Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A2113:A2112
Extra
PDB:
ATOM 1 O3' U A2112 53.624 0.905 -69.961 1.00 76.87 O
ATOM 2 P A A2113 52.512 -0.233 -69.749 1.00 79.09 P
ATOM 3 OP1 A A2113 51.205 0.142 -70.363 1.00 79.73 O
ATOM 4 OP2 A A2113 52.545 -0.662 -68.332 1.00 75.31 O
ATOM 5 O5' A A2113 53.165 -1.376 -70.627 1.00 71.34 O
ATOM 6 C5' A A2113 52.513 -2.596 -70.889 1.00 77.84 C
ATOM 7 C4' A A2113 53.539 -3.693 -70.890 1.00 78.22 C
ATOM 8 O4' A A2113 54.603 -3.349 -71.831 1.00 79.82 O
ATOM 9 C3' A A2113 54.208 -3.874 -69.532 1.00 71.76 C
ATOM 10 O3' A A2113 54.459 -5.249 -69.361 1.00 63.58 O
ATOM 11 C2' A A2113 55.524 -3.106 -69.686 1.00 72.94 C
ATOM 12 O2' A A2113 56.557 -3.566 -68.838 1.00 73.49 O
ATOM 13 C1' A A2113 55.850 -3.338 -71.160 1.00 74.76 C
ATOM 14 N9 A A2113 56.737 -2.332 -71.763 1.00 71.49 N
ATOM 15 C8 A A2113 56.620 -0.962 -71.778 1.00 74.32 C
ATOM 16 N7 A A2113 57.619 -0.351 -72.371 1.00 71.36 N
ATOM 17 C5 A A2113 58.445 -1.386 -72.783 1.00 69.47 C
ATOM 18 C6 A A2113 59.677 -1.398 -73.461 1.00 66.02 C
ATOM 19 N6 A A2113 60.322 -0.293 -73.843 1.00 66.72 N
ATOM 20 N1 A A2113 60.238 -2.599 -73.728 1.00 68.07 N
ATOM 21 C2 A A2113 59.606 -3.705 -73.324 1.00 70.07 C
ATOM 22 N3 A A2113 58.451 -3.822 -72.670 1.00 73.72 N
ATOM 23 C4 A A2113 57.912 -2.611 -72.426 1.00 72.12 C
ATOM 24 P A A2114 53.683 -6.071 -68.225 1.00 60.10 P
ATOM 25 OP1 A A2114 52.281 -6.297 -68.631 1.00 75.50 O
ATOM 26 OP2 A A2114 53.992 -5.475 -66.905 1.00 55.07 O
ATOM 27 O5' A A2114 54.473 -7.432 -68.315 1.00 54.36 O
TER
ATOM 1 O3' C B2111 56.729 5.745 -67.147 1.00 70.49 O
ATOM 2 P U B2112 55.614 4.856 -66.411 1.00 79.00 P
ATOM 3 OP1 U B2112 54.329 5.597 -66.534 1.00 80.12 O
ATOM 4 OP2 U B2112 56.135 4.491 -65.065 1.00 77.00 O
ATOM 5 O5' U B2112 55.523 3.552 -67.311 1.00 71.28 O
ATOM 6 C5' U B2112 55.365 3.698 -68.703 1.00 77.25 C
ATOM 7 C4' U B2112 55.415 2.366 -69.375 1.00 73.11 C
ATOM 8 O4' U B2112 56.744 1.791 -69.255 1.00 71.56 O
ATOM 9 C3' U B2112 54.417 1.345 -68.870 1.00 72.92 C
ATOM 10 O3' U B2112 53.624 0.905 -69.961 1.00 76.87 O
ATOM 11 C2' U B2112 55.282 0.313 -68.141 1.00 68.92 C
ATOM 12 O2' U B2112 54.831 -1.017 -68.200 1.00 72.76 O
ATOM 13 C1' U B2112 56.641 0.447 -68.821 1.00 75.33 C
ATOM 14 N1 U B2112 57.721 0.155 -67.862 1.00 74.97 N
ATOM 15 C2 U B2112 58.516 -0.980 -68.079 1.00 71.56 C
ATOM 16 O2 U B2112 58.354 -1.737 -69.011 1.00 68.33 O
ATOM 17 N3 U B2112 59.500 -1.195 -67.148 1.00 68.04 N
ATOM 18 C4 U B2112 59.773 -0.425 -66.035 1.00 70.99 C
ATOM 19 O4 U B2112 60.719 -0.735 -65.300 1.00 70.88 O
ATOM 20 C5 U B2112 58.906 0.717 -65.867 1.00 74.49 C
ATOM 21 C6 U B2112 57.943 0.965 -66.765 1.00 71.71 C
ATOM 22 P A B2113 52.512 -0.233 -69.749 1.00 79.09 P
ATOM 23 OP1 A B2113 51.205 0.142 -70.363 1.00 79.73 O
ATOM 24 OP2 A B2113 52.545 -0.662 -68.332 1.00 75.31 O
ATOM 25 O5' A B2113 53.165 -1.376 -70.627 1.00 71.34 O
TER
ATOM 2 P A A2113 52.512 -0.233 -69.749 1.00 79.09 P
ATOM 3 OP1 A A2113 51.205 0.142 -70.363 1.00 79.73 O
ATOM 4 OP2 A A2113 52.545 -0.662 -68.332 1.00 75.31 O
ATOM 5 O5' A A2113 53.165 -1.376 -70.627 1.00 71.34 O
ATOM 6 C5' A A2113 52.513 -2.596 -70.889 1.00 77.84 C
ATOM 7 C4' A A2113 53.539 -3.693 -70.890 1.00 78.22 C
ATOM 8 O4' A A2113 54.603 -3.349 -71.831 1.00 79.82 O
ATOM 9 C3' A A2113 54.208 -3.874 -69.532 1.00 71.76 C
ATOM 10 O3' A A2113 54.459 -5.249 -69.361 1.00 63.58 O
ATOM 11 C2' A A2113 55.524 -3.106 -69.686 1.00 72.94 C
ATOM 12 O2' A A2113 56.557 -3.566 -68.838 1.00 73.49 O
ATOM 13 C1' A A2113 55.850 -3.338 -71.160 1.00 74.76 C
ATOM 14 N9 A A2113 56.737 -2.332 -71.763 1.00 71.49 N
ATOM 15 C8 A A2113 56.620 -0.962 -71.778 1.00 74.32 C
ATOM 16 N7 A A2113 57.619 -0.351 -72.371 1.00 71.36 N
ATOM 17 C5 A A2113 58.445 -1.386 -72.783 1.00 69.47 C
ATOM 18 C6 A A2113 59.677 -1.398 -73.461 1.00 66.02 C
ATOM 19 N6 A A2113 60.322 -0.293 -73.843 1.00 66.72 N
ATOM 20 N1 A A2113 60.238 -2.599 -73.728 1.00 68.07 N
ATOM 21 C2 A A2113 59.606 -3.705 -73.324 1.00 70.07 C
ATOM 22 N3 A A2113 58.451 -3.822 -72.670 1.00 73.72 N
ATOM 23 C4 A A2113 57.912 -2.611 -72.426 1.00 72.12 C
ATOM 24 P A A2114 53.683 -6.071 -68.225 1.00 60.10 P
ATOM 25 OP1 A A2114 52.281 -6.297 -68.631 1.00 75.50 O
ATOM 26 OP2 A A2114 53.992 -5.475 -66.905 1.00 55.07 O
ATOM 27 O5' A A2114 54.473 -7.432 -68.315 1.00 54.36 O
TER
ATOM 1 O3' C B2111 56.729 5.745 -67.147 1.00 70.49 O
ATOM 2 P U B2112 55.614 4.856 -66.411 1.00 79.00 P
ATOM 3 OP1 U B2112 54.329 5.597 -66.534 1.00 80.12 O
ATOM 4 OP2 U B2112 56.135 4.491 -65.065 1.00 77.00 O
ATOM 5 O5' U B2112 55.523 3.552 -67.311 1.00 71.28 O
ATOM 6 C5' U B2112 55.365 3.698 -68.703 1.00 77.25 C
ATOM 7 C4' U B2112 55.415 2.366 -69.375 1.00 73.11 C
ATOM 8 O4' U B2112 56.744 1.791 -69.255 1.00 71.56 O
ATOM 9 C3' U B2112 54.417 1.345 -68.870 1.00 72.92 C
ATOM 10 O3' U B2112 53.624 0.905 -69.961 1.00 76.87 O
ATOM 11 C2' U B2112 55.282 0.313 -68.141 1.00 68.92 C
ATOM 12 O2' U B2112 54.831 -1.017 -68.200 1.00 72.76 O
ATOM 13 C1' U B2112 56.641 0.447 -68.821 1.00 75.33 C
ATOM 14 N1 U B2112 57.721 0.155 -67.862 1.00 74.97 N
ATOM 15 C2 U B2112 58.516 -0.980 -68.079 1.00 71.56 C
ATOM 16 O2 U B2112 58.354 -1.737 -69.011 1.00 68.33 O
ATOM 17 N3 U B2112 59.500 -1.195 -67.148 1.00 68.04 N
ATOM 18 C4 U B2112 59.773 -0.425 -66.035 1.00 70.99 C
ATOM 19 O4 U B2112 60.719 -0.735 -65.300 1.00 70.88 O
ATOM 20 C5 U B2112 58.906 0.717 -65.867 1.00 74.49 C
ATOM 21 C6 U B2112 57.943 0.965 -66.765 1.00 71.71 C
ATOM 22 P A B2113 52.512 -0.233 -69.749 1.00 79.09 P
ATOM 23 OP1 A B2113 51.205 0.142 -70.363 1.00 79.73 O
ATOM 24 OP2 A B2113 52.545 -0.662 -68.332 1.00 75.31 O
ATOM 25 O5' A B2113 53.165 -1.376 -70.627 1.00 71.34 O
TER
Atoms:
OP1: (51.205,0.142,-70.363)
OP2: (52.545,-0.662,-68.332)
C3': (54.208,-3.874,-69.532)
C1': (55.850,-3.338,-71.160)
C5': (52.513,-2.596,-70.889)
O4': (54.603,-3.349,-71.831)
C8: (56.620,-0.962,-71.778)
O2': (56.557,-3.566,-68.838)
C6: (59.677,-1.398,-73.461)
C5: (58.445,-1.386,-72.783)
C4: (57.912,-2.611,-72.426)
P: (52.512,-0.233,-69.749)
C4': (53.539,-3.693,-70.890)
C2': (55.524,-3.106,-69.686)
C2: (59.606,-3.705,-73.324)
N1: (60.238,-2.599,-73.728)
N3: (58.451,-3.822,-72.670)
N6: (60.322,-0.293,-73.843)
N7: (57.619,-0.351,-72.371)
N9: (56.737,-2.332,-71.763)
O5': (53.165,-1.376,-70.627)
O3': (54.459,-5.249,-69.361)
OP2: (52.545,-0.662,-68.332)
C3': (54.208,-3.874,-69.532)
C1': (55.850,-3.338,-71.160)
C5': (52.513,-2.596,-70.889)
O4': (54.603,-3.349,-71.831)
C8: (56.620,-0.962,-71.778)
O2': (56.557,-3.566,-68.838)
C6: (59.677,-1.398,-73.461)
C5: (58.445,-1.386,-72.783)
C4: (57.912,-2.611,-72.426)
P: (52.512,-0.233,-69.749)
C4': (53.539,-3.693,-70.890)
C2': (55.524,-3.106,-69.686)
C2: (59.606,-3.705,-73.324)
N1: (60.238,-2.599,-73.728)
N3: (58.451,-3.822,-72.670)
N6: (60.322,-0.293,-73.843)
N7: (57.619,-0.351,-72.371)
N9: (56.737,-2.332,-71.763)
O5': (53.165,-1.376,-70.627)
O3': (54.459,-5.249,-69.361)
C4: (59.773,-0.425,-66.035)
N3: (59.500,-1.195,-67.148)
OP1: (54.329,5.597,-66.534)
OP2: (56.135,4.491,-65.065)
C2: (58.516,-0.980,-68.079)
C1': (56.641,0.447,-68.821)
C3': (54.417,1.345,-68.870)
O5': (55.523,3.552,-67.311)
O4': (56.744,1.791,-69.255)
C5': (55.365,3.698,-68.703)
P: (55.614,4.856,-66.411)
C4': (55.415,2.366,-69.375)
C2': (55.282,0.313,-68.141)
O2': (54.831,-1.017,-68.200)
N1: (57.721,0.155,-67.862)
O4: (60.719,-0.735,-65.300)
O2: (58.354,-1.737,-69.011)
C6: (57.943,0.965,-66.765)
C5: (58.906,0.717,-65.867)
O3': (53.624,0.905,-69.961)
N3: (59.500,-1.195,-67.148)
OP1: (54.329,5.597,-66.534)
OP2: (56.135,4.491,-65.065)
C2: (58.516,-0.980,-68.079)
C1': (56.641,0.447,-68.821)
C3': (54.417,1.345,-68.870)
O5': (55.523,3.552,-67.311)
O4': (56.744,1.791,-69.255)
C5': (55.365,3.698,-68.703)
P: (55.614,4.856,-66.411)
C4': (55.415,2.366,-69.375)
C2': (55.282,0.313,-68.141)
O2': (54.831,-1.017,-68.200)
N1: (57.721,0.155,-67.862)
O4: (60.719,-0.735,-65.300)
O2: (58.354,-1.737,-69.011)
C6: (57.943,0.965,-66.765)
C5: (58.906,0.717,-65.867)
O3': (53.624,0.905,-69.961)
Image (generated by PyMOL):