
O3': (40.763,-6.358,84.580)
Image (generated by PyMOL):