ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQL:0250:0235

Extra

PDB:
ATOM 1 O3' A A 249 94.869 122.774 3.301 1.00 47.63 O
ATOM 2 P A A 250 96.443 122.775 3.638 1.00 50.59 P
ATOM 3 OP1 A A 250 96.612 122.659 5.102 1.00 54.01 O
ATOM 4 OP2 A A 250 97.100 123.898 2.920 1.00 52.96 O
ATOM 5 O5' A A 250 96.977 121.420 2.999 1.00 51.65 O
ATOM 6 C5' A A 250 96.627 121.045 1.655 1.00 49.63 C
ATOM 7 C4' A A 250 97.357 119.781 1.265 1.00 50.26 C
ATOM 8 O4' A A 250 96.900 119.356 -0.048 1.00 52.24 O
ATOM 9 C3' A A 250 98.873 119.905 1.163 1.00 49.73 C
ATOM 10 O3' A A 250 99.456 118.635 1.455 1.00 48.13 O
ATOM 11 C2' A A 250 99.066 120.239 -0.317 1.00 51.71 C
ATOM 12 O2' A A 250 100.344 119.880 -0.806 1.00 52.99 O
ATOM 13 C1' A A 250 97.986 119.366 -0.956 1.00 53.12 C
ATOM 14 N9 A A 250 97.492 119.825 -2.255 1.00 54.64 N
ATOM 15 C8 A A 250 97.649 119.193 -3.464 1.00 54.01 C
ATOM 16 N7 A A 250 97.071 119.813 -4.464 1.00 54.99 N
ATOM 17 C5 A A 250 96.499 120.934 -3.879 1.00 54.82 C
ATOM 18 C6 A A 250 95.737 121.993 -4.405 1.00 54.85 C
ATOM 19 N6 A A 250 95.402 122.101 -5.693 1.00 52.91 N
ATOM 20 N1 A A 250 95.321 122.951 -3.550 1.00 56.44 N
ATOM 21 C2 A A 250 95.651 122.844 -2.259 1.00 55.83 C
ATOM 22 N3 A A 250 96.359 121.898 -1.645 1.00 56.70 N
ATOM 23 C4 A A 250 96.758 120.960 -2.520 1.00 55.02 C
ATOM 24 P U A 251 100.581 118.501 2.599 1.00 48.87 P
ATOM 25 OP1 U A 251 101.379 119.753 2.702 1.00 47.89 O
ATOM 26 OP2 U A 251 101.279 117.199 2.390 1.00 46.00 O
ATOM 27 O5' U A 251 99.727 118.382 3.939 1.00 48.55 O
TER

ATOM 1 O3' G B 234 93.479 117.381 -8.215 1.00 62.79 O
ATOM 2 P A B 235 93.986 118.345 -9.396 1.00 62.73 P
ATOM 3 OP1 A B 235 93.506 117.756 -10.672 1.00 63.54 O
ATOM 4 OP2 A B 235 95.443 118.576 -9.198 1.00 60.77 O
ATOM 5 O5' A B 235 93.191 119.701 -9.150 1.00 61.12 O
ATOM 6 C5' A B 235 91.780 119.798 -9.444 1.00 59.36 C
ATOM 7 C4' A B 235 91.174 120.953 -8.682 1.00 60.12 C
ATOM 8 O4' A B 235 91.053 120.606 -7.268 1.00 59.16 O
ATOM 9 C3' A B 235 92.003 122.235 -8.727 1.00 59.41 C
ATOM 10 O3' A B 235 91.143 123.364 -8.653 1.00 60.94 O
ATOM 11 C2' A B 235 92.813 122.132 -7.440 1.00 58.18 C
ATOM 12 O2' A B 235 93.310 123.361 -6.960 1.00 58.04 O
ATOM 13 C1' A B 235 91.767 121.549 -6.494 1.00 58.25 C
ATOM 14 N9 A B 235 92.333 120.883 -5.323 1.00 56.96 N
ATOM 15 C8 A B 235 93.009 119.691 -5.260 1.00 56.59 C
ATOM 16 N7 A B 235 93.420 119.381 -4.057 1.00 55.24 N
ATOM 17 C5 A B 235 92.980 120.439 -3.272 1.00 55.22 C
ATOM 18 C6 A B 235 93.103 120.713 -1.900 1.00 53.26 C
ATOM 19 N6 A B 235 93.744 119.917 -1.043 1.00 52.69 N
ATOM 20 N1 A B 235 92.543 121.849 -1.433 1.00 51.88 N
ATOM 21 C2 A B 235 91.912 122.651 -2.293 1.00 53.20 C
ATOM 22 N3 A B 235 91.736 122.507 -3.604 1.00 55.72 N
ATOM 23 C4 A B 235 92.302 121.366 -4.037 1.00 55.25 C
ATOM 24 P A B 236 90.640 124.069 -10.002 1.00 61.69 P
ATOM 25 OP1 A B 236 91.740 123.943 -10.996 1.00 62.83 O
ATOM 26 OP2 A B 236 90.123 125.415 -9.639 1.00 61.86 O
ATOM 27 O5' A B 236 89.404 123.176 -10.466 1.00 59.69 O
TER

Atoms:
OP1: (96.612,122.659,5.102)
OP2: (97.100,123.898,2.920)
C3': (98.873,119.905,1.163)
C1': (97.986,119.366,-0.956)
C5': (96.627,121.045,1.655)
O4': (96.900,119.356,-0.048)
C8: (97.649,119.193,-3.464)
O2': (100.344,119.880,-0.806)
C6: (95.737,121.993,-4.405)
C5: (96.499,120.934,-3.879)
C4: (96.758,120.960,-2.520)
P: (96.443,122.775,3.638)
C4': (97.357,119.781,1.265)
C2': (99.066,120.239,-0.317)
C2: (95.651,122.844,-2.259)
N1: (95.321,122.951,-3.550)
N3: (96.359,121.898,-1.645)
N6: (95.402,122.101,-5.693)
N7: (97.071,119.813,-4.464)
N9: (97.492,119.825,-2.255)
O5': (96.977,121.420,2.999)
O3': (99.456,118.635,1.455)
OP1: (93.506,117.756,-10.672)
OP2: (95.443,118.576,-9.198)
C3': (92.003,122.235,-8.727)
C1': (91.767,121.549,-6.494)
C5': (91.780,119.798,-9.444)
O4': (91.053,120.606,-7.268)
C8: (93.009,119.691,-5.260)
O2': (93.310,123.361,-6.960)
C6: (93.103,120.713,-1.900)
C5: (92.980,120.439,-3.272)
C4: (92.302,121.366,-4.037)
P: (93.986,118.345,-9.396)
C4': (91.174,120.953,-8.682)
C2': (92.813,122.132,-7.440)
C2: (91.912,122.651,-2.293)
N1: (92.543,121.849,-1.433)
N3: (91.736,122.507,-3.604)
N6: (93.744,119.917,-1.043)
N7: (93.420,119.381,-4.057)
N9: (92.333,120.883,-5.323)
O5': (93.191,119.701,-9.150)
O3': (91.143,123.364,-8.653)
Image (generated by PyMOL):
PyMOL image
show in jmol