Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD4:A4:A5
Extra
PDB:
ATOM 1 O3' C A 3 3.161 12.196 85.095 1.00 38.63 O
ATOM 2 P A A 4 4.424 13.117 85.487 1.00 39.12 P
ATOM 3 OP1 A A 4 4.465 13.176 86.974 1.00 39.18 O
ATOM 4 OP2 A A 4 4.361 14.378 84.710 1.00 39.86 O
ATOM 5 O5' A A 4 5.667 12.269 84.962 1.00 37.18 O
ATOM 6 C5' A A 4 6.802 12.015 85.785 1.00 31.28 C
ATOM 7 C4' A A 4 6.674 10.662 86.446 1.00 27.97 C
ATOM 8 O4' A A 4 6.130 9.694 85.505 1.00 26.52 O
ATOM 9 C3' A A 4 7.986 10.050 86.908 1.00 27.14 C
ATOM 10 O3' A A 4 8.353 10.526 88.194 1.00 28.12 O
ATOM 11 C2' A A 4 7.639 8.572 86.937 1.00 26.58 C
ATOM 12 O2' A A 4 6.839 8.259 88.058 1.00 27.01 O
ATOM 13 C1' A A 4 6.790 8.448 85.671 1.00 25.38 C
ATOM 14 N9 A A 4 7.593 8.202 84.472 1.00 23.75 N
ATOM 15 C8 A A 4 7.575 8.914 83.296 1.00 24.24 C
ATOM 16 N7 A A 4 8.405 8.459 82.390 1.00 22.97 N
ATOM 17 C5 A A 4 9.010 7.373 83.005 1.00 22.13 C
ATOM 18 C6 A A 4 9.983 6.456 82.565 1.00 23.97 C
ATOM 19 N6 A A 4 10.542 6.484 81.342 1.00 22.45 N
ATOM 20 N1 A A 4 10.368 5.488 83.431 1.00 23.45 N
ATOM 21 C2 A A 4 9.806 5.454 84.651 1.00 23.51 C
ATOM 22 N3 A A 4 8.884 6.256 85.176 1.00 22.51 N
ATOM 23 C4 A A 4 8.521 7.204 84.292 1.00 23.40 C
ATOM 24 P C A 5 9.724 11.341 88.378 1.00 30.57 P
ATOM 25 OP1 C A 5 9.960 11.486 89.838 1.00 30.39 O
ATOM 26 OP2 C A 5 9.642 12.548 87.525 1.00 28.16 O
ATOM 27 O5' C A 5 10.835 10.385 87.763 1.00 29.48 O
TER
ATOM 1 O3' A B 4 8.353 10.526 88.194 1.00 28.12 O
ATOM 2 P C B 5 9.724 11.341 88.378 1.00 30.57 P
ATOM 3 OP1 C B 5 9.960 11.486 89.838 1.00 30.39 O
ATOM 4 OP2 C B 5 9.642 12.548 87.525 1.00 28.16 O
ATOM 5 O5' C B 5 10.835 10.385 87.763 1.00 29.48 O
ATOM 6 C5' C B 5 11.112 9.118 88.337 1.00 30.15 C
ATOM 7 C4' C B 5 12.089 8.370 87.469 1.00 31.80 C
ATOM 8 O4' C B 5 11.442 7.924 86.244 1.00 31.40 O
ATOM 9 C3' C B 5 13.223 9.226 86.956 1.00 31.62 C
ATOM 10 O3' C B 5 14.205 9.463 87.947 1.00 35.63 O
ATOM 11 C2' C B 5 13.704 8.419 85.758 1.00 30.92 C
ATOM 12 O2' C B 5 14.463 7.277 86.097 1.00 27.09 O
ATOM 13 C1' C B 5 12.366 7.979 85.166 1.00 28.40 C
ATOM 14 N1 C B 5 11.867 8.942 84.173 1.00 25.87 N
ATOM 15 C2 C B 5 12.318 8.830 82.859 1.00 26.02 C
ATOM 16 O2 C B 5 13.134 7.935 82.584 1.00 26.13 O
ATOM 17 N3 C B 5 11.859 9.696 81.925 1.00 24.88 N
ATOM 18 C4 C B 5 10.989 10.648 82.267 1.00 23.87 C
ATOM 19 N4 C B 5 10.550 11.470 81.308 1.00 24.05 N
ATOM 20 C5 C B 5 10.524 10.797 83.607 1.00 23.96 C
ATOM 21 C6 C B 5 10.981 9.926 84.518 1.00 24.45 C
ATOM 22 P A B 6 15.222 10.681 87.750 1.00 37.53 P
ATOM 23 OP1 A B 6 16.098 10.774 88.944 1.00 39.29 O
ATOM 24 OP2 A B 6 14.481 11.882 87.287 1.00 36.44 O
ATOM 25 O5' A B 6 16.101 10.155 86.540 1.00 37.34 O
TER
ATOM 2 P A A 4 4.424 13.117 85.487 1.00 39.12 P
ATOM 3 OP1 A A 4 4.465 13.176 86.974 1.00 39.18 O
ATOM 4 OP2 A A 4 4.361 14.378 84.710 1.00 39.86 O
ATOM 5 O5' A A 4 5.667 12.269 84.962 1.00 37.18 O
ATOM 6 C5' A A 4 6.802 12.015 85.785 1.00 31.28 C
ATOM 7 C4' A A 4 6.674 10.662 86.446 1.00 27.97 C
ATOM 8 O4' A A 4 6.130 9.694 85.505 1.00 26.52 O
ATOM 9 C3' A A 4 7.986 10.050 86.908 1.00 27.14 C
ATOM 10 O3' A A 4 8.353 10.526 88.194 1.00 28.12 O
ATOM 11 C2' A A 4 7.639 8.572 86.937 1.00 26.58 C
ATOM 12 O2' A A 4 6.839 8.259 88.058 1.00 27.01 O
ATOM 13 C1' A A 4 6.790 8.448 85.671 1.00 25.38 C
ATOM 14 N9 A A 4 7.593 8.202 84.472 1.00 23.75 N
ATOM 15 C8 A A 4 7.575 8.914 83.296 1.00 24.24 C
ATOM 16 N7 A A 4 8.405 8.459 82.390 1.00 22.97 N
ATOM 17 C5 A A 4 9.010 7.373 83.005 1.00 22.13 C
ATOM 18 C6 A A 4 9.983 6.456 82.565 1.00 23.97 C
ATOM 19 N6 A A 4 10.542 6.484 81.342 1.00 22.45 N
ATOM 20 N1 A A 4 10.368 5.488 83.431 1.00 23.45 N
ATOM 21 C2 A A 4 9.806 5.454 84.651 1.00 23.51 C
ATOM 22 N3 A A 4 8.884 6.256 85.176 1.00 22.51 N
ATOM 23 C4 A A 4 8.521 7.204 84.292 1.00 23.40 C
ATOM 24 P C A 5 9.724 11.341 88.378 1.00 30.57 P
ATOM 25 OP1 C A 5 9.960 11.486 89.838 1.00 30.39 O
ATOM 26 OP2 C A 5 9.642 12.548 87.525 1.00 28.16 O
ATOM 27 O5' C A 5 10.835 10.385 87.763 1.00 29.48 O
TER
ATOM 1 O3' A B 4 8.353 10.526 88.194 1.00 28.12 O
ATOM 2 P C B 5 9.724 11.341 88.378 1.00 30.57 P
ATOM 3 OP1 C B 5 9.960 11.486 89.838 1.00 30.39 O
ATOM 4 OP2 C B 5 9.642 12.548 87.525 1.00 28.16 O
ATOM 5 O5' C B 5 10.835 10.385 87.763 1.00 29.48 O
ATOM 6 C5' C B 5 11.112 9.118 88.337 1.00 30.15 C
ATOM 7 C4' C B 5 12.089 8.370 87.469 1.00 31.80 C
ATOM 8 O4' C B 5 11.442 7.924 86.244 1.00 31.40 O
ATOM 9 C3' C B 5 13.223 9.226 86.956 1.00 31.62 C
ATOM 10 O3' C B 5 14.205 9.463 87.947 1.00 35.63 O
ATOM 11 C2' C B 5 13.704 8.419 85.758 1.00 30.92 C
ATOM 12 O2' C B 5 14.463 7.277 86.097 1.00 27.09 O
ATOM 13 C1' C B 5 12.366 7.979 85.166 1.00 28.40 C
ATOM 14 N1 C B 5 11.867 8.942 84.173 1.00 25.87 N
ATOM 15 C2 C B 5 12.318 8.830 82.859 1.00 26.02 C
ATOM 16 O2 C B 5 13.134 7.935 82.584 1.00 26.13 O
ATOM 17 N3 C B 5 11.859 9.696 81.925 1.00 24.88 N
ATOM 18 C4 C B 5 10.989 10.648 82.267 1.00 23.87 C
ATOM 19 N4 C B 5 10.550 11.470 81.308 1.00 24.05 N
ATOM 20 C5 C B 5 10.524 10.797 83.607 1.00 23.96 C
ATOM 21 C6 C B 5 10.981 9.926 84.518 1.00 24.45 C
ATOM 22 P A B 6 15.222 10.681 87.750 1.00 37.53 P
ATOM 23 OP1 A B 6 16.098 10.774 88.944 1.00 39.29 O
ATOM 24 OP2 A B 6 14.481 11.882 87.287 1.00 36.44 O
ATOM 25 O5' A B 6 16.101 10.155 86.540 1.00 37.34 O
TER
Atoms:
OP1: (4.465,13.176,86.974)
OP2: (4.361,14.378,84.710)
C3': (7.986,10.050,86.908)
C1': (6.790,8.448,85.671)
C5': (6.802,12.015,85.785)
O4': (6.130,9.694,85.505)
C8: (7.575,8.914,83.296)
O2': (6.839,8.259,88.058)
C6: (9.983,6.456,82.565)
C5: (9.010,7.373,83.005)
C4: (8.521,7.204,84.292)
P: (4.424,13.117,85.487)
C4': (6.674,10.662,86.446)
C2': (7.639,8.572,86.937)
C2: (9.806,5.454,84.651)
N1: (10.368,5.488,83.431)
N3: (8.884,6.256,85.176)
N6: (10.542,6.484,81.342)
N7: (8.405,8.459,82.390)
N9: (7.593,8.202,84.472)
O5': (5.667,12.269,84.962)
O3': (8.353,10.526,88.194)
OP2: (4.361,14.378,84.710)
C3': (7.986,10.050,86.908)
C1': (6.790,8.448,85.671)
C5': (6.802,12.015,85.785)
O4': (6.130,9.694,85.505)
C8: (7.575,8.914,83.296)
O2': (6.839,8.259,88.058)
C6: (9.983,6.456,82.565)
C5: (9.010,7.373,83.005)
C4: (8.521,7.204,84.292)
P: (4.424,13.117,85.487)
C4': (6.674,10.662,86.446)
C2': (7.639,8.572,86.937)
C2: (9.806,5.454,84.651)
N1: (10.368,5.488,83.431)
N3: (8.884,6.256,85.176)
N6: (10.542,6.484,81.342)
N7: (8.405,8.459,82.390)
N9: (7.593,8.202,84.472)
O5': (5.667,12.269,84.962)
O3': (8.353,10.526,88.194)
C2: (12.318,8.830,82.859)
OP1: (9.960,11.486,89.838)
OP2: (9.642,12.548,87.525)
C4: (10.989,10.648,82.267)
O5': (10.835,10.385,87.763)
C3': (13.223,9.226,86.956)
C1': (12.366,7.979,85.166)
O4': (11.442,7.924,86.244)
C5': (11.112,9.118,88.337)
P: (9.724,11.341,88.378)
O2: (13.134,7.935,82.584)
C4': (12.089,8.370,87.469)
C2': (13.704,8.419,85.758)
O2': (14.463,7.277,86.097)
N1: (11.867,8.942,84.173)
N3: (11.859,9.696,81.925)
N4: (10.550,11.470,81.308)
C6: (10.981,9.926,84.518)
C5: (10.524,10.797,83.607)
O3': (14.205,9.463,87.947)
OP1: (9.960,11.486,89.838)
OP2: (9.642,12.548,87.525)
C4: (10.989,10.648,82.267)
O5': (10.835,10.385,87.763)
C3': (13.223,9.226,86.956)
C1': (12.366,7.979,85.166)
O4': (11.442,7.924,86.244)
C5': (11.112,9.118,88.337)
P: (9.724,11.341,88.378)
O2: (13.134,7.935,82.584)
C4': (12.089,8.370,87.469)
C2': (13.704,8.419,85.758)
O2': (14.463,7.277,86.097)
N1: (11.867,8.942,84.173)
N3: (11.859,9.696,81.925)
N4: (10.550,11.470,81.308)
C6: (10.981,9.926,84.518)
C5: (10.524,10.797,83.607)
O3': (14.205,9.463,87.947)
Image (generated by PyMOL):