Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12874:12873
Extra
PDB:
ATOM 1 O3' U A2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 2 P A A2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 3 OP1 A A2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 4 OP2 A A2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 5 O5' A A2874 26.891 15.766 1.987 1.00 51.91 O
ATOM 6 C5' A A2874 27.726 16.762 1.447 1.00 52.16 C
ATOM 7 C4' A A2874 28.834 16.196 0.623 1.00 52.28 C
ATOM 8 O4' A A2874 28.292 15.593 -0.568 1.00 52.76 O
ATOM 9 C3' A A2874 29.811 17.227 0.122 1.00 52.52 C
ATOM 10 O3' A A2874 30.841 17.468 1.046 1.00 52.06 O
ATOM 11 C2' A A2874 30.292 16.651 -1.185 1.00 52.93 C
ATOM 12 O2' A A2874 31.252 15.639 -0.936 1.00 52.58 O
ATOM 13 C1' A A2874 29.026 15.990 -1.692 1.00 53.20 C
ATOM 14 N9 A A2874 28.188 16.913 -2.492 1.00 53.78 N
ATOM 15 C8 A A2874 26.896 17.296 -2.280 1.00 53.90 C
ATOM 16 N7 A A2874 26.401 18.121 -3.166 1.00 54.48 N
ATOM 17 C5 A A2874 27.441 18.270 -4.047 1.00 54.75 C
ATOM 18 C6 A A2874 27.576 19.016 -5.221 1.00 55.37 C
ATOM 19 N6 A A2874 26.603 19.772 -5.756 1.00 55.86 N
ATOM 20 N1 A A2874 28.769 18.970 -5.858 1.00 55.49 N
ATOM 21 C2 A A2874 29.750 18.217 -5.364 1.00 55.04 C
ATOM 22 N3 A A2874 29.727 17.472 -4.266 1.00 54.44 N
ATOM 23 C4 A A2874 28.534 17.540 -3.654 1.00 54.33 C
ATOM 24 P A A2875 31.019 18.929 1.656 1.00 47.81 P
ATOM 25 OP1 A A2875 32.037 18.841 2.703 1.00 47.27 O
ATOM 26 OP2 A A2875 29.694 19.409 2.035 1.00 47.88 O
ATOM 27 O5' A A2875 31.577 19.754 0.407 1.00 48.38 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
ATOM 2 P A A2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 3 OP1 A A2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 4 OP2 A A2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 5 O5' A A2874 26.891 15.766 1.987 1.00 51.91 O
ATOM 6 C5' A A2874 27.726 16.762 1.447 1.00 52.16 C
ATOM 7 C4' A A2874 28.834 16.196 0.623 1.00 52.28 C
ATOM 8 O4' A A2874 28.292 15.593 -0.568 1.00 52.76 O
ATOM 9 C3' A A2874 29.811 17.227 0.122 1.00 52.52 C
ATOM 10 O3' A A2874 30.841 17.468 1.046 1.00 52.06 O
ATOM 11 C2' A A2874 30.292 16.651 -1.185 1.00 52.93 C
ATOM 12 O2' A A2874 31.252 15.639 -0.936 1.00 52.58 O
ATOM 13 C1' A A2874 29.026 15.990 -1.692 1.00 53.20 C
ATOM 14 N9 A A2874 28.188 16.913 -2.492 1.00 53.78 N
ATOM 15 C8 A A2874 26.896 17.296 -2.280 1.00 53.90 C
ATOM 16 N7 A A2874 26.401 18.121 -3.166 1.00 54.48 N
ATOM 17 C5 A A2874 27.441 18.270 -4.047 1.00 54.75 C
ATOM 18 C6 A A2874 27.576 19.016 -5.221 1.00 55.37 C
ATOM 19 N6 A A2874 26.603 19.772 -5.756 1.00 55.86 N
ATOM 20 N1 A A2874 28.769 18.970 -5.858 1.00 55.49 N
ATOM 21 C2 A A2874 29.750 18.217 -5.364 1.00 55.04 C
ATOM 22 N3 A A2874 29.727 17.472 -4.266 1.00 54.44 N
ATOM 23 C4 A A2874 28.534 17.540 -3.654 1.00 54.33 C
ATOM 24 P A A2875 31.019 18.929 1.656 1.00 47.81 P
ATOM 25 OP1 A A2875 32.037 18.841 2.703 1.00 47.27 O
ATOM 26 OP2 A A2875 29.694 19.409 2.035 1.00 47.88 O
ATOM 27 O5' A A2875 31.577 19.754 0.407 1.00 48.38 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
Atoms:
OP1: (24.919,15.126,3.366)
OP2: (26.888,16.312,4.432)
C3': (29.811,17.227,0.122)
C1': (29.026,15.990,-1.692)
C5': (27.726,16.762,1.447)
O4': (28.292,15.593,-0.568)
C8: (26.896,17.296,-2.280)
O2': (31.252,15.639,-0.936)
C6: (27.576,19.016,-5.221)
C5: (27.441,18.270,-4.047)
C4: (28.534,17.540,-3.654)
P: (26.010,16.096,3.258)
C4': (28.834,16.196,0.623)
C2': (30.292,16.651,-1.185)
C2: (29.750,18.217,-5.364)
N1: (28.769,18.970,-5.858)
N3: (29.727,17.472,-4.266)
N6: (26.603,19.772,-5.756)
N7: (26.401,18.121,-3.166)
N9: (28.188,16.913,-2.492)
O5': (26.891,15.766,1.987)
O3': (30.841,17.468,1.046)
OP2: (26.888,16.312,4.432)
C3': (29.811,17.227,0.122)
C1': (29.026,15.990,-1.692)
C5': (27.726,16.762,1.447)
O4': (28.292,15.593,-0.568)
C8: (26.896,17.296,-2.280)
O2': (31.252,15.639,-0.936)
C6: (27.576,19.016,-5.221)
C5: (27.441,18.270,-4.047)
C4: (28.534,17.540,-3.654)
P: (26.010,16.096,3.258)
C4': (28.834,16.196,0.623)
C2': (30.292,16.651,-1.185)
C2: (29.750,18.217,-5.364)
N1: (28.769,18.970,-5.858)
N3: (29.727,17.472,-4.266)
N6: (26.603,19.772,-5.756)
N7: (26.401,18.121,-3.166)
N9: (28.188,16.913,-2.492)
O5': (26.891,15.766,1.987)
O3': (30.841,17.468,1.046)
C4: (25.013,21.859,-2.506)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
Image (generated by PyMOL):