Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0348:0349
Extra
PDB:
ATOM 1 O3' U A 347 57.744 117.646 8.371 1.00 75.21 O
ATOM 2 P A A 348 57.746 116.873 6.955 1.00 77.20 P
ATOM 3 OP1 A A 348 58.328 115.524 7.208 1.00 75.94 O
ATOM 4 OP2 A A 348 58.359 117.749 5.924 1.00 76.27 O
ATOM 5 O5' A A 348 56.197 116.707 6.602 1.00 76.15 O
ATOM 6 C5' A A 348 55.369 115.768 7.318 1.00 75.47 C
ATOM 7 C4' A A 348 53.979 115.722 6.722 1.00 75.04 C
ATOM 8 O4' A A 348 53.300 116.984 6.942 1.00 74.07 O
ATOM 9 C3' A A 348 53.906 115.532 5.218 1.00 75.66 C
ATOM 10 O3' A A 348 54.056 114.170 4.858 1.00 78.73 O
ATOM 11 C2' A A 348 52.520 116.065 4.892 1.00 74.25 C
ATOM 12 O2' A A 348 51.494 115.144 5.199 1.00 73.80 O
ATOM 13 C1' A A 348 52.424 117.246 5.856 1.00 73.30 C
ATOM 14 N9 A A 348 52.789 118.533 5.262 1.00 71.58 N
ATOM 15 C8 A A 348 53.971 119.224 5.391 1.00 70.89 C
ATOM 16 N7 A A 348 53.975 120.384 4.782 1.00 69.62 N
ATOM 17 C5 A A 348 52.716 120.460 4.202 1.00 69.95 C
ATOM 18 C6 A A 348 52.088 121.456 3.428 1.00 68.98 C
ATOM 19 N6 A A 348 52.666 122.616 3.104 1.00 67.28 N
ATOM 20 N1 A A 348 50.828 121.216 2.998 1.00 68.30 N
ATOM 21 C2 A A 348 50.247 120.053 3.331 1.00 68.92 C
ATOM 22 N3 A A 348 50.730 119.046 4.060 1.00 69.67 N
ATOM 23 C4 A A 348 51.982 119.317 4.473 1.00 70.59 C
ATOM 24 P C A 349 54.704 113.794 3.440 1.00 80.78 P
ATOM 25 OP1 C A 349 54.683 112.310 3.341 1.00 81.20 O
ATOM 26 OP2 C A 349 55.995 114.518 3.305 1.00 81.21 O
ATOM 27 O5' C A 349 53.673 114.399 2.386 1.00 81.00 O
TER
ATOM 1 O3' A B 348 54.056 114.170 4.858 1.00 78.73 O
ATOM 2 P C B 349 54.704 113.794 3.440 1.00 80.78 P
ATOM 3 OP1 C B 349 54.683 112.310 3.341 1.00 81.20 O
ATOM 4 OP2 C B 349 55.995 114.518 3.305 1.00 81.21 O
ATOM 5 O5' C B 349 53.673 114.399 2.386 1.00 81.00 O
ATOM 6 C5' C B 349 52.346 113.860 2.262 1.00 82.88 C
ATOM 7 C4' C B 349 51.536 114.680 1.288 1.00 85.42 C
ATOM 8 O4' C B 349 51.314 116.007 1.835 1.00 85.63 O
ATOM 9 C3' C B 349 52.186 114.948 -0.061 1.00 87.33 C
ATOM 10 O3' C B 349 52.077 113.845 -0.957 1.00 90.10 O
ATOM 11 C2' C B 349 51.428 116.183 -0.531 1.00 86.18 C
ATOM 12 O2' C B 349 50.140 115.875 -1.026 1.00 85.29 O
ATOM 13 C1' C B 349 51.296 116.962 0.782 1.00 85.31 C
ATOM 14 N1 C B 349 52.406 117.915 0.993 1.00 84.20 N
ATOM 15 C2 C B 349 52.268 119.238 0.533 1.00 83.40 C
ATOM 16 O2 C B 349 51.203 119.584 -0.008 1.00 81.89 O
ATOM 17 N3 C B 349 53.299 120.104 0.693 1.00 83.28 N
ATOM 18 C4 C B 349 54.426 119.699 1.292 1.00 83.85 C
ATOM 19 N4 C B 349 55.421 120.583 1.423 1.00 83.40 N
ATOM 20 C5 C B 349 54.585 118.369 1.782 1.00 84.09 C
ATOM 21 C6 C B 349 53.562 117.521 1.614 1.00 84.42 C
ATOM 22 P G B 350 53.294 113.510 -1.958 1.00 92.34 P
ATOM 23 OP1 G B 350 52.888 112.313 -2.741 1.00 92.35 O
ATOM 24 OP2 G B 350 54.563 113.476 -1.179 1.00 90.55 O
ATOM 25 O5' G B 350 53.333 114.771 -2.938 1.00 92.78 O
TER
ATOM 2 P A A 348 57.746 116.873 6.955 1.00 77.20 P
ATOM 3 OP1 A A 348 58.328 115.524 7.208 1.00 75.94 O
ATOM 4 OP2 A A 348 58.359 117.749 5.924 1.00 76.27 O
ATOM 5 O5' A A 348 56.197 116.707 6.602 1.00 76.15 O
ATOM 6 C5' A A 348 55.369 115.768 7.318 1.00 75.47 C
ATOM 7 C4' A A 348 53.979 115.722 6.722 1.00 75.04 C
ATOM 8 O4' A A 348 53.300 116.984 6.942 1.00 74.07 O
ATOM 9 C3' A A 348 53.906 115.532 5.218 1.00 75.66 C
ATOM 10 O3' A A 348 54.056 114.170 4.858 1.00 78.73 O
ATOM 11 C2' A A 348 52.520 116.065 4.892 1.00 74.25 C
ATOM 12 O2' A A 348 51.494 115.144 5.199 1.00 73.80 O
ATOM 13 C1' A A 348 52.424 117.246 5.856 1.00 73.30 C
ATOM 14 N9 A A 348 52.789 118.533 5.262 1.00 71.58 N
ATOM 15 C8 A A 348 53.971 119.224 5.391 1.00 70.89 C
ATOM 16 N7 A A 348 53.975 120.384 4.782 1.00 69.62 N
ATOM 17 C5 A A 348 52.716 120.460 4.202 1.00 69.95 C
ATOM 18 C6 A A 348 52.088 121.456 3.428 1.00 68.98 C
ATOM 19 N6 A A 348 52.666 122.616 3.104 1.00 67.28 N
ATOM 20 N1 A A 348 50.828 121.216 2.998 1.00 68.30 N
ATOM 21 C2 A A 348 50.247 120.053 3.331 1.00 68.92 C
ATOM 22 N3 A A 348 50.730 119.046 4.060 1.00 69.67 N
ATOM 23 C4 A A 348 51.982 119.317 4.473 1.00 70.59 C
ATOM 24 P C A 349 54.704 113.794 3.440 1.00 80.78 P
ATOM 25 OP1 C A 349 54.683 112.310 3.341 1.00 81.20 O
ATOM 26 OP2 C A 349 55.995 114.518 3.305 1.00 81.21 O
ATOM 27 O5' C A 349 53.673 114.399 2.386 1.00 81.00 O
TER
ATOM 1 O3' A B 348 54.056 114.170 4.858 1.00 78.73 O
ATOM 2 P C B 349 54.704 113.794 3.440 1.00 80.78 P
ATOM 3 OP1 C B 349 54.683 112.310 3.341 1.00 81.20 O
ATOM 4 OP2 C B 349 55.995 114.518 3.305 1.00 81.21 O
ATOM 5 O5' C B 349 53.673 114.399 2.386 1.00 81.00 O
ATOM 6 C5' C B 349 52.346 113.860 2.262 1.00 82.88 C
ATOM 7 C4' C B 349 51.536 114.680 1.288 1.00 85.42 C
ATOM 8 O4' C B 349 51.314 116.007 1.835 1.00 85.63 O
ATOM 9 C3' C B 349 52.186 114.948 -0.061 1.00 87.33 C
ATOM 10 O3' C B 349 52.077 113.845 -0.957 1.00 90.10 O
ATOM 11 C2' C B 349 51.428 116.183 -0.531 1.00 86.18 C
ATOM 12 O2' C B 349 50.140 115.875 -1.026 1.00 85.29 O
ATOM 13 C1' C B 349 51.296 116.962 0.782 1.00 85.31 C
ATOM 14 N1 C B 349 52.406 117.915 0.993 1.00 84.20 N
ATOM 15 C2 C B 349 52.268 119.238 0.533 1.00 83.40 C
ATOM 16 O2 C B 349 51.203 119.584 -0.008 1.00 81.89 O
ATOM 17 N3 C B 349 53.299 120.104 0.693 1.00 83.28 N
ATOM 18 C4 C B 349 54.426 119.699 1.292 1.00 83.85 C
ATOM 19 N4 C B 349 55.421 120.583 1.423 1.00 83.40 N
ATOM 20 C5 C B 349 54.585 118.369 1.782 1.00 84.09 C
ATOM 21 C6 C B 349 53.562 117.521 1.614 1.00 84.42 C
ATOM 22 P G B 350 53.294 113.510 -1.958 1.00 92.34 P
ATOM 23 OP1 G B 350 52.888 112.313 -2.741 1.00 92.35 O
ATOM 24 OP2 G B 350 54.563 113.476 -1.179 1.00 90.55 O
ATOM 25 O5' G B 350 53.333 114.771 -2.938 1.00 92.78 O
TER
Atoms:
OP1: (58.328,115.524,7.208)
OP2: (58.359,117.749,5.924)
C3': (53.906,115.532,5.218)
C1': (52.424,117.246,5.856)
C5': (55.369,115.768,7.318)
O4': (53.300,116.984,6.942)
C8: (53.971,119.224,5.391)
O2': (51.494,115.144,5.199)
C6: (52.088,121.456,3.428)
C5: (52.716,120.460,4.202)
C4: (51.982,119.317,4.473)
P: (57.746,116.873,6.955)
C4': (53.979,115.722,6.722)
C2': (52.520,116.065,4.892)
C2: (50.247,120.053,3.331)
N1: (50.828,121.216,2.998)
N3: (50.730,119.046,4.060)
N6: (52.666,122.616,3.104)
N7: (53.975,120.384,4.782)
N9: (52.789,118.533,5.262)
O5': (56.197,116.707,6.602)
O3': (54.056,114.170,4.858)
OP2: (58.359,117.749,5.924)
C3': (53.906,115.532,5.218)
C1': (52.424,117.246,5.856)
C5': (55.369,115.768,7.318)
O4': (53.300,116.984,6.942)
C8: (53.971,119.224,5.391)
O2': (51.494,115.144,5.199)
C6: (52.088,121.456,3.428)
C5: (52.716,120.460,4.202)
C4: (51.982,119.317,4.473)
P: (57.746,116.873,6.955)
C4': (53.979,115.722,6.722)
C2': (52.520,116.065,4.892)
C2: (50.247,120.053,3.331)
N1: (50.828,121.216,2.998)
N3: (50.730,119.046,4.060)
N6: (52.666,122.616,3.104)
N7: (53.975,120.384,4.782)
N9: (52.789,118.533,5.262)
O5': (56.197,116.707,6.602)
O3': (54.056,114.170,4.858)
C2: (52.268,119.238,0.533)
OP1: (54.683,112.310,3.341)
OP2: (55.995,114.518,3.305)
C4: (54.426,119.699,1.292)
O5': (53.673,114.399,2.386)
C3': (52.186,114.948,-0.061)
C1': (51.296,116.962,0.782)
O4': (51.314,116.007,1.835)
C5': (52.346,113.860,2.262)
P: (54.704,113.794,3.440)
O2: (51.203,119.584,-0.008)
C4': (51.536,114.680,1.288)
C2': (51.428,116.183,-0.531)
O2': (50.140,115.875,-1.026)
N1: (52.406,117.915,0.993)
N3: (53.299,120.104,0.693)
N4: (55.421,120.583,1.423)
C6: (53.562,117.521,1.614)
C5: (54.585,118.369,1.782)
O3': (52.077,113.845,-0.957)
OP1: (54.683,112.310,3.341)
OP2: (55.995,114.518,3.305)
C4: (54.426,119.699,1.292)
O5': (53.673,114.399,2.386)
C3': (52.186,114.948,-0.061)
C1': (51.296,116.962,0.782)
O4': (51.314,116.007,1.835)
C5': (52.346,113.860,2.262)
P: (54.704,113.794,3.440)
O2: (51.203,119.584,-0.008)
C4': (51.536,114.680,1.288)
C2': (51.428,116.183,-0.531)
O2': (50.140,115.875,-1.026)
N1: (52.406,117.915,0.993)
N3: (53.299,120.104,0.693)
N4: (55.421,120.583,1.423)
C6: (53.562,117.521,1.614)
C5: (54.585,118.369,1.782)
O3': (52.077,113.845,-0.957)
Image (generated by PyMOL):