Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01952:01927
Extra
PDB:
ATOM 1 O3' G A1951 103.519 112.520 107.729 1.00 59.79 O
ATOM 2 P C A1952 101.978 112.213 108.069 1.00 59.32 P
ATOM 3 OP1 C A1952 101.151 113.126 107.239 1.00 58.23 O
ATOM 4 OP2 C A1952 101.831 112.241 109.544 1.00 58.54 O
ATOM 5 O5' C A1952 101.735 110.721 107.554 1.00 60.66 O
ATOM 6 C5' C A1952 101.750 109.598 108.466 1.00 61.84 C
ATOM 7 C4' C A1952 100.512 108.731 108.286 1.00 62.68 C
ATOM 8 O4' C A1952 99.320 109.503 108.583 1.00 63.12 O
ATOM 9 C3' C A1952 100.228 108.168 106.903 1.00 63.13 C
ATOM 10 O3' C A1952 100.984 106.994 106.638 1.00 67.17 O
ATOM 11 C2' C A1952 98.747 107.834 106.988 1.00 61.75 C
ATOM 12 O2' C A1952 98.513 106.615 107.663 1.00 60.58 O
ATOM 13 C1' C A1952 98.224 108.992 107.839 1.00 61.64 C
ATOM 14 N1 C A1952 97.621 110.090 107.062 1.00 60.84 N
ATOM 15 C2 C A1952 96.222 110.112 106.880 1.00 60.88 C
ATOM 16 O2 C A1952 95.526 109.185 107.341 1.00 61.17 O
ATOM 17 N3 C A1952 95.666 111.139 106.201 1.00 60.20 N
ATOM 18 C4 C A1952 96.439 112.105 105.699 1.00 60.12 C
ATOM 19 N4 C A1952 95.843 113.101 105.048 1.00 61.18 N
ATOM 20 C5 C A1952 97.856 112.093 105.846 1.00 60.22 C
ATOM 21 C6 C A1952 98.399 111.079 106.529 1.00 59.95 C
ATOM 22 P A A1953 101.421 106.654 105.128 1.00 70.12 P
ATOM 23 OP1 A A1953 100.225 106.248 104.339 1.00 69.11 O
ATOM 24 OP2 A A1953 102.599 105.739 105.216 1.00 70.15 O
ATOM 25 O5' A A1953 101.906 108.056 104.558 1.00 67.62 O
TER
ATOM 1 O3' U B1926 98.439 117.437 103.492 1.00 55.79 O
ATOM 2 P A B1927 97.219 116.640 104.172 1.00 56.43 P
ATOM 3 OP1 A B1927 97.426 115.201 103.859 1.00 56.47 O
ATOM 4 OP2 A B1927 95.937 117.294 103.811 1.00 56.00 O
ATOM 5 O5' A B1927 97.445 116.832 105.730 1.00 55.91 O
ATOM 6 C5' A B1927 98.570 116.242 106.375 1.00 57.69 C
ATOM 7 C4' A B1927 98.153 115.635 107.685 1.00 58.72 C
ATOM 8 O4' A B1927 99.337 115.100 108.331 1.00 60.12 O
ATOM 9 C3' A B1927 97.536 116.615 108.677 1.00 58.89 C
ATOM 10 O3' A B1927 96.647 115.907 109.527 1.00 58.27 O
ATOM 11 C2' A B1927 98.745 117.061 109.483 1.00 59.64 C
ATOM 12 O2' A B1927 98.390 117.517 110.770 1.00 60.92 O
ATOM 13 C1' A B1927 99.550 115.763 109.558 1.00 60.75 C
ATOM 14 N9 A B1927 100.987 115.979 109.711 1.00 62.60 N
ATOM 15 C8 A B1927 101.843 116.606 108.840 1.00 63.04 C
ATOM 16 N7 A B1927 103.075 116.689 109.277 1.00 64.09 N
ATOM 17 C5 A B1927 103.033 116.064 110.513 1.00 64.79 C
ATOM 18 C6 A B1927 104.017 115.835 111.488 1.00 65.05 C
ATOM 19 N6 A B1927 105.279 116.245 111.373 1.00 64.97 N
ATOM 20 N1 A B1927 103.652 115.170 112.604 1.00 66.44 N
ATOM 21 C2 A B1927 102.374 114.779 112.731 1.00 66.97 C
ATOM 22 N3 A B1927 101.353 114.950 111.891 1.00 66.31 N
ATOM 23 C4 A B1927 101.755 115.606 110.787 1.00 64.98 C
ATOM 24 P C B1928 95.073 116.226 109.504 1.00 58.01 P
ATOM 25 OP1 C B1928 94.696 116.744 108.166 1.00 58.05 O
ATOM 26 OP2 C B1928 94.761 117.026 110.715 1.00 57.46 O
ATOM 27 O5' C B1928 94.448 114.776 109.709 1.00 58.62 O
TER
ATOM 2 P C A1952 101.978 112.213 108.069 1.00 59.32 P
ATOM 3 OP1 C A1952 101.151 113.126 107.239 1.00 58.23 O
ATOM 4 OP2 C A1952 101.831 112.241 109.544 1.00 58.54 O
ATOM 5 O5' C A1952 101.735 110.721 107.554 1.00 60.66 O
ATOM 6 C5' C A1952 101.750 109.598 108.466 1.00 61.84 C
ATOM 7 C4' C A1952 100.512 108.731 108.286 1.00 62.68 C
ATOM 8 O4' C A1952 99.320 109.503 108.583 1.00 63.12 O
ATOM 9 C3' C A1952 100.228 108.168 106.903 1.00 63.13 C
ATOM 10 O3' C A1952 100.984 106.994 106.638 1.00 67.17 O
ATOM 11 C2' C A1952 98.747 107.834 106.988 1.00 61.75 C
ATOM 12 O2' C A1952 98.513 106.615 107.663 1.00 60.58 O
ATOM 13 C1' C A1952 98.224 108.992 107.839 1.00 61.64 C
ATOM 14 N1 C A1952 97.621 110.090 107.062 1.00 60.84 N
ATOM 15 C2 C A1952 96.222 110.112 106.880 1.00 60.88 C
ATOM 16 O2 C A1952 95.526 109.185 107.341 1.00 61.17 O
ATOM 17 N3 C A1952 95.666 111.139 106.201 1.00 60.20 N
ATOM 18 C4 C A1952 96.439 112.105 105.699 1.00 60.12 C
ATOM 19 N4 C A1952 95.843 113.101 105.048 1.00 61.18 N
ATOM 20 C5 C A1952 97.856 112.093 105.846 1.00 60.22 C
ATOM 21 C6 C A1952 98.399 111.079 106.529 1.00 59.95 C
ATOM 22 P A A1953 101.421 106.654 105.128 1.00 70.12 P
ATOM 23 OP1 A A1953 100.225 106.248 104.339 1.00 69.11 O
ATOM 24 OP2 A A1953 102.599 105.739 105.216 1.00 70.15 O
ATOM 25 O5' A A1953 101.906 108.056 104.558 1.00 67.62 O
TER
ATOM 1 O3' U B1926 98.439 117.437 103.492 1.00 55.79 O
ATOM 2 P A B1927 97.219 116.640 104.172 1.00 56.43 P
ATOM 3 OP1 A B1927 97.426 115.201 103.859 1.00 56.47 O
ATOM 4 OP2 A B1927 95.937 117.294 103.811 1.00 56.00 O
ATOM 5 O5' A B1927 97.445 116.832 105.730 1.00 55.91 O
ATOM 6 C5' A B1927 98.570 116.242 106.375 1.00 57.69 C
ATOM 7 C4' A B1927 98.153 115.635 107.685 1.00 58.72 C
ATOM 8 O4' A B1927 99.337 115.100 108.331 1.00 60.12 O
ATOM 9 C3' A B1927 97.536 116.615 108.677 1.00 58.89 C
ATOM 10 O3' A B1927 96.647 115.907 109.527 1.00 58.27 O
ATOM 11 C2' A B1927 98.745 117.061 109.483 1.00 59.64 C
ATOM 12 O2' A B1927 98.390 117.517 110.770 1.00 60.92 O
ATOM 13 C1' A B1927 99.550 115.763 109.558 1.00 60.75 C
ATOM 14 N9 A B1927 100.987 115.979 109.711 1.00 62.60 N
ATOM 15 C8 A B1927 101.843 116.606 108.840 1.00 63.04 C
ATOM 16 N7 A B1927 103.075 116.689 109.277 1.00 64.09 N
ATOM 17 C5 A B1927 103.033 116.064 110.513 1.00 64.79 C
ATOM 18 C6 A B1927 104.017 115.835 111.488 1.00 65.05 C
ATOM 19 N6 A B1927 105.279 116.245 111.373 1.00 64.97 N
ATOM 20 N1 A B1927 103.652 115.170 112.604 1.00 66.44 N
ATOM 21 C2 A B1927 102.374 114.779 112.731 1.00 66.97 C
ATOM 22 N3 A B1927 101.353 114.950 111.891 1.00 66.31 N
ATOM 23 C4 A B1927 101.755 115.606 110.787 1.00 64.98 C
ATOM 24 P C B1928 95.073 116.226 109.504 1.00 58.01 P
ATOM 25 OP1 C B1928 94.696 116.744 108.166 1.00 58.05 O
ATOM 26 OP2 C B1928 94.761 117.026 110.715 1.00 57.46 O
ATOM 27 O5' C B1928 94.448 114.776 109.709 1.00 58.62 O
TER
Atoms:
C2: (96.222,110.112,106.880)
OP1: (101.151,113.126,107.239)
OP2: (101.831,112.241,109.544)
C4: (96.439,112.105,105.699)
O5': (101.735,110.721,107.554)
C3': (100.228,108.168,106.903)
C1': (98.224,108.992,107.839)
O4': (99.320,109.503,108.583)
C5': (101.750,109.598,108.466)
P: (101.978,112.213,108.069)
O2: (95.526,109.185,107.341)
C4': (100.512,108.731,108.286)
C2': (98.747,107.834,106.988)
O2': (98.513,106.615,107.663)
N1: (97.621,110.090,107.062)
N3: (95.666,111.139,106.201)
N4: (95.843,113.101,105.048)
C6: (98.399,111.079,106.529)
C5: (97.856,112.093,105.846)
O3': (100.984,106.994,106.638)
OP1: (101.151,113.126,107.239)
OP2: (101.831,112.241,109.544)
C4: (96.439,112.105,105.699)
O5': (101.735,110.721,107.554)
C3': (100.228,108.168,106.903)
C1': (98.224,108.992,107.839)
O4': (99.320,109.503,108.583)
C5': (101.750,109.598,108.466)
P: (101.978,112.213,108.069)
O2: (95.526,109.185,107.341)
C4': (100.512,108.731,108.286)
C2': (98.747,107.834,106.988)
O2': (98.513,106.615,107.663)
N1: (97.621,110.090,107.062)
N3: (95.666,111.139,106.201)
N4: (95.843,113.101,105.048)
C6: (98.399,111.079,106.529)
C5: (97.856,112.093,105.846)
O3': (100.984,106.994,106.638)
OP1: (97.426,115.201,103.859)
OP2: (95.937,117.294,103.811)
C3': (97.536,116.615,108.677)
C1': (99.550,115.763,109.558)
C5': (98.570,116.242,106.375)
O4': (99.337,115.100,108.331)
C8: (101.843,116.606,108.840)
O2': (98.390,117.517,110.770)
C6: (104.017,115.835,111.488)
C5: (103.033,116.064,110.513)
C4: (101.755,115.606,110.787)
P: (97.219,116.640,104.172)
C4': (98.153,115.635,107.685)
C2': (98.745,117.061,109.483)
C2: (102.374,114.779,112.731)
N1: (103.652,115.170,112.604)
N3: (101.353,114.950,111.891)
N6: (105.279,116.245,111.373)
N7: (103.075,116.689,109.277)
N9: (100.987,115.979,109.711)
O5': (97.445,116.832,105.730)
O3': (96.647,115.907,109.527)
OP2: (95.937,117.294,103.811)
C3': (97.536,116.615,108.677)
C1': (99.550,115.763,109.558)
C5': (98.570,116.242,106.375)
O4': (99.337,115.100,108.331)
C8: (101.843,116.606,108.840)
O2': (98.390,117.517,110.770)
C6: (104.017,115.835,111.488)
C5: (103.033,116.064,110.513)
C4: (101.755,115.606,110.787)
P: (97.219,116.640,104.172)
C4': (98.153,115.635,107.685)
C2': (98.745,117.061,109.483)
C2: (102.374,114.779,112.731)
N1: (103.652,115.170,112.604)
N3: (101.353,114.950,111.891)
N6: (105.279,116.245,111.373)
N7: (103.075,116.689,109.277)
N9: (100.987,115.979,109.711)
O5': (97.445,116.832,105.730)
O3': (96.647,115.907,109.527)
Image (generated by PyMOL):