Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0366:0398
Extra
PDB:
ATOM 1 O3' C A 365 92.498 102.340 5.818 1.00 56.06 O
ATOM 2 P A A 366 92.624 101.797 7.327 1.00 57.89 P
ATOM 3 OP1 A A 366 93.355 102.840 8.090 1.00 57.03 O
ATOM 4 OP2 A A 366 93.147 100.404 7.302 1.00 56.60 O
ATOM 5 O5' A A 366 91.117 101.749 7.847 1.00 55.32 O
ATOM 6 C5' A A 366 90.329 102.951 7.957 1.00 53.62 C
ATOM 7 C4' A A 366 88.901 102.614 8.319 1.00 53.39 C
ATOM 8 O4' A A 366 88.281 101.873 7.238 1.00 54.95 O
ATOM 9 C3' A A 366 88.714 101.721 9.534 1.00 52.69 C
ATOM 10 O3' A A 366 88.779 102.476 10.737 1.00 51.18 O
ATOM 11 C2' A A 366 87.332 101.125 9.295 1.00 53.75 C
ATOM 12 O2' A A 366 86.269 101.976 9.675 1.00 55.25 O
ATOM 13 C1' A A 366 87.331 100.964 7.772 1.00 55.25 C
ATOM 14 N9 A A 366 87.666 99.609 7.328 1.00 56.08 N
ATOM 15 C8 A A 366 88.903 99.036 7.129 1.00 55.77 C
ATOM 16 N7 A A 366 88.849 97.781 6.753 1.00 55.08 N
ATOM 17 C5 A A 366 87.488 97.509 6.696 1.00 55.70 C
ATOM 18 C6 A A 366 86.765 96.345 6.373 1.00 55.85 C
ATOM 19 N6 A A 366 87.334 95.183 6.047 1.00 55.80 N
ATOM 20 N1 A A 366 85.416 96.415 6.405 1.00 56.84 N
ATOM 21 C2 A A 366 84.841 97.574 6.752 1.00 56.54 C
ATOM 22 N3 A A 366 85.409 98.728 7.085 1.00 56.17 N
ATOM 23 C4 A A 366 86.749 98.628 7.037 1.00 55.93 C
ATOM 24 P G A 367 89.228 101.763 12.105 1.00 50.92 P
ATOM 25 OP1 G A 367 90.517 101.059 11.870 1.00 47.23 O
ATOM 26 OP2 G A 367 88.051 101.007 12.622 1.00 50.65 O
ATOM 27 O5' G A 367 89.503 102.978 13.093 1.00 48.35 O
TER
ATOM 1 O3' U B 397 92.664 93.242 9.127 1.00 61.17 O
ATOM 2 P A B 398 92.537 92.750 7.609 1.00 60.67 P
ATOM 3 OP1 A B 398 93.608 91.747 7.338 1.00 60.95 O
ATOM 4 OP2 A B 398 92.416 93.949 6.742 1.00 60.94 O
ATOM 5 O5' A B 398 91.129 92.015 7.600 1.00 60.69 O
ATOM 6 C5' A B 398 90.929 90.809 8.347 1.00 61.04 C
ATOM 7 C4' A B 398 89.463 90.477 8.403 1.00 62.73 C
ATOM 8 O4' A B 398 88.798 91.397 9.315 1.00 61.88 O
ATOM 9 C3' A B 398 88.721 90.578 7.072 1.00 63.21 C
ATOM 10 O3' A B 398 87.734 89.555 6.980 1.00 66.22 O
ATOM 11 C2' A B 398 88.054 91.948 7.172 1.00 61.82 C
ATOM 12 O2' A B 398 86.885 92.076 6.390 1.00 60.64 O
ATOM 13 C1' A B 398 87.706 91.999 8.656 1.00 62.10 C
ATOM 14 N9 A B 398 87.519 93.355 9.176 1.00 63.30 N
ATOM 15 C8 A B 398 88.468 94.303 9.484 1.00 63.09 C
ATOM 16 N7 A B 398 87.963 95.437 9.907 1.00 62.98 N
ATOM 17 C5 A B 398 86.590 95.222 9.881 1.00 63.54 C
ATOM 18 C6 A B 398 85.493 96.045 10.204 1.00 64.81 C
ATOM 19 N6 A B 398 85.613 97.306 10.635 1.00 65.76 N
ATOM 20 N1 A B 398 84.252 95.521 10.067 1.00 64.74 N
ATOM 21 C2 A B 398 84.133 94.260 9.634 1.00 63.75 C
ATOM 22 N3 A B 398 85.084 93.391 9.297 1.00 63.15 N
ATOM 23 C4 A B 398 86.304 93.941 9.443 1.00 63.17 C
ATOM 24 P A B 399 87.888 88.393 5.877 1.00 67.36 P
ATOM 25 OP1 A B 399 88.359 88.996 4.599 1.00 67.76 O
ATOM 26 OP2 A B 399 86.632 87.600 5.888 1.00 66.78 O
ATOM 27 O5' A B 399 89.068 87.491 6.450 1.00 67.64 O
TER
ATOM 2 P A A 366 92.624 101.797 7.327 1.00 57.89 P
ATOM 3 OP1 A A 366 93.355 102.840 8.090 1.00 57.03 O
ATOM 4 OP2 A A 366 93.147 100.404 7.302 1.00 56.60 O
ATOM 5 O5' A A 366 91.117 101.749 7.847 1.00 55.32 O
ATOM 6 C5' A A 366 90.329 102.951 7.957 1.00 53.62 C
ATOM 7 C4' A A 366 88.901 102.614 8.319 1.00 53.39 C
ATOM 8 O4' A A 366 88.281 101.873 7.238 1.00 54.95 O
ATOM 9 C3' A A 366 88.714 101.721 9.534 1.00 52.69 C
ATOM 10 O3' A A 366 88.779 102.476 10.737 1.00 51.18 O
ATOM 11 C2' A A 366 87.332 101.125 9.295 1.00 53.75 C
ATOM 12 O2' A A 366 86.269 101.976 9.675 1.00 55.25 O
ATOM 13 C1' A A 366 87.331 100.964 7.772 1.00 55.25 C
ATOM 14 N9 A A 366 87.666 99.609 7.328 1.00 56.08 N
ATOM 15 C8 A A 366 88.903 99.036 7.129 1.00 55.77 C
ATOM 16 N7 A A 366 88.849 97.781 6.753 1.00 55.08 N
ATOM 17 C5 A A 366 87.488 97.509 6.696 1.00 55.70 C
ATOM 18 C6 A A 366 86.765 96.345 6.373 1.00 55.85 C
ATOM 19 N6 A A 366 87.334 95.183 6.047 1.00 55.80 N
ATOM 20 N1 A A 366 85.416 96.415 6.405 1.00 56.84 N
ATOM 21 C2 A A 366 84.841 97.574 6.752 1.00 56.54 C
ATOM 22 N3 A A 366 85.409 98.728 7.085 1.00 56.17 N
ATOM 23 C4 A A 366 86.749 98.628 7.037 1.00 55.93 C
ATOM 24 P G A 367 89.228 101.763 12.105 1.00 50.92 P
ATOM 25 OP1 G A 367 90.517 101.059 11.870 1.00 47.23 O
ATOM 26 OP2 G A 367 88.051 101.007 12.622 1.00 50.65 O
ATOM 27 O5' G A 367 89.503 102.978 13.093 1.00 48.35 O
TER
ATOM 1 O3' U B 397 92.664 93.242 9.127 1.00 61.17 O
ATOM 2 P A B 398 92.537 92.750 7.609 1.00 60.67 P
ATOM 3 OP1 A B 398 93.608 91.747 7.338 1.00 60.95 O
ATOM 4 OP2 A B 398 92.416 93.949 6.742 1.00 60.94 O
ATOM 5 O5' A B 398 91.129 92.015 7.600 1.00 60.69 O
ATOM 6 C5' A B 398 90.929 90.809 8.347 1.00 61.04 C
ATOM 7 C4' A B 398 89.463 90.477 8.403 1.00 62.73 C
ATOM 8 O4' A B 398 88.798 91.397 9.315 1.00 61.88 O
ATOM 9 C3' A B 398 88.721 90.578 7.072 1.00 63.21 C
ATOM 10 O3' A B 398 87.734 89.555 6.980 1.00 66.22 O
ATOM 11 C2' A B 398 88.054 91.948 7.172 1.00 61.82 C
ATOM 12 O2' A B 398 86.885 92.076 6.390 1.00 60.64 O
ATOM 13 C1' A B 398 87.706 91.999 8.656 1.00 62.10 C
ATOM 14 N9 A B 398 87.519 93.355 9.176 1.00 63.30 N
ATOM 15 C8 A B 398 88.468 94.303 9.484 1.00 63.09 C
ATOM 16 N7 A B 398 87.963 95.437 9.907 1.00 62.98 N
ATOM 17 C5 A B 398 86.590 95.222 9.881 1.00 63.54 C
ATOM 18 C6 A B 398 85.493 96.045 10.204 1.00 64.81 C
ATOM 19 N6 A B 398 85.613 97.306 10.635 1.00 65.76 N
ATOM 20 N1 A B 398 84.252 95.521 10.067 1.00 64.74 N
ATOM 21 C2 A B 398 84.133 94.260 9.634 1.00 63.75 C
ATOM 22 N3 A B 398 85.084 93.391 9.297 1.00 63.15 N
ATOM 23 C4 A B 398 86.304 93.941 9.443 1.00 63.17 C
ATOM 24 P A B 399 87.888 88.393 5.877 1.00 67.36 P
ATOM 25 OP1 A B 399 88.359 88.996 4.599 1.00 67.76 O
ATOM 26 OP2 A B 399 86.632 87.600 5.888 1.00 66.78 O
ATOM 27 O5' A B 399 89.068 87.491 6.450 1.00 67.64 O
TER
Atoms:
OP1: (93.355,102.840,8.090)
OP2: (93.147,100.404,7.302)
C3': (88.714,101.721,9.534)
C1': (87.331,100.964,7.772)
C5': (90.329,102.951,7.957)
O4': (88.281,101.873,7.238)
C8: (88.903,99.036,7.129)
O2': (86.269,101.976,9.675)
C6: (86.765,96.345,6.373)
C5: (87.488,97.509,6.696)
C4: (86.749,98.628,7.037)
P: (92.624,101.797,7.327)
C4': (88.901,102.614,8.319)
C2': (87.332,101.125,9.295)
C2: (84.841,97.574,6.752)
N1: (85.416,96.415,6.405)
N3: (85.409,98.728,7.085)
N6: (87.334,95.183,6.047)
N7: (88.849,97.781,6.753)
N9: (87.666,99.609,7.328)
O5': (91.117,101.749,7.847)
O3': (88.779,102.476,10.737)
OP2: (93.147,100.404,7.302)
C3': (88.714,101.721,9.534)
C1': (87.331,100.964,7.772)
C5': (90.329,102.951,7.957)
O4': (88.281,101.873,7.238)
C8: (88.903,99.036,7.129)
O2': (86.269,101.976,9.675)
C6: (86.765,96.345,6.373)
C5: (87.488,97.509,6.696)
C4: (86.749,98.628,7.037)
P: (92.624,101.797,7.327)
C4': (88.901,102.614,8.319)
C2': (87.332,101.125,9.295)
C2: (84.841,97.574,6.752)
N1: (85.416,96.415,6.405)
N3: (85.409,98.728,7.085)
N6: (87.334,95.183,6.047)
N7: (88.849,97.781,6.753)
N9: (87.666,99.609,7.328)
O5': (91.117,101.749,7.847)
O3': (88.779,102.476,10.737)
OP1: (93.608,91.747,7.338)
OP2: (92.416,93.949,6.742)
C3': (88.721,90.578,7.072)
C1': (87.706,91.999,8.656)
C5': (90.929,90.809,8.347)
O4': (88.798,91.397,9.315)
C8: (88.468,94.303,9.484)
O2': (86.885,92.076,6.390)
C6: (85.493,96.045,10.204)
C5: (86.590,95.222,9.881)
C4: (86.304,93.941,9.443)
P: (92.537,92.750,7.609)
C4': (89.463,90.477,8.403)
C2': (88.054,91.948,7.172)
C2: (84.133,94.260,9.634)
N1: (84.252,95.521,10.067)
N3: (85.084,93.391,9.297)
N6: (85.613,97.306,10.635)
N7: (87.963,95.437,9.907)
N9: (87.519,93.355,9.176)
O5': (91.129,92.015,7.600)
O3': (87.734,89.555,6.980)
OP2: (92.416,93.949,6.742)
C3': (88.721,90.578,7.072)
C1': (87.706,91.999,8.656)
C5': (90.929,90.809,8.347)
O4': (88.798,91.397,9.315)
C8: (88.468,94.303,9.484)
O2': (86.885,92.076,6.390)
C6: (85.493,96.045,10.204)
C5: (86.590,95.222,9.881)
C4: (86.304,93.941,9.443)
P: (92.537,92.750,7.609)
C4': (89.463,90.477,8.403)
C2': (88.054,91.948,7.172)
C2: (84.133,94.260,9.634)
N1: (84.252,95.521,10.067)
N3: (85.084,93.391,9.297)
N6: (85.613,97.306,10.635)
N7: (87.963,95.437,9.907)
N9: (87.519,93.355,9.176)
O5': (91.129,92.015,7.600)
O3': (87.734,89.555,6.980)
Image (generated by PyMOL):