Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11235:11236
Extra
PDB:
ATOM 1 O3' A A1234 15.136 -3.828 -6.341 1.00 73.54 O
ATOM 2 P A A1235 15.545 -3.761 -4.798 1.00 75.71 P
ATOM 3 OP1 A A1235 14.275 -3.544 -4.032 1.00 75.59 O
ATOM 4 OP2 A A1235 16.643 -2.753 -4.669 1.00 75.48 O
ATOM 5 O5' A A1235 16.105 -5.236 -4.510 1.00 75.46 O
ATOM 6 C5' A A1235 15.210 -6.321 -4.260 1.00 75.50 C
ATOM 7 C4' A A1235 15.941 -7.621 -4.001 1.00 75.25 C
ATOM 8 O4' A A1235 16.844 -7.910 -5.101 1.00 75.61 O
ATOM 9 C3' A A1235 16.833 -7.653 -2.779 1.00 74.55 C
ATOM 10 O3' A A1235 16.120 -7.892 -1.597 1.00 74.14 O
ATOM 11 C2' A A1235 17.803 -8.764 -3.108 1.00 74.54 C
ATOM 12 O2' A A1235 17.184 -10.019 -2.887 1.00 74.57 O
ATOM 13 C1' A A1235 18.002 -8.559 -4.616 1.00 75.20 C
ATOM 14 N9 A A1235 19.191 -7.712 -4.912 1.00 75.13 N
ATOM 15 C8 A A1235 19.289 -6.339 -5.014 1.00 75.16 C
ATOM 16 N7 A A1235 20.496 -5.889 -5.256 1.00 75.08 N
ATOM 17 C5 A A1235 21.259 -7.040 -5.304 1.00 74.99 C
ATOM 18 C6 A A1235 22.628 -7.255 -5.512 1.00 74.88 C
ATOM 19 N6 A A1235 23.507 -6.283 -5.729 1.00 74.85 N
ATOM 20 N1 A A1235 23.085 -8.518 -5.492 1.00 74.82 N
ATOM 21 C2 A A1235 22.207 -9.500 -5.275 1.00 74.87 C
ATOM 22 N3 A A1235 20.897 -9.435 -5.061 1.00 74.96 N
ATOM 23 C4 A A1235 20.478 -8.160 -5.090 1.00 75.02 C
ATOM 24 P C A1236 16.721 -7.391 -0.199 1.00 65.69 P
ATOM 25 OP1 C A1236 16.093 -8.240 0.878 1.00 65.34 O
ATOM 26 OP2 C A1236 16.526 -5.905 -0.160 1.00 65.71 O
ATOM 27 O5' C A1236 18.281 -7.730 -0.354 1.00 65.50 O
TER
ATOM 1 O3' A B1235 16.120 -7.892 -1.597 1.00 74.14 O
ATOM 2 P C B1236 16.721 -7.391 -0.199 1.00 65.69 P
ATOM 3 OP1 C B1236 16.093 -8.240 0.878 1.00 65.34 O
ATOM 4 OP2 C B1236 16.526 -5.905 -0.160 1.00 65.71 O
ATOM 5 O5' C B1236 18.281 -7.730 -0.354 1.00 65.50 O
ATOM 6 C5' C B1236 19.076 -8.191 0.740 1.00 64.91 C
ATOM 7 C4' C B1236 20.133 -9.185 0.282 1.00 64.96 C
ATOM 8 O4' C B1236 20.469 -8.946 -1.105 1.00 65.51 O
ATOM 9 C3' C B1236 21.468 -9.129 0.991 1.00 64.46 C
ATOM 10 O3' C B1236 21.458 -9.843 2.202 1.00 63.97 O
ATOM 11 C2' C B1236 22.412 -9.728 -0.036 1.00 64.77 C
ATOM 12 O2' C B1236 22.320 -11.135 -0.038 1.00 64.83 O
ATOM 13 C1' C B1236 21.820 -9.221 -1.334 1.00 65.41 C
ATOM 14 N1 C B1236 22.462 -8.001 -1.787 1.00 65.50 N
ATOM 15 C2 C B1236 23.716 -8.150 -2.355 1.00 65.58 C
ATOM 16 O2 C B1236 24.189 -9.305 -2.448 1.00 65.57 O
ATOM 17 N3 C B1236 24.371 -7.047 -2.794 1.00 65.67 N
ATOM 18 C4 C B1236 23.806 -5.857 -2.668 1.00 65.69 C
ATOM 19 N4 C B1236 24.496 -4.812 -3.123 1.00 65.80 N
ATOM 20 C5 C B1236 22.521 -5.702 -2.066 1.00 65.60 C
ATOM 21 C6 C B1236 21.881 -6.790 -1.652 1.00 65.52 C
ATOM 22 P U B1237 22.096 -9.220 3.526 1.00 61.73 P
ATOM 23 OP1 U B1237 21.491 -9.954 4.652 1.00 61.38 O
ATOM 24 OP2 U B1237 21.929 -7.735 3.457 1.00 61.77 O
ATOM 25 O5' U B1237 23.644 -9.615 3.383 1.00 61.59 O
TER
ATOM 2 P A A1235 15.545 -3.761 -4.798 1.00 75.71 P
ATOM 3 OP1 A A1235 14.275 -3.544 -4.032 1.00 75.59 O
ATOM 4 OP2 A A1235 16.643 -2.753 -4.669 1.00 75.48 O
ATOM 5 O5' A A1235 16.105 -5.236 -4.510 1.00 75.46 O
ATOM 6 C5' A A1235 15.210 -6.321 -4.260 1.00 75.50 C
ATOM 7 C4' A A1235 15.941 -7.621 -4.001 1.00 75.25 C
ATOM 8 O4' A A1235 16.844 -7.910 -5.101 1.00 75.61 O
ATOM 9 C3' A A1235 16.833 -7.653 -2.779 1.00 74.55 C
ATOM 10 O3' A A1235 16.120 -7.892 -1.597 1.00 74.14 O
ATOM 11 C2' A A1235 17.803 -8.764 -3.108 1.00 74.54 C
ATOM 12 O2' A A1235 17.184 -10.019 -2.887 1.00 74.57 O
ATOM 13 C1' A A1235 18.002 -8.559 -4.616 1.00 75.20 C
ATOM 14 N9 A A1235 19.191 -7.712 -4.912 1.00 75.13 N
ATOM 15 C8 A A1235 19.289 -6.339 -5.014 1.00 75.16 C
ATOM 16 N7 A A1235 20.496 -5.889 -5.256 1.00 75.08 N
ATOM 17 C5 A A1235 21.259 -7.040 -5.304 1.00 74.99 C
ATOM 18 C6 A A1235 22.628 -7.255 -5.512 1.00 74.88 C
ATOM 19 N6 A A1235 23.507 -6.283 -5.729 1.00 74.85 N
ATOM 20 N1 A A1235 23.085 -8.518 -5.492 1.00 74.82 N
ATOM 21 C2 A A1235 22.207 -9.500 -5.275 1.00 74.87 C
ATOM 22 N3 A A1235 20.897 -9.435 -5.061 1.00 74.96 N
ATOM 23 C4 A A1235 20.478 -8.160 -5.090 1.00 75.02 C
ATOM 24 P C A1236 16.721 -7.391 -0.199 1.00 65.69 P
ATOM 25 OP1 C A1236 16.093 -8.240 0.878 1.00 65.34 O
ATOM 26 OP2 C A1236 16.526 -5.905 -0.160 1.00 65.71 O
ATOM 27 O5' C A1236 18.281 -7.730 -0.354 1.00 65.50 O
TER
ATOM 1 O3' A B1235 16.120 -7.892 -1.597 1.00 74.14 O
ATOM 2 P C B1236 16.721 -7.391 -0.199 1.00 65.69 P
ATOM 3 OP1 C B1236 16.093 -8.240 0.878 1.00 65.34 O
ATOM 4 OP2 C B1236 16.526 -5.905 -0.160 1.00 65.71 O
ATOM 5 O5' C B1236 18.281 -7.730 -0.354 1.00 65.50 O
ATOM 6 C5' C B1236 19.076 -8.191 0.740 1.00 64.91 C
ATOM 7 C4' C B1236 20.133 -9.185 0.282 1.00 64.96 C
ATOM 8 O4' C B1236 20.469 -8.946 -1.105 1.00 65.51 O
ATOM 9 C3' C B1236 21.468 -9.129 0.991 1.00 64.46 C
ATOM 10 O3' C B1236 21.458 -9.843 2.202 1.00 63.97 O
ATOM 11 C2' C B1236 22.412 -9.728 -0.036 1.00 64.77 C
ATOM 12 O2' C B1236 22.320 -11.135 -0.038 1.00 64.83 O
ATOM 13 C1' C B1236 21.820 -9.221 -1.334 1.00 65.41 C
ATOM 14 N1 C B1236 22.462 -8.001 -1.787 1.00 65.50 N
ATOM 15 C2 C B1236 23.716 -8.150 -2.355 1.00 65.58 C
ATOM 16 O2 C B1236 24.189 -9.305 -2.448 1.00 65.57 O
ATOM 17 N3 C B1236 24.371 -7.047 -2.794 1.00 65.67 N
ATOM 18 C4 C B1236 23.806 -5.857 -2.668 1.00 65.69 C
ATOM 19 N4 C B1236 24.496 -4.812 -3.123 1.00 65.80 N
ATOM 20 C5 C B1236 22.521 -5.702 -2.066 1.00 65.60 C
ATOM 21 C6 C B1236 21.881 -6.790 -1.652 1.00 65.52 C
ATOM 22 P U B1237 22.096 -9.220 3.526 1.00 61.73 P
ATOM 23 OP1 U B1237 21.491 -9.954 4.652 1.00 61.38 O
ATOM 24 OP2 U B1237 21.929 -7.735 3.457 1.00 61.77 O
ATOM 25 O5' U B1237 23.644 -9.615 3.383 1.00 61.59 O
TER
Atoms:
OP1: (14.275,-3.544,-4.032)
OP2: (16.643,-2.753,-4.669)
C3': (16.833,-7.653,-2.779)
C1': (18.002,-8.559,-4.616)
C5': (15.210,-6.321,-4.260)
O4': (16.844,-7.910,-5.101)
C8: (19.289,-6.339,-5.014)
O2': (17.184,-10.019,-2.887)
C6: (22.628,-7.255,-5.512)
C5: (21.259,-7.040,-5.304)
C4: (20.478,-8.160,-5.090)
P: (15.545,-3.761,-4.798)
C4': (15.941,-7.621,-4.001)
C2': (17.803,-8.764,-3.108)
C2: (22.207,-9.500,-5.275)
N1: (23.085,-8.518,-5.492)
N3: (20.897,-9.435,-5.061)
N6: (23.507,-6.283,-5.729)
N7: (20.496,-5.889,-5.256)
N9: (19.191,-7.712,-4.912)
O5': (16.105,-5.236,-4.510)
O3': (16.120,-7.892,-1.597)
OP2: (16.643,-2.753,-4.669)
C3': (16.833,-7.653,-2.779)
C1': (18.002,-8.559,-4.616)
C5': (15.210,-6.321,-4.260)
O4': (16.844,-7.910,-5.101)
C8: (19.289,-6.339,-5.014)
O2': (17.184,-10.019,-2.887)
C6: (22.628,-7.255,-5.512)
C5: (21.259,-7.040,-5.304)
C4: (20.478,-8.160,-5.090)
P: (15.545,-3.761,-4.798)
C4': (15.941,-7.621,-4.001)
C2': (17.803,-8.764,-3.108)
C2: (22.207,-9.500,-5.275)
N1: (23.085,-8.518,-5.492)
N3: (20.897,-9.435,-5.061)
N6: (23.507,-6.283,-5.729)
N7: (20.496,-5.889,-5.256)
N9: (19.191,-7.712,-4.912)
O5': (16.105,-5.236,-4.510)
O3': (16.120,-7.892,-1.597)
C2: (23.716,-8.150,-2.355)
OP1: (16.093,-8.240,0.878)
OP2: (16.526,-5.905,-0.160)
C4: (23.806,-5.857,-2.668)
O5': (18.281,-7.730,-0.354)
C3': (21.468,-9.129,0.991)
C1': (21.820,-9.221,-1.334)
O4': (20.469,-8.946,-1.105)
C5': (19.076,-8.191,0.740)
P: (16.721,-7.391,-0.199)
O2: (24.189,-9.305,-2.448)
C4': (20.133,-9.185,0.282)
C2': (22.412,-9.728,-0.036)
O2': (22.320,-11.135,-0.038)
N1: (22.462,-8.001,-1.787)
N3: (24.371,-7.047,-2.794)
N4: (24.496,-4.812,-3.123)
C6: (21.881,-6.790,-1.652)
C5: (22.521,-5.702,-2.066)
O3': (21.458,-9.843,2.202)
OP1: (16.093,-8.240,0.878)
OP2: (16.526,-5.905,-0.160)
C4: (23.806,-5.857,-2.668)
O5': (18.281,-7.730,-0.354)
C3': (21.468,-9.129,0.991)
C1': (21.820,-9.221,-1.334)
O4': (20.469,-8.946,-1.105)
C5': (19.076,-8.191,0.740)
P: (16.721,-7.391,-0.199)
O2: (24.189,-9.305,-2.448)
C4': (20.133,-9.185,0.282)
C2': (22.412,-9.728,-0.036)
O2': (22.320,-11.135,-0.038)
N1: (22.462,-8.001,-1.787)
N3: (24.371,-7.047,-2.794)
N4: (24.496,-4.812,-3.123)
C6: (21.881,-6.790,-1.652)
C5: (22.521,-5.702,-2.066)
O3': (21.458,-9.843,2.202)
Image (generated by PyMOL):