Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02001:02002
Extra
PDB:
ATOM 1 O3' A A2000 49.532 148.083 83.582 1.00 40.24 O
ATOM 2 P A A2001 48.875 146.647 83.838 1.00 40.11 P
ATOM 3 OP1 A A2001 48.651 146.061 82.501 1.00 40.46 O
ATOM 4 OP2 A A2001 47.731 146.807 84.775 1.00 40.52 O
ATOM 5 O5' A A2001 50.020 145.828 84.577 1.00 41.44 O
ATOM 6 C5' A A2001 51.352 145.790 84.035 1.00 41.76 C
ATOM 7 C4' A A2001 52.313 145.261 85.061 1.00 41.47 C
ATOM 8 O4' A A2001 52.313 146.144 86.208 1.00 39.75 O
ATOM 9 C3' A A2001 51.959 143.901 85.639 1.00 42.66 C
ATOM 10 O3' A A2001 52.414 142.852 84.789 1.00 44.45 O
ATOM 11 C2' A A2001 52.690 143.929 86.972 1.00 41.88 C
ATOM 12 O2' A A2001 54.073 143.704 86.817 1.00 42.07 O
ATOM 13 C1' A A2001 52.483 145.385 87.394 1.00 40.90 C
ATOM 14 N9 A A2001 51.316 145.610 88.255 1.00 41.99 N
ATOM 15 C8 A A2001 50.099 146.126 87.885 1.00 42.21 C
ATOM 16 N7 A A2001 49.259 146.267 88.884 1.00 43.23 N
ATOM 17 C5 A A2001 49.964 145.802 89.986 1.00 41.59 C
ATOM 18 C6 A A2001 49.628 145.694 91.353 1.00 41.15 C
ATOM 19 N6 A A2001 48.452 146.068 91.870 1.00 38.30 N
ATOM 20 N1 A A2001 50.558 145.183 92.183 1.00 41.30 N
ATOM 21 C2 A A2001 51.735 144.809 91.673 1.00 41.92 C
ATOM 22 N3 A A2001 52.168 144.863 90.419 1.00 42.05 N
ATOM 23 C4 A A2001 51.226 145.377 89.612 1.00 41.67 C
ATOM 24 P C A2002 51.723 141.403 84.853 1.00 44.03 P
ATOM 25 OP1 C A2002 52.346 140.630 83.756 1.00 43.76 O
ATOM 26 OP2 C A2002 50.251 141.566 84.881 1.00 45.24 O
ATOM 27 O5' C A2002 52.210 140.789 86.246 1.00 43.45 O
TER
ATOM 1 O3' A B2001 52.414 142.852 84.789 1.00 44.45 O
ATOM 2 P C B2002 51.723 141.403 84.853 1.00 44.03 P
ATOM 3 OP1 C B2002 52.346 140.630 83.756 1.00 43.76 O
ATOM 4 OP2 C B2002 50.251 141.566 84.881 1.00 45.24 O
ATOM 5 O5' C B2002 52.210 140.789 86.246 1.00 43.45 O
ATOM 6 C5' C B2002 53.547 140.259 86.389 1.00 43.71 C
ATOM 7 C4' C B2002 53.825 139.879 87.824 1.00 43.89 C
ATOM 8 O4' C B2002 53.520 141.009 88.678 1.00 45.48 O
ATOM 9 C3' C B2002 52.989 138.755 88.408 1.00 44.55 C
ATOM 10 O3' C B2002 53.519 137.480 88.077 1.00 44.11 O
ATOM 11 C2' C B2002 53.101 139.020 89.901 1.00 45.27 C
ATOM 12 O2' C B2002 54.324 138.584 90.447 1.00 46.61 O
ATOM 13 C1' C B2002 53.065 140.546 89.936 1.00 46.18 C
ATOM 14 N1 C B2002 51.721 141.093 90.199 1.00 48.41 N
ATOM 15 C2 C B2002 51.258 141.114 91.517 1.00 49.96 C
ATOM 16 O2 C B2002 51.981 140.650 92.412 1.00 54.19 O
ATOM 17 N3 C B2002 50.043 141.627 91.786 1.00 48.94 N
ATOM 18 C4 C B2002 49.289 142.097 90.797 1.00 49.17 C
ATOM 19 N4 C B2002 48.089 142.588 91.110 1.00 50.08 N
ATOM 20 C5 C B2002 49.728 142.083 89.443 1.00 48.86 C
ATOM 21 C6 C B2002 50.938 141.576 89.190 1.00 48.34 C
ATOM 22 P U B2003 52.551 136.342 87.489 1.00 44.09 P
ATOM 23 OP1 U B2003 53.386 135.133 87.293 1.00 45.19 O
ATOM 24 OP2 U B2003 51.828 136.918 86.336 1.00 46.27 O
ATOM 25 O5' U B2003 51.465 136.093 88.629 1.00 40.54 O
TER
ATOM 2 P A A2001 48.875 146.647 83.838 1.00 40.11 P
ATOM 3 OP1 A A2001 48.651 146.061 82.501 1.00 40.46 O
ATOM 4 OP2 A A2001 47.731 146.807 84.775 1.00 40.52 O
ATOM 5 O5' A A2001 50.020 145.828 84.577 1.00 41.44 O
ATOM 6 C5' A A2001 51.352 145.790 84.035 1.00 41.76 C
ATOM 7 C4' A A2001 52.313 145.261 85.061 1.00 41.47 C
ATOM 8 O4' A A2001 52.313 146.144 86.208 1.00 39.75 O
ATOM 9 C3' A A2001 51.959 143.901 85.639 1.00 42.66 C
ATOM 10 O3' A A2001 52.414 142.852 84.789 1.00 44.45 O
ATOM 11 C2' A A2001 52.690 143.929 86.972 1.00 41.88 C
ATOM 12 O2' A A2001 54.073 143.704 86.817 1.00 42.07 O
ATOM 13 C1' A A2001 52.483 145.385 87.394 1.00 40.90 C
ATOM 14 N9 A A2001 51.316 145.610 88.255 1.00 41.99 N
ATOM 15 C8 A A2001 50.099 146.126 87.885 1.00 42.21 C
ATOM 16 N7 A A2001 49.259 146.267 88.884 1.00 43.23 N
ATOM 17 C5 A A2001 49.964 145.802 89.986 1.00 41.59 C
ATOM 18 C6 A A2001 49.628 145.694 91.353 1.00 41.15 C
ATOM 19 N6 A A2001 48.452 146.068 91.870 1.00 38.30 N
ATOM 20 N1 A A2001 50.558 145.183 92.183 1.00 41.30 N
ATOM 21 C2 A A2001 51.735 144.809 91.673 1.00 41.92 C
ATOM 22 N3 A A2001 52.168 144.863 90.419 1.00 42.05 N
ATOM 23 C4 A A2001 51.226 145.377 89.612 1.00 41.67 C
ATOM 24 P C A2002 51.723 141.403 84.853 1.00 44.03 P
ATOM 25 OP1 C A2002 52.346 140.630 83.756 1.00 43.76 O
ATOM 26 OP2 C A2002 50.251 141.566 84.881 1.00 45.24 O
ATOM 27 O5' C A2002 52.210 140.789 86.246 1.00 43.45 O
TER
ATOM 1 O3' A B2001 52.414 142.852 84.789 1.00 44.45 O
ATOM 2 P C B2002 51.723 141.403 84.853 1.00 44.03 P
ATOM 3 OP1 C B2002 52.346 140.630 83.756 1.00 43.76 O
ATOM 4 OP2 C B2002 50.251 141.566 84.881 1.00 45.24 O
ATOM 5 O5' C B2002 52.210 140.789 86.246 1.00 43.45 O
ATOM 6 C5' C B2002 53.547 140.259 86.389 1.00 43.71 C
ATOM 7 C4' C B2002 53.825 139.879 87.824 1.00 43.89 C
ATOM 8 O4' C B2002 53.520 141.009 88.678 1.00 45.48 O
ATOM 9 C3' C B2002 52.989 138.755 88.408 1.00 44.55 C
ATOM 10 O3' C B2002 53.519 137.480 88.077 1.00 44.11 O
ATOM 11 C2' C B2002 53.101 139.020 89.901 1.00 45.27 C
ATOM 12 O2' C B2002 54.324 138.584 90.447 1.00 46.61 O
ATOM 13 C1' C B2002 53.065 140.546 89.936 1.00 46.18 C
ATOM 14 N1 C B2002 51.721 141.093 90.199 1.00 48.41 N
ATOM 15 C2 C B2002 51.258 141.114 91.517 1.00 49.96 C
ATOM 16 O2 C B2002 51.981 140.650 92.412 1.00 54.19 O
ATOM 17 N3 C B2002 50.043 141.627 91.786 1.00 48.94 N
ATOM 18 C4 C B2002 49.289 142.097 90.797 1.00 49.17 C
ATOM 19 N4 C B2002 48.089 142.588 91.110 1.00 50.08 N
ATOM 20 C5 C B2002 49.728 142.083 89.443 1.00 48.86 C
ATOM 21 C6 C B2002 50.938 141.576 89.190 1.00 48.34 C
ATOM 22 P U B2003 52.551 136.342 87.489 1.00 44.09 P
ATOM 23 OP1 U B2003 53.386 135.133 87.293 1.00 45.19 O
ATOM 24 OP2 U B2003 51.828 136.918 86.336 1.00 46.27 O
ATOM 25 O5' U B2003 51.465 136.093 88.629 1.00 40.54 O
TER
Atoms:
OP1: (48.651,146.061,82.501)
OP2: (47.731,146.807,84.775)
C3': (51.959,143.901,85.639)
C1': (52.483,145.385,87.394)
C5': (51.352,145.790,84.035)
O4': (52.313,146.144,86.208)
C8: (50.099,146.126,87.885)
O2': (54.073,143.704,86.817)
C6: (49.628,145.694,91.353)
C5: (49.964,145.802,89.986)
C4: (51.226,145.377,89.612)
P: (48.875,146.647,83.838)
C4': (52.313,145.261,85.061)
C2': (52.690,143.929,86.972)
C2: (51.735,144.809,91.673)
N1: (50.558,145.183,92.183)
N3: (52.168,144.863,90.419)
N6: (48.452,146.068,91.870)
N7: (49.259,146.267,88.884)
N9: (51.316,145.610,88.255)
O5': (50.020,145.828,84.577)
O3': (52.414,142.852,84.789)
OP2: (47.731,146.807,84.775)
C3': (51.959,143.901,85.639)
C1': (52.483,145.385,87.394)
C5': (51.352,145.790,84.035)
O4': (52.313,146.144,86.208)
C8: (50.099,146.126,87.885)
O2': (54.073,143.704,86.817)
C6: (49.628,145.694,91.353)
C5: (49.964,145.802,89.986)
C4: (51.226,145.377,89.612)
P: (48.875,146.647,83.838)
C4': (52.313,145.261,85.061)
C2': (52.690,143.929,86.972)
C2: (51.735,144.809,91.673)
N1: (50.558,145.183,92.183)
N3: (52.168,144.863,90.419)
N6: (48.452,146.068,91.870)
N7: (49.259,146.267,88.884)
N9: (51.316,145.610,88.255)
O5': (50.020,145.828,84.577)
O3': (52.414,142.852,84.789)
C2: (51.258,141.114,91.517)
OP1: (52.346,140.630,83.756)
OP2: (50.251,141.566,84.881)
C4: (49.289,142.097,90.797)
O5': (52.210,140.789,86.246)
C3': (52.989,138.755,88.408)
C1': (53.065,140.546,89.936)
O4': (53.520,141.009,88.678)
C5': (53.547,140.259,86.389)
P: (51.723,141.403,84.853)
O2: (51.981,140.650,92.412)
C4': (53.825,139.879,87.824)
C2': (53.101,139.020,89.901)
O2': (54.324,138.584,90.447)
N1: (51.721,141.093,90.199)
N3: (50.043,141.627,91.786)
N4: (48.089,142.588,91.110)
C6: (50.938,141.576,89.190)
C5: (49.728,142.083,89.443)
O3': (53.519,137.480,88.077)
OP1: (52.346,140.630,83.756)
OP2: (50.251,141.566,84.881)
C4: (49.289,142.097,90.797)
O5': (52.210,140.789,86.246)
C3': (52.989,138.755,88.408)
C1': (53.065,140.546,89.936)
O4': (53.520,141.009,88.678)
C5': (53.547,140.259,86.389)
P: (51.723,141.403,84.853)
O2: (51.981,140.650,92.412)
C4': (53.825,139.879,87.824)
C2': (53.101,139.020,89.901)
O2': (54.324,138.584,90.447)
N1: (51.721,141.093,90.199)
N3: (50.043,141.627,91.786)
N4: (48.089,142.588,91.110)
C6: (50.938,141.576,89.190)
C5: (49.728,142.083,89.443)
O3': (53.519,137.480,88.077)
Image (generated by PyMOL):