Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01039:01038
Extra
PDB:
ATOM 1 O3' A A1038 34.727 111.303 106.186 1.00 42.79 O
ATOM 2 P C A1039 34.539 110.201 105.032 1.00 42.75 P
ATOM 3 OP1 C A1039 34.560 110.949 103.752 1.00 42.29 O
ATOM 4 OP2 C A1039 33.385 109.326 105.350 1.00 42.26 O
ATOM 5 O5' C A1039 35.840 109.303 105.145 1.00 43.83 O
ATOM 6 C5' C A1039 36.958 109.499 104.285 1.00 45.96 C
ATOM 7 C4' C A1039 37.985 108.451 104.575 1.00 49.01 C
ATOM 8 O4' C A1039 38.309 108.544 105.991 1.00 50.11 O
ATOM 9 C3' C A1039 37.497 107.013 104.444 1.00 51.46 C
ATOM 10 O3' C A1039 37.469 106.397 103.149 1.00 51.37 O
ATOM 11 C2' C A1039 38.517 106.295 105.315 1.00 54.01 C
ATOM 12 O2' C A1039 39.802 106.217 104.710 1.00 55.74 O
ATOM 13 C1' C A1039 38.593 107.247 106.503 1.00 52.07 C
ATOM 14 N1 C A1039 37.588 106.885 107.526 1.00 51.35 N
ATOM 15 C2 C A1039 38.013 106.215 108.684 1.00 52.07 C
ATOM 16 O2 C A1039 39.221 105.953 108.827 1.00 52.36 O
ATOM 17 N3 C A1039 37.096 105.868 109.618 1.00 51.51 N
ATOM 18 C4 C A1039 35.809 106.165 109.433 1.00 50.52 C
ATOM 19 N4 C A1039 34.942 105.812 110.383 1.00 48.67 N
ATOM 20 C5 C A1039 35.353 106.841 108.268 1.00 50.76 C
ATOM 21 C6 C A1039 36.265 107.182 107.352 1.00 50.75 C
ATOM 22 P A A1040 38.072 107.137 101.857 1.00 52.30 P
ATOM 23 OP1 A A1040 39.296 107.891 102.245 1.00 54.17 O
ATOM 24 OP2 A A1040 36.968 107.834 101.149 1.00 52.63 O
ATOM 25 O5' A A1040 38.555 105.922 100.950 1.00 48.10 O
TER
ATOM 1 O3' A B1037 31.474 109.329 111.219 1.00 38.91 O
ATOM 2 P A B1038 32.015 108.403 110.031 1.00 40.96 P
ATOM 3 OP1 A B1038 30.863 108.127 109.139 1.00 40.78 O
ATOM 4 OP2 A B1038 32.760 107.267 110.635 1.00 40.28 O
ATOM 5 O5' A B1038 33.070 109.333 109.274 1.00 40.54 O
ATOM 6 C5' A B1038 32.677 110.593 108.681 1.00 41.61 C
ATOM 7 C4' A B1038 33.890 111.471 108.451 1.00 42.41 C
ATOM 8 O4' A B1038 34.534 111.691 109.723 1.00 42.65 O
ATOM 9 C3' A B1038 34.976 110.904 107.540 1.00 42.74 C
ATOM 10 O3' A B1038 34.727 111.303 106.186 1.00 42.79 O
ATOM 11 C2' A B1038 36.254 111.568 108.057 1.00 42.27 C
ATOM 12 O2' A B1038 36.538 112.822 107.471 1.00 40.70 O
ATOM 13 C1' A B1038 35.930 111.774 109.540 1.00 42.32 C
ATOM 14 N9 A B1038 36.565 110.875 110.496 1.00 42.07 N
ATOM 15 C8 A B1038 36.474 109.507 110.599 1.00 42.68 C
ATOM 16 N7 A B1038 37.154 109.008 111.604 1.00 42.54 N
ATOM 17 C5 A B1038 37.740 110.121 112.194 1.00 39.77 C
ATOM 18 C6 A B1038 38.578 110.266 113.297 1.00 37.00 C
ATOM 19 N6 A B1038 38.998 109.244 114.043 1.00 37.95 N
ATOM 20 N1 A B1038 38.975 111.511 113.622 1.00 35.70 N
ATOM 21 C2 A B1038 38.547 112.537 112.882 1.00 35.81 C
ATOM 22 N3 A B1038 37.757 112.532 111.823 1.00 36.67 N
ATOM 23 C4 A B1038 37.384 111.276 111.523 1.00 40.20 C
ATOM 24 P C B1039 34.539 110.201 105.032 1.00 42.75 P
ATOM 25 OP1 C B1039 34.560 110.949 103.752 1.00 42.29 O
ATOM 26 OP2 C B1039 33.385 109.326 105.350 1.00 42.26 O
ATOM 27 O5' C B1039 35.840 109.303 105.145 1.00 43.83 O
TER
ATOM 2 P C A1039 34.539 110.201 105.032 1.00 42.75 P
ATOM 3 OP1 C A1039 34.560 110.949 103.752 1.00 42.29 O
ATOM 4 OP2 C A1039 33.385 109.326 105.350 1.00 42.26 O
ATOM 5 O5' C A1039 35.840 109.303 105.145 1.00 43.83 O
ATOM 6 C5' C A1039 36.958 109.499 104.285 1.00 45.96 C
ATOM 7 C4' C A1039 37.985 108.451 104.575 1.00 49.01 C
ATOM 8 O4' C A1039 38.309 108.544 105.991 1.00 50.11 O
ATOM 9 C3' C A1039 37.497 107.013 104.444 1.00 51.46 C
ATOM 10 O3' C A1039 37.469 106.397 103.149 1.00 51.37 O
ATOM 11 C2' C A1039 38.517 106.295 105.315 1.00 54.01 C
ATOM 12 O2' C A1039 39.802 106.217 104.710 1.00 55.74 O
ATOM 13 C1' C A1039 38.593 107.247 106.503 1.00 52.07 C
ATOM 14 N1 C A1039 37.588 106.885 107.526 1.00 51.35 N
ATOM 15 C2 C A1039 38.013 106.215 108.684 1.00 52.07 C
ATOM 16 O2 C A1039 39.221 105.953 108.827 1.00 52.36 O
ATOM 17 N3 C A1039 37.096 105.868 109.618 1.00 51.51 N
ATOM 18 C4 C A1039 35.809 106.165 109.433 1.00 50.52 C
ATOM 19 N4 C A1039 34.942 105.812 110.383 1.00 48.67 N
ATOM 20 C5 C A1039 35.353 106.841 108.268 1.00 50.76 C
ATOM 21 C6 C A1039 36.265 107.182 107.352 1.00 50.75 C
ATOM 22 P A A1040 38.072 107.137 101.857 1.00 52.30 P
ATOM 23 OP1 A A1040 39.296 107.891 102.245 1.00 54.17 O
ATOM 24 OP2 A A1040 36.968 107.834 101.149 1.00 52.63 O
ATOM 25 O5' A A1040 38.555 105.922 100.950 1.00 48.10 O
TER
ATOM 1 O3' A B1037 31.474 109.329 111.219 1.00 38.91 O
ATOM 2 P A B1038 32.015 108.403 110.031 1.00 40.96 P
ATOM 3 OP1 A B1038 30.863 108.127 109.139 1.00 40.78 O
ATOM 4 OP2 A B1038 32.760 107.267 110.635 1.00 40.28 O
ATOM 5 O5' A B1038 33.070 109.333 109.274 1.00 40.54 O
ATOM 6 C5' A B1038 32.677 110.593 108.681 1.00 41.61 C
ATOM 7 C4' A B1038 33.890 111.471 108.451 1.00 42.41 C
ATOM 8 O4' A B1038 34.534 111.691 109.723 1.00 42.65 O
ATOM 9 C3' A B1038 34.976 110.904 107.540 1.00 42.74 C
ATOM 10 O3' A B1038 34.727 111.303 106.186 1.00 42.79 O
ATOM 11 C2' A B1038 36.254 111.568 108.057 1.00 42.27 C
ATOM 12 O2' A B1038 36.538 112.822 107.471 1.00 40.70 O
ATOM 13 C1' A B1038 35.930 111.774 109.540 1.00 42.32 C
ATOM 14 N9 A B1038 36.565 110.875 110.496 1.00 42.07 N
ATOM 15 C8 A B1038 36.474 109.507 110.599 1.00 42.68 C
ATOM 16 N7 A B1038 37.154 109.008 111.604 1.00 42.54 N
ATOM 17 C5 A B1038 37.740 110.121 112.194 1.00 39.77 C
ATOM 18 C6 A B1038 38.578 110.266 113.297 1.00 37.00 C
ATOM 19 N6 A B1038 38.998 109.244 114.043 1.00 37.95 N
ATOM 20 N1 A B1038 38.975 111.511 113.622 1.00 35.70 N
ATOM 21 C2 A B1038 38.547 112.537 112.882 1.00 35.81 C
ATOM 22 N3 A B1038 37.757 112.532 111.823 1.00 36.67 N
ATOM 23 C4 A B1038 37.384 111.276 111.523 1.00 40.20 C
ATOM 24 P C B1039 34.539 110.201 105.032 1.00 42.75 P
ATOM 25 OP1 C B1039 34.560 110.949 103.752 1.00 42.29 O
ATOM 26 OP2 C B1039 33.385 109.326 105.350 1.00 42.26 O
ATOM 27 O5' C B1039 35.840 109.303 105.145 1.00 43.83 O
TER
Atoms:
C2: (38.013,106.215,108.684)
OP1: (34.560,110.949,103.752)
OP2: (33.385,109.326,105.350)
C4: (35.809,106.165,109.433)
O5': (35.840,109.303,105.145)
C3': (37.497,107.013,104.444)
C1': (38.593,107.247,106.503)
O4': (38.309,108.544,105.991)
C5': (36.958,109.499,104.285)
P: (34.539,110.201,105.032)
O2: (39.221,105.953,108.827)
C4': (37.985,108.451,104.575)
C2': (38.517,106.295,105.315)
O2': (39.802,106.217,104.710)
N1: (37.588,106.885,107.526)
N3: (37.096,105.868,109.618)
N4: (34.942,105.812,110.383)
C6: (36.265,107.182,107.352)
C5: (35.353,106.841,108.268)
O3': (37.469,106.397,103.149)
OP1: (34.560,110.949,103.752)
OP2: (33.385,109.326,105.350)
C4: (35.809,106.165,109.433)
O5': (35.840,109.303,105.145)
C3': (37.497,107.013,104.444)
C1': (38.593,107.247,106.503)
O4': (38.309,108.544,105.991)
C5': (36.958,109.499,104.285)
P: (34.539,110.201,105.032)
O2: (39.221,105.953,108.827)
C4': (37.985,108.451,104.575)
C2': (38.517,106.295,105.315)
O2': (39.802,106.217,104.710)
N1: (37.588,106.885,107.526)
N3: (37.096,105.868,109.618)
N4: (34.942,105.812,110.383)
C6: (36.265,107.182,107.352)
C5: (35.353,106.841,108.268)
O3': (37.469,106.397,103.149)
OP1: (30.863,108.127,109.139)
OP2: (32.760,107.267,110.635)
C3': (34.976,110.904,107.540)
C1': (35.930,111.774,109.540)
C5': (32.677,110.593,108.681)
O4': (34.534,111.691,109.723)
C8: (36.474,109.507,110.599)
O2': (36.538,112.822,107.471)
C6: (38.578,110.266,113.297)
C5: (37.740,110.121,112.194)
C4: (37.384,111.276,111.523)
P: (32.015,108.403,110.031)
C4': (33.890,111.471,108.451)
C2': (36.254,111.568,108.057)
C2: (38.547,112.537,112.882)
N1: (38.975,111.511,113.622)
N3: (37.757,112.532,111.823)
N6: (38.998,109.244,114.043)
N7: (37.154,109.008,111.604)
N9: (36.565,110.875,110.496)
O5': (33.070,109.333,109.274)
O3': (34.727,111.303,106.186)
OP2: (32.760,107.267,110.635)
C3': (34.976,110.904,107.540)
C1': (35.930,111.774,109.540)
C5': (32.677,110.593,108.681)
O4': (34.534,111.691,109.723)
C8: (36.474,109.507,110.599)
O2': (36.538,112.822,107.471)
C6: (38.578,110.266,113.297)
C5: (37.740,110.121,112.194)
C4: (37.384,111.276,111.523)
P: (32.015,108.403,110.031)
C4': (33.890,111.471,108.451)
C2': (36.254,111.568,108.057)
C2: (38.547,112.537,112.882)
N1: (38.975,111.511,113.622)
N3: (37.757,112.532,111.823)
N6: (38.998,109.244,114.043)
N7: (37.154,109.008,111.604)
N9: (36.565,110.875,110.496)
O5': (33.070,109.333,109.274)
O3': (34.727,111.303,106.186)
Image (generated by PyMOL):