Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B53:B54
Extra
PDB:
ATOM 1 O3' C A 52 -6.611 11.831 15.781 1.00 53.13 O
ATOM 2 P A A 53 -5.171 11.681 16.470 1.00 51.23 P
ATOM 3 OP1 A A 53 -4.317 11.852 15.280 1.00 50.63 O
ATOM 4 OP2 A A 53 -5.034 10.473 17.314 1.00 51.42 O
ATOM 5 O5' A A 53 -5.017 12.941 17.429 1.00 49.55 O
ATOM 6 C5' A A 53 -5.530 14.209 17.072 1.00 48.67 C
ATOM 7 C4' A A 53 -5.664 15.054 18.305 1.00 48.56 C
ATOM 8 O4' A A 53 -6.649 14.480 19.196 1.00 50.02 O
ATOM 9 C3' A A 53 -4.405 15.117 19.137 1.00 50.07 C
ATOM 10 O3' A A 53 -3.532 16.114 18.635 1.00 53.13 O
ATOM 11 C2' A A 53 -4.929 15.432 20.529 1.00 48.85 C
ATOM 12 O2' A A 53 -5.206 16.802 20.679 1.00 48.15 O
ATOM 13 C1' A A 53 -6.246 14.662 20.542 1.00 48.48 C
ATOM 14 N9 A A 53 -6.140 13.348 21.177 1.00 47.68 N
ATOM 15 C8 A A 53 -5.983 12.129 20.570 1.00 48.00 C
ATOM 16 N7 A A 53 -5.907 11.126 21.412 1.00 47.74 N
ATOM 17 C5 A A 53 -6.025 11.726 22.657 1.00 46.72 C
ATOM 18 C6 A A 53 -6.026 11.206 23.959 1.00 45.64 C
ATOM 19 N6 A A 53 -5.894 9.911 24.238 1.00 45.47 N
ATOM 20 N1 A A 53 -6.166 12.071 24.980 1.00 45.11 N
ATOM 21 C2 A A 53 -6.293 13.370 24.705 1.00 45.51 C
ATOM 22 N3 A A 53 -6.310 13.983 23.527 1.00 47.52 N
ATOM 23 C4 A A 53 -6.172 13.093 22.529 1.00 47.49 C
ATOM 24 P C A 54 -1.992 16.094 19.055 1.00 54.02 P
ATOM 25 OP1 C A 54 -1.393 17.328 18.505 1.00 53.63 O
ATOM 26 OP2 C A 54 -1.441 14.768 18.666 1.00 54.04 O
ATOM 27 O5' C A 54 -2.038 16.202 20.645 1.00 53.31 O
TER
ATOM 1 O3' A B 53 -3.532 16.114 18.635 1.00 53.13 O
ATOM 2 P C B 54 -1.992 16.094 19.055 1.00 54.02 P
ATOM 3 OP1 C B 54 -1.393 17.328 18.505 1.00 53.63 O
ATOM 4 OP2 C B 54 -1.441 14.768 18.666 1.00 54.04 O
ATOM 5 O5' C B 54 -2.038 16.202 20.645 1.00 53.31 O
ATOM 6 C5' C B 54 -2.225 17.462 21.270 1.00 55.34 C
ATOM 7 C4' C B 54 -2.078 17.332 22.758 1.00 57.09 C
ATOM 8 O4' C B 54 -3.012 16.333 23.211 1.00 56.60 O
ATOM 9 C3' C B 54 -0.731 16.853 23.262 1.00 60.29 C
ATOM 10 O3' C B 54 0.172 17.946 23.405 1.00 67.02 O
ATOM 11 C2' C B 54 -1.086 16.209 24.597 1.00 58.32 C
ATOM 12 O2' C B 54 -1.231 17.165 25.624 1.00 58.37 O
ATOM 13 C1' C B 54 -2.465 15.619 24.303 1.00 56.07 C
ATOM 14 N1 C B 54 -2.501 14.181 23.973 1.00 53.82 N
ATOM 15 C2 C B 54 -2.629 13.250 25.007 1.00 53.49 C
ATOM 16 O2 C B 54 -2.675 13.660 26.184 1.00 56.59 O
ATOM 17 N3 C B 54 -2.705 11.931 24.702 1.00 51.34 N
ATOM 18 C4 C B 54 -2.661 11.540 23.425 1.00 51.20 C
ATOM 19 N4 C B 54 -2.755 10.234 23.153 1.00 50.96 N
ATOM 20 C5 C B 54 -2.519 12.468 22.361 1.00 51.19 C
ATOM 21 C6 C B 54 -2.435 13.763 22.675 1.00 52.56 C
ATOM 22 P U B 55 1.455 18.053 22.431 1.00 74.23 P
ATOM 23 OP1 U B 55 1.370 16.990 21.391 1.00 75.28 O
ATOM 24 OP2 U B 55 2.656 18.134 23.300 1.00 72.63 O
ATOM 25 O5' U B 55 1.271 19.446 21.684 1.00 76.92 O
TER
ATOM 2 P A A 53 -5.171 11.681 16.470 1.00 51.23 P
ATOM 3 OP1 A A 53 -4.317 11.852 15.280 1.00 50.63 O
ATOM 4 OP2 A A 53 -5.034 10.473 17.314 1.00 51.42 O
ATOM 5 O5' A A 53 -5.017 12.941 17.429 1.00 49.55 O
ATOM 6 C5' A A 53 -5.530 14.209 17.072 1.00 48.67 C
ATOM 7 C4' A A 53 -5.664 15.054 18.305 1.00 48.56 C
ATOM 8 O4' A A 53 -6.649 14.480 19.196 1.00 50.02 O
ATOM 9 C3' A A 53 -4.405 15.117 19.137 1.00 50.07 C
ATOM 10 O3' A A 53 -3.532 16.114 18.635 1.00 53.13 O
ATOM 11 C2' A A 53 -4.929 15.432 20.529 1.00 48.85 C
ATOM 12 O2' A A 53 -5.206 16.802 20.679 1.00 48.15 O
ATOM 13 C1' A A 53 -6.246 14.662 20.542 1.00 48.48 C
ATOM 14 N9 A A 53 -6.140 13.348 21.177 1.00 47.68 N
ATOM 15 C8 A A 53 -5.983 12.129 20.570 1.00 48.00 C
ATOM 16 N7 A A 53 -5.907 11.126 21.412 1.00 47.74 N
ATOM 17 C5 A A 53 -6.025 11.726 22.657 1.00 46.72 C
ATOM 18 C6 A A 53 -6.026 11.206 23.959 1.00 45.64 C
ATOM 19 N6 A A 53 -5.894 9.911 24.238 1.00 45.47 N
ATOM 20 N1 A A 53 -6.166 12.071 24.980 1.00 45.11 N
ATOM 21 C2 A A 53 -6.293 13.370 24.705 1.00 45.51 C
ATOM 22 N3 A A 53 -6.310 13.983 23.527 1.00 47.52 N
ATOM 23 C4 A A 53 -6.172 13.093 22.529 1.00 47.49 C
ATOM 24 P C A 54 -1.992 16.094 19.055 1.00 54.02 P
ATOM 25 OP1 C A 54 -1.393 17.328 18.505 1.00 53.63 O
ATOM 26 OP2 C A 54 -1.441 14.768 18.666 1.00 54.04 O
ATOM 27 O5' C A 54 -2.038 16.202 20.645 1.00 53.31 O
TER
ATOM 1 O3' A B 53 -3.532 16.114 18.635 1.00 53.13 O
ATOM 2 P C B 54 -1.992 16.094 19.055 1.00 54.02 P
ATOM 3 OP1 C B 54 -1.393 17.328 18.505 1.00 53.63 O
ATOM 4 OP2 C B 54 -1.441 14.768 18.666 1.00 54.04 O
ATOM 5 O5' C B 54 -2.038 16.202 20.645 1.00 53.31 O
ATOM 6 C5' C B 54 -2.225 17.462 21.270 1.00 55.34 C
ATOM 7 C4' C B 54 -2.078 17.332 22.758 1.00 57.09 C
ATOM 8 O4' C B 54 -3.012 16.333 23.211 1.00 56.60 O
ATOM 9 C3' C B 54 -0.731 16.853 23.262 1.00 60.29 C
ATOM 10 O3' C B 54 0.172 17.946 23.405 1.00 67.02 O
ATOM 11 C2' C B 54 -1.086 16.209 24.597 1.00 58.32 C
ATOM 12 O2' C B 54 -1.231 17.165 25.624 1.00 58.37 O
ATOM 13 C1' C B 54 -2.465 15.619 24.303 1.00 56.07 C
ATOM 14 N1 C B 54 -2.501 14.181 23.973 1.00 53.82 N
ATOM 15 C2 C B 54 -2.629 13.250 25.007 1.00 53.49 C
ATOM 16 O2 C B 54 -2.675 13.660 26.184 1.00 56.59 O
ATOM 17 N3 C B 54 -2.705 11.931 24.702 1.00 51.34 N
ATOM 18 C4 C B 54 -2.661 11.540 23.425 1.00 51.20 C
ATOM 19 N4 C B 54 -2.755 10.234 23.153 1.00 50.96 N
ATOM 20 C5 C B 54 -2.519 12.468 22.361 1.00 51.19 C
ATOM 21 C6 C B 54 -2.435 13.763 22.675 1.00 52.56 C
ATOM 22 P U B 55 1.455 18.053 22.431 1.00 74.23 P
ATOM 23 OP1 U B 55 1.370 16.990 21.391 1.00 75.28 O
ATOM 24 OP2 U B 55 2.656 18.134 23.300 1.00 72.63 O
ATOM 25 O5' U B 55 1.271 19.446 21.684 1.00 76.92 O
TER
Atoms:
OP1: (-4.317,11.852,15.280)
OP2: (-5.034,10.473,17.314)
C3': (-4.405,15.117,19.137)
C1': (-6.246,14.662,20.542)
C5': (-5.530,14.209,17.072)
O4': (-6.649,14.480,19.196)
C8: (-5.983,12.129,20.570)
O2': (-5.206,16.802,20.679)
C6: (-6.026,11.206,23.959)
C5: (-6.025,11.726,22.657)
C4: (-6.172,13.093,22.529)
P: (-5.171,11.681,16.470)
C4': (-5.664,15.054,18.305)
C2': (-4.929,15.432,20.529)
C2: (-6.293,13.370,24.705)
N1: (-6.166,12.071,24.980)
N3: (-6.310,13.983,23.527)
N6: (-5.894,9.911,24.238)
N7: (-5.907,11.126,21.412)
N9: (-6.140,13.348,21.177)
O5': (-5.017,12.941,17.429)
O3': (-3.532,16.114,18.635)
OP2: (-5.034,10.473,17.314)
C3': (-4.405,15.117,19.137)
C1': (-6.246,14.662,20.542)
C5': (-5.530,14.209,17.072)
O4': (-6.649,14.480,19.196)
C8: (-5.983,12.129,20.570)
O2': (-5.206,16.802,20.679)
C6: (-6.026,11.206,23.959)
C5: (-6.025,11.726,22.657)
C4: (-6.172,13.093,22.529)
P: (-5.171,11.681,16.470)
C4': (-5.664,15.054,18.305)
C2': (-4.929,15.432,20.529)
C2: (-6.293,13.370,24.705)
N1: (-6.166,12.071,24.980)
N3: (-6.310,13.983,23.527)
N6: (-5.894,9.911,24.238)
N7: (-5.907,11.126,21.412)
N9: (-6.140,13.348,21.177)
O5': (-5.017,12.941,17.429)
O3': (-3.532,16.114,18.635)
C2: (-2.629,13.250,25.007)
OP1: (-1.393,17.328,18.505)
OP2: (-1.441,14.768,18.666)
C4: (-2.661,11.540,23.425)
O5': (-2.038,16.202,20.645)
C3': (-0.731,16.853,23.262)
C1': (-2.465,15.619,24.303)
O4': (-3.012,16.333,23.211)
C5': (-2.225,17.462,21.270)
P: (-1.992,16.094,19.055)
O2: (-2.675,13.660,26.184)
C4': (-2.078,17.332,22.758)
C2': (-1.086,16.209,24.597)
O2': (-1.231,17.165,25.624)
N1: (-2.501,14.181,23.973)
N3: (-2.705,11.931,24.702)
N4: (-2.755,10.234,23.153)
C6: (-2.435,13.763,22.675)
C5: (-2.519,12.468,22.361)
O3': (0.172,17.946,23.405)
OP1: (-1.393,17.328,18.505)
OP2: (-1.441,14.768,18.666)
C4: (-2.661,11.540,23.425)
O5': (-2.038,16.202,20.645)
C3': (-0.731,16.853,23.262)
C1': (-2.465,15.619,24.303)
O4': (-3.012,16.333,23.211)
C5': (-2.225,17.462,21.270)
P: (-1.992,16.094,19.055)
O2: (-2.675,13.660,26.184)
C4': (-2.078,17.332,22.758)
C2': (-1.086,16.209,24.597)
O2': (-1.231,17.165,25.624)
N1: (-2.501,14.181,23.973)
N3: (-2.705,11.931,24.702)
N4: (-2.755,10.234,23.153)
C6: (-2.435,13.763,22.675)
C5: (-2.519,12.468,22.361)
O3': (0.172,17.946,23.405)
Image (generated by PyMOL):