Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:436:4105
Extra
PDB:
ATOM 1 O3' G A 35 59.433 -6.624 132.991 1.00 48.49 O
ATOM 2 P A A 36 59.132 -7.391 134.381 1.00 57.33 P
ATOM 3 OP1 A A 36 60.422 -7.769 134.968 1.00 57.80 O
ATOM 4 OP2 A A 36 58.152 -8.466 134.112 1.00 56.99 O
ATOM 5 O5' A A 36 58.459 -6.243 135.262 1.00 57.86 O
ATOM 6 C5' A A 36 57.163 -5.755 134.952 1.00 57.59 C
ATOM 7 C4' A A 36 56.363 -5.506 136.199 1.00 58.25 C
ATOM 8 O4' A A 36 55.017 -5.125 135.834 1.00 57.96 O
ATOM 9 C3' A A 36 56.236 -6.690 137.136 1.00 58.67 C
ATOM 10 O3' A A 36 56.228 -6.225 138.465 1.00 59.51 O
ATOM 11 C2' A A 36 54.867 -7.249 136.805 1.00 58.31 C
ATOM 12 O2' A A 36 54.253 -7.920 137.871 1.00 58.83 O
ATOM 13 C1' A A 36 54.090 -6.003 136.424 1.00 58.15 C
ATOM 14 N9 A A 36 53.034 -6.245 135.439 1.00 57.48 N
ATOM 15 C8 A A 36 51.702 -5.952 135.507 1.00 57.48 C
ATOM 16 N7 A A 36 51.034 -6.267 134.426 1.00 56.80 N
ATOM 17 C5 A A 36 51.980 -6.817 133.582 1.00 56.33 C
ATOM 18 C6 A A 36 51.913 -7.344 132.282 1.00 55.57 C
ATOM 19 N6 A A 36 50.808 -7.418 131.571 1.00 55.13 N
ATOM 20 N1 A A 36 53.026 -7.803 131.704 1.00 55.28 N
ATOM 21 C2 A A 36 54.149 -7.712 132.415 1.00 55.75 C
ATOM 22 N3 A A 36 54.364 -7.239 133.654 1.00 56.48 N
ATOM 23 C4 A A 36 53.214 -6.804 134.195 1.00 56.74 C
ATOM 24 P U A 37 57.261 -6.821 139.535 1.00 54.86 P
ATOM 25 OP1 U A 37 57.449 -8.254 139.202 1.00 54.54 O
ATOM 26 OP2 U A 37 56.749 -6.447 140.892 1.00 55.69 O
ATOM 27 O5' U A 37 58.597 -6.012 139.223 1.00 54.90 O
TER
ATOM 1 O3' A B 104 46.709 0.898 133.263 1.00 49.92 O
ATOM 2 P C B 105 45.192 1.115 133.750 1.00 50.30 P
ATOM 3 OP1 C B 105 44.286 0.466 132.764 1.00 49.65 O
ATOM 4 OP2 C B 105 45.026 2.590 134.015 1.00 50.70 O
ATOM 5 O5' C B 105 45.178 0.310 135.119 1.00 50.98 O
ATOM 6 C5' C B 105 44.477 0.824 136.242 1.00 51.74 C
ATOM 7 C4' C B 105 45.121 0.422 137.541 1.00 52.46 C
ATOM 8 O4' C B 105 45.425 -1.005 137.502 1.00 52.21 O
ATOM 9 C3' C B 105 46.431 1.121 137.854 1.00 52.75 C
ATOM 10 O3' C B 105 46.588 1.199 139.250 1.00 53.64 O
ATOM 11 C2' C B 105 47.448 0.151 137.308 1.00 52.26 C
ATOM 12 O2' C B 105 48.708 0.273 137.872 1.00 52.64 O
ATOM 13 C1' C B 105 46.815 -1.194 137.650 1.00 52.27 C
ATOM 14 N1 C B 105 47.235 -2.287 136.749 1.00 51.57 N
ATOM 15 C2 C B 105 48.554 -2.743 136.812 1.00 51.56 C
ATOM 16 O2 C B 105 49.342 -2.273 137.620 1.00 52.12 O
ATOM 17 N3 C B 105 48.972 -3.700 135.973 1.00 50.95 N
ATOM 18 C4 C B 105 48.119 -4.209 135.093 1.00 50.36 C
ATOM 19 N4 C B 105 48.579 -5.160 134.301 1.00 49.82 N
ATOM 20 C5 C B 105 46.783 -3.762 135.008 1.00 50.36 C
ATOM 21 C6 C B 105 46.382 -2.807 135.842 1.00 50.96 C
ATOM 22 P G B 106 46.570 2.624 139.976 1.00 55.93 P
ATOM 23 OP1 G B 106 46.772 3.643 138.923 1.00 55.45 O
ATOM 24 OP2 G B 106 47.540 2.550 141.130 1.00 56.66 O
ATOM 25 O5' G B 106 45.087 2.727 140.518 1.00 56.31 O
TER
ATOM 2 P A A 36 59.132 -7.391 134.381 1.00 57.33 P
ATOM 3 OP1 A A 36 60.422 -7.769 134.968 1.00 57.80 O
ATOM 4 OP2 A A 36 58.152 -8.466 134.112 1.00 56.99 O
ATOM 5 O5' A A 36 58.459 -6.243 135.262 1.00 57.86 O
ATOM 6 C5' A A 36 57.163 -5.755 134.952 1.00 57.59 C
ATOM 7 C4' A A 36 56.363 -5.506 136.199 1.00 58.25 C
ATOM 8 O4' A A 36 55.017 -5.125 135.834 1.00 57.96 O
ATOM 9 C3' A A 36 56.236 -6.690 137.136 1.00 58.67 C
ATOM 10 O3' A A 36 56.228 -6.225 138.465 1.00 59.51 O
ATOM 11 C2' A A 36 54.867 -7.249 136.805 1.00 58.31 C
ATOM 12 O2' A A 36 54.253 -7.920 137.871 1.00 58.83 O
ATOM 13 C1' A A 36 54.090 -6.003 136.424 1.00 58.15 C
ATOM 14 N9 A A 36 53.034 -6.245 135.439 1.00 57.48 N
ATOM 15 C8 A A 36 51.702 -5.952 135.507 1.00 57.48 C
ATOM 16 N7 A A 36 51.034 -6.267 134.426 1.00 56.80 N
ATOM 17 C5 A A 36 51.980 -6.817 133.582 1.00 56.33 C
ATOM 18 C6 A A 36 51.913 -7.344 132.282 1.00 55.57 C
ATOM 19 N6 A A 36 50.808 -7.418 131.571 1.00 55.13 N
ATOM 20 N1 A A 36 53.026 -7.803 131.704 1.00 55.28 N
ATOM 21 C2 A A 36 54.149 -7.712 132.415 1.00 55.75 C
ATOM 22 N3 A A 36 54.364 -7.239 133.654 1.00 56.48 N
ATOM 23 C4 A A 36 53.214 -6.804 134.195 1.00 56.74 C
ATOM 24 P U A 37 57.261 -6.821 139.535 1.00 54.86 P
ATOM 25 OP1 U A 37 57.449 -8.254 139.202 1.00 54.54 O
ATOM 26 OP2 U A 37 56.749 -6.447 140.892 1.00 55.69 O
ATOM 27 O5' U A 37 58.597 -6.012 139.223 1.00 54.90 O
TER
ATOM 1 O3' A B 104 46.709 0.898 133.263 1.00 49.92 O
ATOM 2 P C B 105 45.192 1.115 133.750 1.00 50.30 P
ATOM 3 OP1 C B 105 44.286 0.466 132.764 1.00 49.65 O
ATOM 4 OP2 C B 105 45.026 2.590 134.015 1.00 50.70 O
ATOM 5 O5' C B 105 45.178 0.310 135.119 1.00 50.98 O
ATOM 6 C5' C B 105 44.477 0.824 136.242 1.00 51.74 C
ATOM 7 C4' C B 105 45.121 0.422 137.541 1.00 52.46 C
ATOM 8 O4' C B 105 45.425 -1.005 137.502 1.00 52.21 O
ATOM 9 C3' C B 105 46.431 1.121 137.854 1.00 52.75 C
ATOM 10 O3' C B 105 46.588 1.199 139.250 1.00 53.64 O
ATOM 11 C2' C B 105 47.448 0.151 137.308 1.00 52.26 C
ATOM 12 O2' C B 105 48.708 0.273 137.872 1.00 52.64 O
ATOM 13 C1' C B 105 46.815 -1.194 137.650 1.00 52.27 C
ATOM 14 N1 C B 105 47.235 -2.287 136.749 1.00 51.57 N
ATOM 15 C2 C B 105 48.554 -2.743 136.812 1.00 51.56 C
ATOM 16 O2 C B 105 49.342 -2.273 137.620 1.00 52.12 O
ATOM 17 N3 C B 105 48.972 -3.700 135.973 1.00 50.95 N
ATOM 18 C4 C B 105 48.119 -4.209 135.093 1.00 50.36 C
ATOM 19 N4 C B 105 48.579 -5.160 134.301 1.00 49.82 N
ATOM 20 C5 C B 105 46.783 -3.762 135.008 1.00 50.36 C
ATOM 21 C6 C B 105 46.382 -2.807 135.842 1.00 50.96 C
ATOM 22 P G B 106 46.570 2.624 139.976 1.00 55.93 P
ATOM 23 OP1 G B 106 46.772 3.643 138.923 1.00 55.45 O
ATOM 24 OP2 G B 106 47.540 2.550 141.130 1.00 56.66 O
ATOM 25 O5' G B 106 45.087 2.727 140.518 1.00 56.31 O
TER
Atoms:
OP1: (60.422,-7.769,134.968)
OP2: (58.152,-8.466,134.112)
C3': (56.236,-6.690,137.136)
C1': (54.090,-6.003,136.424)
C5': (57.163,-5.755,134.952)
O4': (55.017,-5.125,135.834)
C8: (51.702,-5.952,135.507)
O2': (54.253,-7.920,137.871)
C6: (51.913,-7.344,132.282)
C5: (51.980,-6.817,133.582)
C4: (53.214,-6.804,134.195)
P: (59.132,-7.391,134.381)
C4': (56.363,-5.506,136.199)
C2': (54.867,-7.249,136.805)
C2: (54.149,-7.712,132.415)
N1: (53.026,-7.803,131.704)
N3: (54.364,-7.239,133.654)
N6: (50.808,-7.418,131.571)
N7: (51.034,-6.267,134.426)
N9: (53.034,-6.245,135.439)
O5': (58.459,-6.243,135.262)
O3': (56.228,-6.225,138.465)
OP2: (58.152,-8.466,134.112)
C3': (56.236,-6.690,137.136)
C1': (54.090,-6.003,136.424)
C5': (57.163,-5.755,134.952)
O4': (55.017,-5.125,135.834)
C8: (51.702,-5.952,135.507)
O2': (54.253,-7.920,137.871)
C6: (51.913,-7.344,132.282)
C5: (51.980,-6.817,133.582)
C4: (53.214,-6.804,134.195)
P: (59.132,-7.391,134.381)
C4': (56.363,-5.506,136.199)
C2': (54.867,-7.249,136.805)
C2: (54.149,-7.712,132.415)
N1: (53.026,-7.803,131.704)
N3: (54.364,-7.239,133.654)
N6: (50.808,-7.418,131.571)
N7: (51.034,-6.267,134.426)
N9: (53.034,-6.245,135.439)
O5': (58.459,-6.243,135.262)
O3': (56.228,-6.225,138.465)
C2: (48.554,-2.743,136.812)
OP1: (44.286,0.466,132.764)
OP2: (45.026,2.590,134.015)
C4: (48.119,-4.209,135.093)
O5': (45.178,0.310,135.119)
C3': (46.431,1.121,137.854)
C1': (46.815,-1.194,137.650)
O4': (45.425,-1.005,137.502)
C5': (44.477,0.824,136.242)
P: (45.192,1.115,133.750)
O2: (49.342,-2.273,137.620)
C4': (45.121,0.422,137.541)
C2': (47.448,0.151,137.308)
O2': (48.708,0.273,137.872)
N1: (47.235,-2.287,136.749)
N3: (48.972,-3.700,135.973)
N4: (48.579,-5.160,134.301)
C6: (46.382,-2.807,135.842)
C5: (46.783,-3.762,135.008)
O3': (46.588,1.199,139.250)
OP1: (44.286,0.466,132.764)
OP2: (45.026,2.590,134.015)
C4: (48.119,-4.209,135.093)
O5': (45.178,0.310,135.119)
C3': (46.431,1.121,137.854)
C1': (46.815,-1.194,137.650)
O4': (45.425,-1.005,137.502)
C5': (44.477,0.824,136.242)
P: (45.192,1.115,133.750)
O2: (49.342,-2.273,137.620)
C4': (45.121,0.422,137.541)
C2': (47.448,0.151,137.308)
O2': (48.708,0.273,137.872)
N1: (47.235,-2.287,136.749)
N3: (48.972,-3.700,135.973)
N4: (48.579,-5.160,134.301)
C6: (46.382,-2.807,135.842)
C5: (46.783,-3.762,135.008)
O3': (46.588,1.199,139.250)
Image (generated by PyMOL):