Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X2:X3
Extra
PDB:
ATOM 1 O3' G A 1 -14.361 -3.139 -26.375 1.00 35.96 O
ATOM 2 P A A 2 -14.108 -2.016 -25.264 1.00 35.73 P
ATOM 3 OP1 A A 2 -12.655 -1.976 -24.987 1.00 36.16 O
ATOM 4 OP2 A A 2 -15.067 -2.246 -24.161 1.00 36.93 O
ATOM 5 O5' A A 2 -14.541 -0.662 -25.993 1.00 36.41 O
ATOM 6 C5' A A 2 -13.876 -0.220 -27.169 1.00 36.59 C
ATOM 7 C4' A A 2 -14.686 0.887 -27.814 1.00 37.23 C
ATOM 8 O4' A A 2 -15.980 0.367 -28.207 1.00 37.53 O
ATOM 9 C3' A A 2 -15.032 2.036 -26.881 1.00 37.21 C
ATOM 10 O3' A A 2 -13.952 2.953 -26.787 1.00 36.20 O
ATOM 11 C2' A A 2 -16.247 2.633 -27.582 1.00 37.54 C
ATOM 12 O2' A A 2 -15.897 3.421 -28.703 1.00 37.91 O
ATOM 13 C1' A A 2 -16.970 1.366 -28.032 1.00 37.53 C
ATOM 14 N9 A A 2 -17.959 0.881 -27.072 1.00 37.87 N
ATOM 15 C8 A A 2 -17.823 -0.159 -26.196 1.00 37.62 C
ATOM 16 N7 A A 2 -18.884 -0.371 -25.454 1.00 37.68 N
ATOM 17 C5 A A 2 -19.781 0.597 -25.873 1.00 37.75 C
ATOM 18 C6 A A 2 -21.097 0.906 -25.476 1.00 37.91 C
ATOM 19 N6 A A 2 -21.756 0.235 -24.523 1.00 37.01 N
ATOM 20 N1 A A 2 -21.709 1.937 -26.097 1.00 37.55 N
ATOM 21 C2 A A 2 -21.047 2.604 -27.051 1.00 37.86 C
ATOM 22 N3 A A 2 -19.811 2.404 -27.509 1.00 37.62 N
ATOM 23 C4 A A 2 -19.227 1.378 -26.871 1.00 37.89 C
ATOM 24 P C A 3 -13.618 3.621 -25.371 1.00 36.07 P
ATOM 25 OP1 C A 3 -12.287 4.260 -25.475 1.00 36.52 O
ATOM 26 OP2 C A 3 -13.879 2.615 -24.317 1.00 36.03 O
ATOM 27 O5' C A 3 -14.735 4.759 -25.239 1.00 35.77 O
TER
ATOM 1 O3' A B 2 -13.952 2.953 -26.787 1.00 36.20 O
ATOM 2 P C B 3 -13.618 3.621 -25.371 1.00 36.07 P
ATOM 3 OP1 C B 3 -12.287 4.260 -25.475 1.00 36.52 O
ATOM 4 OP2 C B 3 -13.879 2.615 -24.317 1.00 36.03 O
ATOM 5 O5' C B 3 -14.735 4.759 -25.239 1.00 35.77 O
ATOM 6 C5' C B 3 -14.838 5.775 -26.227 1.00 35.58 C
ATOM 7 C4' C B 3 -16.078 6.619 -25.999 1.00 35.42 C
ATOM 8 O4' C B 3 -17.261 5.841 -26.303 1.00 35.24 O
ATOM 9 C3' C B 3 -16.305 7.060 -24.563 1.00 35.66 C
ATOM 10 O3' C B 3 -15.490 8.179 -24.248 1.00 37.17 O
ATOM 11 C2' C B 3 -17.791 7.402 -24.604 1.00 35.35 C
ATOM 12 O2' C B 3 -18.061 8.657 -25.204 1.00 34.94 O
ATOM 13 C1' C B 3 -18.328 6.264 -25.471 1.00 34.92 C
ATOM 14 N1 C B 3 -18.810 5.094 -24.672 1.00 35.09 N
ATOM 15 C2 C B 3 -20.108 5.096 -24.149 1.00 34.75 C
ATOM 16 O2 C B 3 -20.843 6.068 -24.363 1.00 34.83 O
ATOM 17 N3 C B 3 -20.526 4.028 -23.422 1.00 34.79 N
ATOM 18 C4 C B 3 -19.707 2.997 -23.214 1.00 34.47 C
ATOM 19 N4 C B 3 -20.164 1.968 -22.491 1.00 33.74 N
ATOM 20 C5 C B 3 -18.380 2.976 -23.734 1.00 33.95 C
ATOM 21 C6 C B 3 -17.980 4.032 -24.450 1.00 34.84 C
ATOM 22 P U B 4 -14.887 8.332 -22.772 1.00 38.07 P
ATOM 23 OP1 U B 4 -14.024 9.535 -22.764 1.00 38.41 O
ATOM 24 OP2 U B 4 -14.340 7.021 -22.362 1.00 38.47 O
ATOM 25 O5' U B 4 -16.184 8.626 -21.881 1.00 38.34 O
TER
ATOM 2 P A A 2 -14.108 -2.016 -25.264 1.00 35.73 P
ATOM 3 OP1 A A 2 -12.655 -1.976 -24.987 1.00 36.16 O
ATOM 4 OP2 A A 2 -15.067 -2.246 -24.161 1.00 36.93 O
ATOM 5 O5' A A 2 -14.541 -0.662 -25.993 1.00 36.41 O
ATOM 6 C5' A A 2 -13.876 -0.220 -27.169 1.00 36.59 C
ATOM 7 C4' A A 2 -14.686 0.887 -27.814 1.00 37.23 C
ATOM 8 O4' A A 2 -15.980 0.367 -28.207 1.00 37.53 O
ATOM 9 C3' A A 2 -15.032 2.036 -26.881 1.00 37.21 C
ATOM 10 O3' A A 2 -13.952 2.953 -26.787 1.00 36.20 O
ATOM 11 C2' A A 2 -16.247 2.633 -27.582 1.00 37.54 C
ATOM 12 O2' A A 2 -15.897 3.421 -28.703 1.00 37.91 O
ATOM 13 C1' A A 2 -16.970 1.366 -28.032 1.00 37.53 C
ATOM 14 N9 A A 2 -17.959 0.881 -27.072 1.00 37.87 N
ATOM 15 C8 A A 2 -17.823 -0.159 -26.196 1.00 37.62 C
ATOM 16 N7 A A 2 -18.884 -0.371 -25.454 1.00 37.68 N
ATOM 17 C5 A A 2 -19.781 0.597 -25.873 1.00 37.75 C
ATOM 18 C6 A A 2 -21.097 0.906 -25.476 1.00 37.91 C
ATOM 19 N6 A A 2 -21.756 0.235 -24.523 1.00 37.01 N
ATOM 20 N1 A A 2 -21.709 1.937 -26.097 1.00 37.55 N
ATOM 21 C2 A A 2 -21.047 2.604 -27.051 1.00 37.86 C
ATOM 22 N3 A A 2 -19.811 2.404 -27.509 1.00 37.62 N
ATOM 23 C4 A A 2 -19.227 1.378 -26.871 1.00 37.89 C
ATOM 24 P C A 3 -13.618 3.621 -25.371 1.00 36.07 P
ATOM 25 OP1 C A 3 -12.287 4.260 -25.475 1.00 36.52 O
ATOM 26 OP2 C A 3 -13.879 2.615 -24.317 1.00 36.03 O
ATOM 27 O5' C A 3 -14.735 4.759 -25.239 1.00 35.77 O
TER
ATOM 1 O3' A B 2 -13.952 2.953 -26.787 1.00 36.20 O
ATOM 2 P C B 3 -13.618 3.621 -25.371 1.00 36.07 P
ATOM 3 OP1 C B 3 -12.287 4.260 -25.475 1.00 36.52 O
ATOM 4 OP2 C B 3 -13.879 2.615 -24.317 1.00 36.03 O
ATOM 5 O5' C B 3 -14.735 4.759 -25.239 1.00 35.77 O
ATOM 6 C5' C B 3 -14.838 5.775 -26.227 1.00 35.58 C
ATOM 7 C4' C B 3 -16.078 6.619 -25.999 1.00 35.42 C
ATOM 8 O4' C B 3 -17.261 5.841 -26.303 1.00 35.24 O
ATOM 9 C3' C B 3 -16.305 7.060 -24.563 1.00 35.66 C
ATOM 10 O3' C B 3 -15.490 8.179 -24.248 1.00 37.17 O
ATOM 11 C2' C B 3 -17.791 7.402 -24.604 1.00 35.35 C
ATOM 12 O2' C B 3 -18.061 8.657 -25.204 1.00 34.94 O
ATOM 13 C1' C B 3 -18.328 6.264 -25.471 1.00 34.92 C
ATOM 14 N1 C B 3 -18.810 5.094 -24.672 1.00 35.09 N
ATOM 15 C2 C B 3 -20.108 5.096 -24.149 1.00 34.75 C
ATOM 16 O2 C B 3 -20.843 6.068 -24.363 1.00 34.83 O
ATOM 17 N3 C B 3 -20.526 4.028 -23.422 1.00 34.79 N
ATOM 18 C4 C B 3 -19.707 2.997 -23.214 1.00 34.47 C
ATOM 19 N4 C B 3 -20.164 1.968 -22.491 1.00 33.74 N
ATOM 20 C5 C B 3 -18.380 2.976 -23.734 1.00 33.95 C
ATOM 21 C6 C B 3 -17.980 4.032 -24.450 1.00 34.84 C
ATOM 22 P U B 4 -14.887 8.332 -22.772 1.00 38.07 P
ATOM 23 OP1 U B 4 -14.024 9.535 -22.764 1.00 38.41 O
ATOM 24 OP2 U B 4 -14.340 7.021 -22.362 1.00 38.47 O
ATOM 25 O5' U B 4 -16.184 8.626 -21.881 1.00 38.34 O
TER
Atoms:
OP1: (-12.655,-1.976,-24.987)
OP2: (-15.067,-2.246,-24.161)
C3': (-15.032,2.036,-26.881)
C1': (-16.970,1.366,-28.032)
C5': (-13.876,-0.220,-27.169)
O4': (-15.980,0.367,-28.207)
C8: (-17.823,-0.159,-26.196)
O2': (-15.897,3.421,-28.703)
C6: (-21.097,0.906,-25.476)
C5: (-19.781,0.597,-25.873)
C4: (-19.227,1.378,-26.871)
P: (-14.108,-2.016,-25.264)
C4': (-14.686,0.887,-27.814)
C2': (-16.247,2.633,-27.582)
C2: (-21.047,2.604,-27.051)
N1: (-21.709,1.937,-26.097)
N3: (-19.811,2.404,-27.509)
N6: (-21.756,0.235,-24.523)
N7: (-18.884,-0.371,-25.454)
N9: (-17.959,0.881,-27.072)
O5': (-14.541,-0.662,-25.993)
O3': (-13.952,2.953,-26.787)
OP2: (-15.067,-2.246,-24.161)
C3': (-15.032,2.036,-26.881)
C1': (-16.970,1.366,-28.032)
C5': (-13.876,-0.220,-27.169)
O4': (-15.980,0.367,-28.207)
C8: (-17.823,-0.159,-26.196)
O2': (-15.897,3.421,-28.703)
C6: (-21.097,0.906,-25.476)
C5: (-19.781,0.597,-25.873)
C4: (-19.227,1.378,-26.871)
P: (-14.108,-2.016,-25.264)
C4': (-14.686,0.887,-27.814)
C2': (-16.247,2.633,-27.582)
C2: (-21.047,2.604,-27.051)
N1: (-21.709,1.937,-26.097)
N3: (-19.811,2.404,-27.509)
N6: (-21.756,0.235,-24.523)
N7: (-18.884,-0.371,-25.454)
N9: (-17.959,0.881,-27.072)
O5': (-14.541,-0.662,-25.993)
O3': (-13.952,2.953,-26.787)
C2: (-20.108,5.096,-24.149)
OP1: (-12.287,4.260,-25.475)
OP2: (-13.879,2.615,-24.317)
C4: (-19.707,2.997,-23.214)
O5': (-14.735,4.759,-25.239)
C3': (-16.305,7.060,-24.563)
C1': (-18.328,6.264,-25.471)
O4': (-17.261,5.841,-26.303)
C5': (-14.838,5.775,-26.227)
P: (-13.618,3.621,-25.371)
O2: (-20.843,6.068,-24.363)
C4': (-16.078,6.619,-25.999)
C2': (-17.791,7.402,-24.604)
O2': (-18.061,8.657,-25.204)
N1: (-18.810,5.094,-24.672)
N3: (-20.526,4.028,-23.422)
N4: (-20.164,1.968,-22.491)
C6: (-17.980,4.032,-24.450)
C5: (-18.380,2.976,-23.734)
O3': (-15.490,8.179,-24.248)
OP1: (-12.287,4.260,-25.475)
OP2: (-13.879,2.615,-24.317)
C4: (-19.707,2.997,-23.214)
O5': (-14.735,4.759,-25.239)
C3': (-16.305,7.060,-24.563)
C1': (-18.328,6.264,-25.471)
O4': (-17.261,5.841,-26.303)
C5': (-14.838,5.775,-26.227)
P: (-13.618,3.621,-25.371)
O2: (-20.843,6.068,-24.363)
C4': (-16.078,6.619,-25.999)
C2': (-17.791,7.402,-24.604)
O2': (-18.061,8.657,-25.204)
N1: (-18.810,5.094,-24.672)
N3: (-20.526,4.028,-23.422)
N4: (-20.164,1.968,-22.491)
C6: (-17.980,4.032,-24.450)
C5: (-18.380,2.976,-23.734)
O3': (-15.490,8.179,-24.248)
Image (generated by PyMOL):