Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01233:01234
Extra
PDB:
ATOM 1 O3' C A1232 10.429 79.663 71.340 1.00 60.00 O
ATOM 2 P A A1233 9.768 79.825 69.885 1.00 60.57 P
ATOM 3 OP1 A A1233 9.535 78.456 69.363 1.00 61.38 O
ATOM 4 OP2 A A1233 10.582 80.770 69.097 1.00 61.19 O
ATOM 5 O5' A A1233 8.357 80.512 70.173 1.00 59.07 O
ATOM 6 C5' A A1233 7.296 79.765 70.798 1.00 58.02 C
ATOM 7 C4' A A1233 5.980 80.497 70.683 1.00 57.68 C
ATOM 8 O4' A A1233 5.985 81.667 71.535 1.00 58.94 O
ATOM 9 C3' A A1233 5.623 81.052 69.321 1.00 58.98 C
ATOM 10 O3' A A1233 5.140 80.056 68.434 1.00 60.06 O
ATOM 11 C2' A A1233 4.580 82.100 69.677 1.00 59.02 C
ATOM 12 O2' A A1233 3.337 81.534 70.009 1.00 57.95 O
ATOM 13 C1' A A1233 5.179 82.683 70.956 1.00 60.17 C
ATOM 14 N9 A A1233 6.012 83.866 70.717 1.00 61.82 N
ATOM 15 C8 A A1233 7.358 83.916 70.438 1.00 62.31 C
ATOM 16 N7 A A1233 7.819 85.132 70.275 1.00 61.59 N
ATOM 17 C5 A A1233 6.705 85.937 70.455 1.00 60.79 C
ATOM 18 C6 A A1233 6.530 87.326 70.406 1.00 60.79 C
ATOM 19 N6 A A1233 7.514 88.186 70.148 1.00 61.47 N
ATOM 20 N1 A A1233 5.293 87.811 70.630 1.00 60.65 N
ATOM 21 C2 A A1233 4.303 86.948 70.880 1.00 61.01 C
ATOM 22 N3 A A1233 4.341 85.621 70.949 1.00 60.94 N
ATOM 23 C4 A A1233 5.586 85.172 70.726 1.00 61.10 C
ATOM 24 P C A1234 5.511 80.150 66.873 1.00 61.39 P
ATOM 25 OP1 C A1234 4.922 78.973 66.199 1.00 62.40 O
ATOM 26 OP2 C A1234 6.964 80.413 66.740 1.00 63.22 O
ATOM 27 O5' C A1234 4.729 81.448 66.392 1.00 61.42 O
TER
ATOM 1 O3' A B1233 5.140 80.056 68.434 1.00 60.06 O
ATOM 2 P C B1234 5.511 80.150 66.873 1.00 61.39 P
ATOM 3 OP1 C B1234 4.922 78.973 66.199 1.00 62.40 O
ATOM 4 OP2 C B1234 6.964 80.413 66.740 1.00 63.22 O
ATOM 5 O5' C B1234 4.729 81.448 66.392 1.00 61.42 O
ATOM 6 C5' C B1234 3.301 81.477 66.428 1.00 62.30 C
ATOM 7 C4' C B1234 2.790 82.851 66.096 1.00 63.15 C
ATOM 8 O4' C B1234 3.163 83.786 67.136 1.00 63.49 O
ATOM 9 C3' C B1234 3.355 83.494 64.850 1.00 63.16 C
ATOM 10 O3' C B1234 2.782 82.989 63.672 1.00 66.31 O
ATOM 11 C2' C B1234 3.005 84.949 65.074 1.00 62.84 C
ATOM 12 O2' C B1234 1.650 85.216 64.792 1.00 60.03 O
ATOM 13 C1' C B1234 3.293 85.083 66.573 1.00 63.20 C
ATOM 14 N1 C B1234 4.664 85.569 66.816 1.00 63.24 N
ATOM 15 C2 C B1234 4.883 86.953 66.880 1.00 63.38 C
ATOM 16 O2 C B1234 3.912 87.723 66.794 1.00 64.59 O
ATOM 17 N3 C B1234 6.141 87.416 67.040 1.00 62.88 N
ATOM 18 C4 C B1234 7.155 86.561 67.153 1.00 63.05 C
ATOM 19 N4 C B1234 8.381 87.068 67.298 1.00 62.64 N
ATOM 20 C5 C B1234 6.959 85.146 67.121 1.00 62.93 C
ATOM 21 C6 C B1234 5.711 84.699 66.952 1.00 61.93 C
ATOM 22 P U B1235 3.716 82.757 62.395 1.00 69.05 P
ATOM 23 OP1 U B1235 2.856 82.266 61.295 1.00 70.76 O
ATOM 24 OP2 U B1235 4.884 81.949 62.830 1.00 67.62 O
ATOM 25 O5' U B1235 4.207 84.228 62.033 1.00 69.85 O
TER
ATOM 2 P A A1233 9.768 79.825 69.885 1.00 60.57 P
ATOM 3 OP1 A A1233 9.535 78.456 69.363 1.00 61.38 O
ATOM 4 OP2 A A1233 10.582 80.770 69.097 1.00 61.19 O
ATOM 5 O5' A A1233 8.357 80.512 70.173 1.00 59.07 O
ATOM 6 C5' A A1233 7.296 79.765 70.798 1.00 58.02 C
ATOM 7 C4' A A1233 5.980 80.497 70.683 1.00 57.68 C
ATOM 8 O4' A A1233 5.985 81.667 71.535 1.00 58.94 O
ATOM 9 C3' A A1233 5.623 81.052 69.321 1.00 58.98 C
ATOM 10 O3' A A1233 5.140 80.056 68.434 1.00 60.06 O
ATOM 11 C2' A A1233 4.580 82.100 69.677 1.00 59.02 C
ATOM 12 O2' A A1233 3.337 81.534 70.009 1.00 57.95 O
ATOM 13 C1' A A1233 5.179 82.683 70.956 1.00 60.17 C
ATOM 14 N9 A A1233 6.012 83.866 70.717 1.00 61.82 N
ATOM 15 C8 A A1233 7.358 83.916 70.438 1.00 62.31 C
ATOM 16 N7 A A1233 7.819 85.132 70.275 1.00 61.59 N
ATOM 17 C5 A A1233 6.705 85.937 70.455 1.00 60.79 C
ATOM 18 C6 A A1233 6.530 87.326 70.406 1.00 60.79 C
ATOM 19 N6 A A1233 7.514 88.186 70.148 1.00 61.47 N
ATOM 20 N1 A A1233 5.293 87.811 70.630 1.00 60.65 N
ATOM 21 C2 A A1233 4.303 86.948 70.880 1.00 61.01 C
ATOM 22 N3 A A1233 4.341 85.621 70.949 1.00 60.94 N
ATOM 23 C4 A A1233 5.586 85.172 70.726 1.00 61.10 C
ATOM 24 P C A1234 5.511 80.150 66.873 1.00 61.39 P
ATOM 25 OP1 C A1234 4.922 78.973 66.199 1.00 62.40 O
ATOM 26 OP2 C A1234 6.964 80.413 66.740 1.00 63.22 O
ATOM 27 O5' C A1234 4.729 81.448 66.392 1.00 61.42 O
TER
ATOM 1 O3' A B1233 5.140 80.056 68.434 1.00 60.06 O
ATOM 2 P C B1234 5.511 80.150 66.873 1.00 61.39 P
ATOM 3 OP1 C B1234 4.922 78.973 66.199 1.00 62.40 O
ATOM 4 OP2 C B1234 6.964 80.413 66.740 1.00 63.22 O
ATOM 5 O5' C B1234 4.729 81.448 66.392 1.00 61.42 O
ATOM 6 C5' C B1234 3.301 81.477 66.428 1.00 62.30 C
ATOM 7 C4' C B1234 2.790 82.851 66.096 1.00 63.15 C
ATOM 8 O4' C B1234 3.163 83.786 67.136 1.00 63.49 O
ATOM 9 C3' C B1234 3.355 83.494 64.850 1.00 63.16 C
ATOM 10 O3' C B1234 2.782 82.989 63.672 1.00 66.31 O
ATOM 11 C2' C B1234 3.005 84.949 65.074 1.00 62.84 C
ATOM 12 O2' C B1234 1.650 85.216 64.792 1.00 60.03 O
ATOM 13 C1' C B1234 3.293 85.083 66.573 1.00 63.20 C
ATOM 14 N1 C B1234 4.664 85.569 66.816 1.00 63.24 N
ATOM 15 C2 C B1234 4.883 86.953 66.880 1.00 63.38 C
ATOM 16 O2 C B1234 3.912 87.723 66.794 1.00 64.59 O
ATOM 17 N3 C B1234 6.141 87.416 67.040 1.00 62.88 N
ATOM 18 C4 C B1234 7.155 86.561 67.153 1.00 63.05 C
ATOM 19 N4 C B1234 8.381 87.068 67.298 1.00 62.64 N
ATOM 20 C5 C B1234 6.959 85.146 67.121 1.00 62.93 C
ATOM 21 C6 C B1234 5.711 84.699 66.952 1.00 61.93 C
ATOM 22 P U B1235 3.716 82.757 62.395 1.00 69.05 P
ATOM 23 OP1 U B1235 2.856 82.266 61.295 1.00 70.76 O
ATOM 24 OP2 U B1235 4.884 81.949 62.830 1.00 67.62 O
ATOM 25 O5' U B1235 4.207 84.228 62.033 1.00 69.85 O
TER
Atoms:
OP1: (9.535,78.456,69.363)
OP2: (10.582,80.770,69.097)
C3': (5.623,81.052,69.321)
C1': (5.179,82.683,70.956)
C5': (7.296,79.765,70.798)
O4': (5.985,81.667,71.535)
C8: (7.358,83.916,70.438)
O2': (3.337,81.534,70.009)
C6: (6.530,87.326,70.406)
C5: (6.705,85.937,70.455)
C4: (5.586,85.172,70.726)
P: (9.768,79.825,69.885)
C4': (5.980,80.497,70.683)
C2': (4.580,82.100,69.677)
C2: (4.303,86.948,70.880)
N1: (5.293,87.811,70.630)
N3: (4.341,85.621,70.949)
N6: (7.514,88.186,70.148)
N7: (7.819,85.132,70.275)
N9: (6.012,83.866,70.717)
O5': (8.357,80.512,70.173)
O3': (5.140,80.056,68.434)
OP2: (10.582,80.770,69.097)
C3': (5.623,81.052,69.321)
C1': (5.179,82.683,70.956)
C5': (7.296,79.765,70.798)
O4': (5.985,81.667,71.535)
C8: (7.358,83.916,70.438)
O2': (3.337,81.534,70.009)
C6: (6.530,87.326,70.406)
C5: (6.705,85.937,70.455)
C4: (5.586,85.172,70.726)
P: (9.768,79.825,69.885)
C4': (5.980,80.497,70.683)
C2': (4.580,82.100,69.677)
C2: (4.303,86.948,70.880)
N1: (5.293,87.811,70.630)
N3: (4.341,85.621,70.949)
N6: (7.514,88.186,70.148)
N7: (7.819,85.132,70.275)
N9: (6.012,83.866,70.717)
O5': (8.357,80.512,70.173)
O3': (5.140,80.056,68.434)
C2: (4.883,86.953,66.880)
OP1: (4.922,78.973,66.199)
OP2: (6.964,80.413,66.740)
C4: (7.155,86.561,67.153)
O5': (4.729,81.448,66.392)
C3': (3.355,83.494,64.850)
C1': (3.293,85.083,66.573)
O4': (3.163,83.786,67.136)
C5': (3.301,81.477,66.428)
P: (5.511,80.150,66.873)
O2: (3.912,87.723,66.794)
C4': (2.790,82.851,66.096)
C2': (3.005,84.949,65.074)
O2': (1.650,85.216,64.792)
N1: (4.664,85.569,66.816)
N3: (6.141,87.416,67.040)
N4: (8.381,87.068,67.298)
C6: (5.711,84.699,66.952)
C5: (6.959,85.146,67.121)
O3': (2.782,82.989,63.672)
OP1: (4.922,78.973,66.199)
OP2: (6.964,80.413,66.740)
C4: (7.155,86.561,67.153)
O5': (4.729,81.448,66.392)
C3': (3.355,83.494,64.850)
C1': (3.293,85.083,66.573)
O4': (3.163,83.786,67.136)
C5': (3.301,81.477,66.428)
P: (5.511,80.150,66.873)
O2: (3.912,87.723,66.794)
C4': (2.790,82.851,66.096)
C2': (3.005,84.949,65.074)
O2': (1.650,85.216,64.792)
N1: (4.664,85.569,66.816)
N3: (6.141,87.416,67.040)
N4: (8.381,87.068,67.298)
C6: (5.711,84.699,66.952)
C5: (6.959,85.146,67.121)
O3': (2.782,82.989,63.672)
Image (generated by PyMOL):