Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12394:12393
Extra
PDB:
ATOM 1 O3' U A2393 35.232 -33.189 47.646 1.00 36.61 O
ATOM 2 P A A2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 3 OP1 A A2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 4 OP2 A A2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 5 O5' A A2394 33.542 -32.199 49.089 1.00 37.51 O
ATOM 6 C5' A A2394 34.522 -31.251 49.375 1.00 37.29 C
ATOM 7 C4' A A2394 34.032 -29.879 49.094 1.00 37.15 C
ATOM 8 O4' A A2394 34.218 -29.579 47.693 1.00 37.27 O
ATOM 9 C3' A A2394 32.560 -29.652 49.348 1.00 37.16 C
ATOM 10 O3' A A2394 32.291 -29.406 50.725 1.00 36.99 O
ATOM 11 C2' A A2394 32.249 -28.477 48.422 1.00 37.13 C
ATOM 12 O2' A A2394 32.638 -27.247 49.029 1.00 36.89 O
ATOM 13 C1' A A2394 33.199 -28.754 47.245 1.00 37.27 C
ATOM 14 N9 A A2394 32.559 -29.451 46.150 1.00 37.54 N
ATOM 15 C8 A A2394 32.650 -30.783 45.893 1.00 37.75 C
ATOM 16 N7 A A2394 31.996 -31.066 44.791 1.00 37.99 N
ATOM 17 C5 A A2394 31.498 -29.853 44.325 1.00 37.91 C
ATOM 18 C6 A A2394 30.765 -29.455 43.211 1.00 38.07 C
ATOM 19 N6 A A2394 30.297 -30.231 42.216 1.00 38.37 N
ATOM 20 N1 A A2394 30.511 -28.133 43.119 1.00 37.93 N
ATOM 21 C2 A A2394 30.940 -27.283 44.043 1.00 37.66 C
ATOM 22 N3 A A2394 31.651 -27.566 45.114 1.00 37.49 N
ATOM 23 C4 A A2394 31.869 -28.860 45.167 1.00 37.64 C
ATOM 24 P A A2395 30.792 -29.555 51.353 1.00 36.82 P
ATOM 25 OP1 A A2395 30.954 -29.343 52.771 1.00 36.64 O
ATOM 26 OP2 A A2395 30.199 -30.836 50.898 1.00 37.08 O
ATOM 27 O5' A A2395 30.000 -28.341 50.706 1.00 36.78 O
TER
ATOM 1 O3' A B2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 2 P U B2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 3 OP1 U B2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 4 OP2 U B2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 5 O5' U B2393 36.190 -37.006 47.233 1.00 37.27 O
ATOM 6 C5' U B2393 36.847 -35.974 47.966 1.00 36.97 C
ATOM 7 C4' U B2393 37.022 -34.737 47.141 1.00 36.86 C
ATOM 8 O4' U B2393 37.699 -35.077 45.928 1.00 37.06 O
ATOM 9 C3' U B2393 35.748 -34.081 46.684 1.00 36.85 C
ATOM 10 O3' U B2393 35.232 -33.189 47.646 1.00 36.61 O
ATOM 11 C2' U B2393 36.138 -33.411 45.369 1.00 36.91 C
ATOM 12 O2' U B2393 36.721 -32.156 45.590 1.00 36.66 O
ATOM 13 C1' U B2393 37.222 -34.319 44.858 1.00 37.09 C
ATOM 14 N1 U B2393 36.750 -35.224 43.827 1.00 37.41 N
ATOM 15 C2 U B2393 36.501 -34.656 42.623 1.00 37.51 C
ATOM 16 O2 U B2393 36.621 -33.480 42.422 1.00 37.34 O
ATOM 17 N3 U B2393 36.119 -35.496 41.651 1.00 37.83 N
ATOM 18 C4 U B2393 35.966 -36.844 41.775 1.00 38.05 C
ATOM 19 O4 U B2393 35.573 -37.481 40.781 1.00 38.35 O
ATOM 20 C5 U B2393 36.264 -37.356 43.085 1.00 37.93 C
ATOM 21 C6 U B2393 36.652 -36.561 44.059 1.00 37.62 C
ATOM 22 P A B2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 23 OP1 A B2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 24 OP2 A B2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 25 O5' A B2394 33.542 -32.199 49.089 1.00 37.51 O
TER
ATOM 2 P A A2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 3 OP1 A A2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 4 OP2 A A2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 5 O5' A A2394 33.542 -32.199 49.089 1.00 37.51 O
ATOM 6 C5' A A2394 34.522 -31.251 49.375 1.00 37.29 C
ATOM 7 C4' A A2394 34.032 -29.879 49.094 1.00 37.15 C
ATOM 8 O4' A A2394 34.218 -29.579 47.693 1.00 37.27 O
ATOM 9 C3' A A2394 32.560 -29.652 49.348 1.00 37.16 C
ATOM 10 O3' A A2394 32.291 -29.406 50.725 1.00 36.99 O
ATOM 11 C2' A A2394 32.249 -28.477 48.422 1.00 37.13 C
ATOM 12 O2' A A2394 32.638 -27.247 49.029 1.00 36.89 O
ATOM 13 C1' A A2394 33.199 -28.754 47.245 1.00 37.27 C
ATOM 14 N9 A A2394 32.559 -29.451 46.150 1.00 37.54 N
ATOM 15 C8 A A2394 32.650 -30.783 45.893 1.00 37.75 C
ATOM 16 N7 A A2394 31.996 -31.066 44.791 1.00 37.99 N
ATOM 17 C5 A A2394 31.498 -29.853 44.325 1.00 37.91 C
ATOM 18 C6 A A2394 30.765 -29.455 43.211 1.00 38.07 C
ATOM 19 N6 A A2394 30.297 -30.231 42.216 1.00 38.37 N
ATOM 20 N1 A A2394 30.511 -28.133 43.119 1.00 37.93 N
ATOM 21 C2 A A2394 30.940 -27.283 44.043 1.00 37.66 C
ATOM 22 N3 A A2394 31.651 -27.566 45.114 1.00 37.49 N
ATOM 23 C4 A A2394 31.869 -28.860 45.167 1.00 37.64 C
ATOM 24 P A A2395 30.792 -29.555 51.353 1.00 36.82 P
ATOM 25 OP1 A A2395 30.954 -29.343 52.771 1.00 36.64 O
ATOM 26 OP2 A A2395 30.199 -30.836 50.898 1.00 37.08 O
ATOM 27 O5' A A2395 30.000 -28.341 50.706 1.00 36.78 O
TER
ATOM 1 O3' A B2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 2 P U B2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 3 OP1 U B2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 4 OP2 U B2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 5 O5' U B2393 36.190 -37.006 47.233 1.00 37.27 O
ATOM 6 C5' U B2393 36.847 -35.974 47.966 1.00 36.97 C
ATOM 7 C4' U B2393 37.022 -34.737 47.141 1.00 36.86 C
ATOM 8 O4' U B2393 37.699 -35.077 45.928 1.00 37.06 O
ATOM 9 C3' U B2393 35.748 -34.081 46.684 1.00 36.85 C
ATOM 10 O3' U B2393 35.232 -33.189 47.646 1.00 36.61 O
ATOM 11 C2' U B2393 36.138 -33.411 45.369 1.00 36.91 C
ATOM 12 O2' U B2393 36.721 -32.156 45.590 1.00 36.66 O
ATOM 13 C1' U B2393 37.222 -34.319 44.858 1.00 37.09 C
ATOM 14 N1 U B2393 36.750 -35.224 43.827 1.00 37.41 N
ATOM 15 C2 U B2393 36.501 -34.656 42.623 1.00 37.51 C
ATOM 16 O2 U B2393 36.621 -33.480 42.422 1.00 37.34 O
ATOM 17 N3 U B2393 36.119 -35.496 41.651 1.00 37.83 N
ATOM 18 C4 U B2393 35.966 -36.844 41.775 1.00 38.05 C
ATOM 19 O4 U B2393 35.573 -37.481 40.781 1.00 38.35 O
ATOM 20 C5 U B2393 36.264 -37.356 43.085 1.00 37.93 C
ATOM 21 C6 U B2393 36.652 -36.561 44.059 1.00 37.62 C
ATOM 22 P A B2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 23 OP1 A B2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 24 OP2 A B2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 25 O5' A B2394 33.542 -32.199 49.089 1.00 37.51 O
TER
Atoms:
OP1: (34.387,-34.481,49.587)
OP2: (32.903,-34.067,47.545)
C3': (32.560,-29.652,49.348)
C1': (33.199,-28.754,47.245)
C5': (34.522,-31.251,49.375)
O4': (34.218,-29.579,47.693)
C8: (32.650,-30.783,45.893)
O2': (32.638,-27.247,49.029)
C6: (30.765,-29.455,43.211)
C5: (31.498,-29.853,44.325)
C4: (31.869,-28.860,45.167)
P: (33.952,-33.584,48.501)
C4': (34.032,-29.879,49.094)
C2': (32.249,-28.477,48.422)
C2: (30.940,-27.283,44.043)
N1: (30.511,-28.133,43.119)
N3: (31.651,-27.566,45.114)
N6: (30.297,-30.231,42.216)
N7: (31.996,-31.066,44.791)
N9: (32.559,-29.451,46.150)
O5': (33.542,-32.199,49.089)
O3': (32.291,-29.406,50.725)
OP2: (32.903,-34.067,47.545)
C3': (32.560,-29.652,49.348)
C1': (33.199,-28.754,47.245)
C5': (34.522,-31.251,49.375)
O4': (34.218,-29.579,47.693)
C8: (32.650,-30.783,45.893)
O2': (32.638,-27.247,49.029)
C6: (30.765,-29.455,43.211)
C5: (31.498,-29.853,44.325)
C4: (31.869,-28.860,45.167)
P: (33.952,-33.584,48.501)
C4': (34.032,-29.879,49.094)
C2': (32.249,-28.477,48.422)
C2: (30.940,-27.283,44.043)
N1: (30.511,-28.133,43.119)
N3: (31.651,-27.566,45.114)
N6: (30.297,-30.231,42.216)
N7: (31.996,-31.066,44.791)
N9: (32.559,-29.451,46.150)
O5': (33.542,-32.199,49.089)
O3': (32.291,-29.406,50.725)
C4: (35.966,-36.844,41.775)
N3: (36.119,-35.496,41.651)
OP1: (35.970,-38.595,49.196)
OP2: (35.538,-39.432,46.780)
C2: (36.501,-34.656,42.623)
C1': (37.222,-34.319,44.858)
C3': (35.748,-34.081,46.684)
O5': (36.190,-37.006,47.233)
O4': (37.699,-35.077,45.928)
C5': (36.847,-35.974,47.966)
P: (36.272,-38.527,47.725)
C4': (37.022,-34.737,47.141)
C2': (36.138,-33.411,45.369)
O2': (36.721,-32.156,45.590)
N1: (36.750,-35.224,43.827)
O4: (35.573,-37.481,40.781)
O2: (36.621,-33.480,42.422)
C6: (36.652,-36.561,44.059)
C5: (36.264,-37.356,43.085)
O3': (35.232,-33.189,47.646)
N3: (36.119,-35.496,41.651)
OP1: (35.970,-38.595,49.196)
OP2: (35.538,-39.432,46.780)
C2: (36.501,-34.656,42.623)
C1': (37.222,-34.319,44.858)
C3': (35.748,-34.081,46.684)
O5': (36.190,-37.006,47.233)
O4': (37.699,-35.077,45.928)
C5': (36.847,-35.974,47.966)
P: (36.272,-38.527,47.725)
C4': (37.022,-34.737,47.141)
C2': (36.138,-33.411,45.369)
O2': (36.721,-32.156,45.590)
N1: (36.750,-35.224,43.827)
O4: (35.573,-37.481,40.781)
O2: (36.621,-33.480,42.422)
C6: (36.652,-36.561,44.059)
C5: (36.264,-37.356,43.085)
O3': (35.232,-33.189,47.646)
Image (generated by PyMOL):