Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1516:1517
Extra
PDB:
ATOM 1 O3' U A 515 74.215 -11.455 -10.612 1.00 65.49 O
ATOM 2 P A A 516 74.454 -12.003 -9.134 1.00 59.79 P
ATOM 3 OP1 A A 516 75.249 -10.954 -8.418 1.00 59.48 O
ATOM 4 OP2 A A 516 75.019 -13.389 -9.280 1.00 59.99 O
ATOM 5 O5' A A 516 72.984 -12.082 -8.510 1.00 59.38 O
ATOM 6 C5' A A 516 72.097 -10.976 -8.542 1.00 59.26 C
ATOM 7 C4' A A 516 70.680 -11.438 -8.438 1.00 59.13 C
ATOM 8 O4' A A 516 70.429 -12.414 -9.472 1.00 59.63 O
ATOM 9 C3' A A 516 70.322 -12.178 -7.161 1.00 58.58 C
ATOM 10 O3' A A 516 70.078 -11.315 -6.072 1.00 58.04 O
ATOM 11 C2' A A 516 69.109 -13.004 -7.578 1.00 58.73 C
ATOM 12 O2' A A 516 67.924 -12.220 -7.588 1.00 58.61 O
ATOM 13 C1' A A 516 69.466 -13.349 -9.023 1.00 59.42 C
ATOM 14 N9 A A 516 70.004 -14.729 -9.160 1.00 59.61 N
ATOM 15 C8 A A 516 71.240 -15.200 -9.549 1.00 59.92 C
ATOM 16 N7 A A 516 71.324 -16.514 -9.579 1.00 60.05 N
ATOM 17 C5 A A 516 70.058 -16.930 -9.191 1.00 59.81 C
ATOM 18 C6 A A 516 69.500 -18.190 -9.026 1.00 59.81 C
ATOM 19 N6 A A 516 70.153 -19.330 -9.218 1.00 60.06 N
ATOM 20 N1 A A 516 68.214 -18.226 -8.637 1.00 59.55 N
ATOM 21 C2 A A 516 67.528 -17.100 -8.434 1.00 59.31 C
ATOM 22 N3 A A 516 67.937 -15.851 -8.548 1.00 59.28 N
ATOM 23 C4 A A 516 69.232 -15.850 -8.935 1.00 59.54 C
ATOM 24 P C A 517 70.576 -11.705 -4.592 1.00 54.78 P
ATOM 25 OP1 C A 517 70.136 -10.606 -3.681 1.00 54.31 O
ATOM 26 OP2 C A 517 72.032 -12.016 -4.670 1.00 54.95 O
ATOM 27 O5' C A 517 69.747 -13.046 -4.303 1.00 54.67 O
TER
ATOM 1 O3' A B 516 70.078 -11.315 -6.072 1.00 58.04 O
ATOM 2 P C B 517 70.576 -11.705 -4.592 1.00 54.78 P
ATOM 3 OP1 C B 517 70.136 -10.606 -3.681 1.00 54.31 O
ATOM 4 OP2 C B 517 72.032 -12.016 -4.670 1.00 54.95 O
ATOM 5 O5' C B 517 69.747 -13.046 -4.303 1.00 54.67 O
ATOM 6 C5' C B 517 68.363 -13.030 -3.959 1.00 54.43 C
ATOM 7 C4' C B 517 67.816 -14.433 -3.909 1.00 54.46 C
ATOM 8 O4' C B 517 68.105 -15.094 -5.161 1.00 55.06 O
ATOM 9 C3' C B 517 68.446 -15.357 -2.878 1.00 54.14 C
ATOM 10 O3' C B 517 67.925 -15.198 -1.583 1.00 53.56 O
ATOM 11 C2' C B 517 68.197 -16.735 -3.449 1.00 54.47 C
ATOM 12 O2' C B 517 66.880 -17.156 -3.166 1.00 54.30 O
ATOM 13 C1' C B 517 68.313 -16.469 -4.942 1.00 55.09 C
ATOM 14 N1 C B 517 69.629 -16.823 -5.466 1.00 55.44 N
ATOM 15 C2 C B 517 70.007 -18.186 -5.554 1.00 55.63 C
ATOM 16 O2 C B 517 69.239 -19.072 -5.167 1.00 55.49 O
ATOM 17 N3 C B 517 71.209 -18.526 -6.059 1.00 55.97 N
ATOM 18 C4 C B 517 71.973 -17.526 -6.459 1.00 56.11 C
ATOM 19 N4 C B 517 73.129 -17.872 -6.973 1.00 56.47 N
ATOM 20 C5 C B 517 71.624 -16.146 -6.391 1.00 55.94 C
ATOM 21 C6 C B 517 70.437 -15.817 -5.892 1.00 55.60 C
ATOM 22 P U B 518 68.918 -14.955 -0.360 1.00 48.17 P
ATOM 23 OP1 U B 518 68.125 -14.325 0.726 1.00 47.64 O
ATOM 24 OP2 U B 518 70.085 -14.226 -0.925 1.00 48.43 O
ATOM 25 O5' U B 518 69.338 -16.432 0.065 1.00 48.14 O
TER
ATOM 2 P A A 516 74.454 -12.003 -9.134 1.00 59.79 P
ATOM 3 OP1 A A 516 75.249 -10.954 -8.418 1.00 59.48 O
ATOM 4 OP2 A A 516 75.019 -13.389 -9.280 1.00 59.99 O
ATOM 5 O5' A A 516 72.984 -12.082 -8.510 1.00 59.38 O
ATOM 6 C5' A A 516 72.097 -10.976 -8.542 1.00 59.26 C
ATOM 7 C4' A A 516 70.680 -11.438 -8.438 1.00 59.13 C
ATOM 8 O4' A A 516 70.429 -12.414 -9.472 1.00 59.63 O
ATOM 9 C3' A A 516 70.322 -12.178 -7.161 1.00 58.58 C
ATOM 10 O3' A A 516 70.078 -11.315 -6.072 1.00 58.04 O
ATOM 11 C2' A A 516 69.109 -13.004 -7.578 1.00 58.73 C
ATOM 12 O2' A A 516 67.924 -12.220 -7.588 1.00 58.61 O
ATOM 13 C1' A A 516 69.466 -13.349 -9.023 1.00 59.42 C
ATOM 14 N9 A A 516 70.004 -14.729 -9.160 1.00 59.61 N
ATOM 15 C8 A A 516 71.240 -15.200 -9.549 1.00 59.92 C
ATOM 16 N7 A A 516 71.324 -16.514 -9.579 1.00 60.05 N
ATOM 17 C5 A A 516 70.058 -16.930 -9.191 1.00 59.81 C
ATOM 18 C6 A A 516 69.500 -18.190 -9.026 1.00 59.81 C
ATOM 19 N6 A A 516 70.153 -19.330 -9.218 1.00 60.06 N
ATOM 20 N1 A A 516 68.214 -18.226 -8.637 1.00 59.55 N
ATOM 21 C2 A A 516 67.528 -17.100 -8.434 1.00 59.31 C
ATOM 22 N3 A A 516 67.937 -15.851 -8.548 1.00 59.28 N
ATOM 23 C4 A A 516 69.232 -15.850 -8.935 1.00 59.54 C
ATOM 24 P C A 517 70.576 -11.705 -4.592 1.00 54.78 P
ATOM 25 OP1 C A 517 70.136 -10.606 -3.681 1.00 54.31 O
ATOM 26 OP2 C A 517 72.032 -12.016 -4.670 1.00 54.95 O
ATOM 27 O5' C A 517 69.747 -13.046 -4.303 1.00 54.67 O
TER
ATOM 1 O3' A B 516 70.078 -11.315 -6.072 1.00 58.04 O
ATOM 2 P C B 517 70.576 -11.705 -4.592 1.00 54.78 P
ATOM 3 OP1 C B 517 70.136 -10.606 -3.681 1.00 54.31 O
ATOM 4 OP2 C B 517 72.032 -12.016 -4.670 1.00 54.95 O
ATOM 5 O5' C B 517 69.747 -13.046 -4.303 1.00 54.67 O
ATOM 6 C5' C B 517 68.363 -13.030 -3.959 1.00 54.43 C
ATOM 7 C4' C B 517 67.816 -14.433 -3.909 1.00 54.46 C
ATOM 8 O4' C B 517 68.105 -15.094 -5.161 1.00 55.06 O
ATOM 9 C3' C B 517 68.446 -15.357 -2.878 1.00 54.14 C
ATOM 10 O3' C B 517 67.925 -15.198 -1.583 1.00 53.56 O
ATOM 11 C2' C B 517 68.197 -16.735 -3.449 1.00 54.47 C
ATOM 12 O2' C B 517 66.880 -17.156 -3.166 1.00 54.30 O
ATOM 13 C1' C B 517 68.313 -16.469 -4.942 1.00 55.09 C
ATOM 14 N1 C B 517 69.629 -16.823 -5.466 1.00 55.44 N
ATOM 15 C2 C B 517 70.007 -18.186 -5.554 1.00 55.63 C
ATOM 16 O2 C B 517 69.239 -19.072 -5.167 1.00 55.49 O
ATOM 17 N3 C B 517 71.209 -18.526 -6.059 1.00 55.97 N
ATOM 18 C4 C B 517 71.973 -17.526 -6.459 1.00 56.11 C
ATOM 19 N4 C B 517 73.129 -17.872 -6.973 1.00 56.47 N
ATOM 20 C5 C B 517 71.624 -16.146 -6.391 1.00 55.94 C
ATOM 21 C6 C B 517 70.437 -15.817 -5.892 1.00 55.60 C
ATOM 22 P U B 518 68.918 -14.955 -0.360 1.00 48.17 P
ATOM 23 OP1 U B 518 68.125 -14.325 0.726 1.00 47.64 O
ATOM 24 OP2 U B 518 70.085 -14.226 -0.925 1.00 48.43 O
ATOM 25 O5' U B 518 69.338 -16.432 0.065 1.00 48.14 O
TER
Atoms:
OP1: (75.249,-10.954,-8.418)
OP2: (75.019,-13.389,-9.280)
C3': (70.322,-12.178,-7.161)
C1': (69.466,-13.349,-9.023)
C5': (72.097,-10.976,-8.542)
O4': (70.429,-12.414,-9.472)
C8: (71.240,-15.200,-9.549)
O2': (67.924,-12.220,-7.588)
C6: (69.500,-18.190,-9.026)
C5: (70.058,-16.930,-9.191)
C4: (69.232,-15.850,-8.935)
P: (74.454,-12.003,-9.134)
C4': (70.680,-11.438,-8.438)
C2': (69.109,-13.004,-7.578)
C2: (67.528,-17.100,-8.434)
N1: (68.214,-18.226,-8.637)
N3: (67.937,-15.851,-8.548)
N6: (70.153,-19.330,-9.218)
N7: (71.324,-16.514,-9.579)
N9: (70.004,-14.729,-9.160)
O5': (72.984,-12.082,-8.510)
O3': (70.078,-11.315,-6.072)
OP2: (75.019,-13.389,-9.280)
C3': (70.322,-12.178,-7.161)
C1': (69.466,-13.349,-9.023)
C5': (72.097,-10.976,-8.542)
O4': (70.429,-12.414,-9.472)
C8: (71.240,-15.200,-9.549)
O2': (67.924,-12.220,-7.588)
C6: (69.500,-18.190,-9.026)
C5: (70.058,-16.930,-9.191)
C4: (69.232,-15.850,-8.935)
P: (74.454,-12.003,-9.134)
C4': (70.680,-11.438,-8.438)
C2': (69.109,-13.004,-7.578)
C2: (67.528,-17.100,-8.434)
N1: (68.214,-18.226,-8.637)
N3: (67.937,-15.851,-8.548)
N6: (70.153,-19.330,-9.218)
N7: (71.324,-16.514,-9.579)
N9: (70.004,-14.729,-9.160)
O5': (72.984,-12.082,-8.510)
O3': (70.078,-11.315,-6.072)
C2: (70.007,-18.186,-5.554)
OP1: (70.136,-10.606,-3.681)
OP2: (72.032,-12.016,-4.670)
C4: (71.973,-17.526,-6.459)
O5': (69.747,-13.046,-4.303)
C3': (68.446,-15.357,-2.878)
C1': (68.313,-16.469,-4.942)
O4': (68.105,-15.094,-5.161)
C5': (68.363,-13.030,-3.959)
P: (70.576,-11.705,-4.592)
O2: (69.239,-19.072,-5.167)
C4': (67.816,-14.433,-3.909)
C2': (68.197,-16.735,-3.449)
O2': (66.880,-17.156,-3.166)
N1: (69.629,-16.823,-5.466)
N3: (71.209,-18.526,-6.059)
N4: (73.129,-17.872,-6.973)
C6: (70.437,-15.817,-5.892)
C5: (71.624,-16.146,-6.391)
O3': (67.925,-15.198,-1.583)
OP1: (70.136,-10.606,-3.681)
OP2: (72.032,-12.016,-4.670)
C4: (71.973,-17.526,-6.459)
O5': (69.747,-13.046,-4.303)
C3': (68.446,-15.357,-2.878)
C1': (68.313,-16.469,-4.942)
O4': (68.105,-15.094,-5.161)
C5': (68.363,-13.030,-3.959)
P: (70.576,-11.705,-4.592)
O2: (69.239,-19.072,-5.167)
C4': (67.816,-14.433,-3.909)
C2': (68.197,-16.735,-3.449)
O2': (66.880,-17.156,-3.166)
N1: (69.629,-16.823,-5.466)
N3: (71.209,-18.526,-6.059)
N4: (73.129,-17.872,-6.973)
C6: (70.437,-15.817,-5.892)
C5: (71.624,-16.146,-6.391)
O3': (67.925,-15.198,-1.583)
Image (generated by PyMOL):