Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A250:A235
Extra
PDB:
ATOM 1 O3' A A 249 95.481 123.497 4.069 1.00 62.08 O
ATOM 2 P A A 250 97.044 123.476 4.376 1.00 60.80 P
ATOM 3 OP1 A A 250 97.221 123.429 5.842 1.00 62.47 O
ATOM 4 OP2 A A 250 97.692 124.560 3.610 1.00 61.81 O
ATOM 5 O5' A A 250 97.501 122.066 3.791 1.00 61.34 O
ATOM 6 C5' A A 250 97.167 121.652 2.441 1.00 60.24 C
ATOM 7 C4' A A 250 97.988 120.434 2.075 1.00 60.22 C
ATOM 8 O4' A A 250 97.645 119.941 0.756 1.00 61.08 O
ATOM 9 C3' A A 250 99.488 120.650 2.030 1.00 61.02 C
ATOM 10 O3' A A 250 100.076 119.388 2.275 1.00 60.35 O
ATOM 11 C2' A A 250 99.728 121.007 0.568 1.00 61.45 C
ATOM 12 O2' A A 250 101.081 120.785 0.202 1.00 63.64 O
ATOM 13 C1' A A 250 98.769 120.020 -0.103 1.00 61.22 C
ATOM 14 N9 A A 250 98.260 120.366 -1.429 1.00 60.73 N
ATOM 15 C8 A A 250 98.329 119.612 -2.577 1.00 60.94 C
ATOM 16 N7 A A 250 97.720 120.153 -3.604 1.00 61.04 N
ATOM 17 C5 A A 250 97.232 121.355 -3.104 1.00 60.76 C
ATOM 18 C6 A A 250 96.495 122.400 -3.696 1.00 60.74 C
ATOM 19 N6 A A 250 96.128 122.419 -4.978 1.00 59.07 N
ATOM 20 N1 A A 250 96.152 123.446 -2.913 1.00 60.67 N
ATOM 21 C2 A A 250 96.543 123.443 -1.632 1.00 60.88 C
ATOM 22 N3 A A 250 97.250 122.530 -0.967 1.00 60.66 N
ATOM 23 C4 A A 250 97.564 121.500 -1.768 1.00 60.29 C
ATOM 24 P U A 251 101.180 119.239 3.409 1.00 61.76 P
ATOM 25 OP1 U A 251 101.950 120.509 3.450 1.00 61.64 O
ATOM 26 OP2 U A 251 101.888 117.956 3.205 1.00 61.53 O
ATOM 27 O5' U A 251 100.314 119.115 4.733 1.00 62.93 O
TER
ATOM 1 O3' G B 234 94.122 118.026 -7.567 1.00 68.55 O
ATOM 2 P A B 235 94.730 119.021 -8.684 1.00 69.88 P
ATOM 3 OP1 A B 235 94.340 118.506 -10.027 1.00 70.89 O
ATOM 4 OP2 A B 235 96.163 119.266 -8.385 1.00 69.03 O
ATOM 5 O5' A B 235 93.953 120.387 -8.455 1.00 68.77 O
ATOM 6 C5' A B 235 92.546 120.479 -8.680 1.00 67.14 C
ATOM 7 C4' A B 235 91.983 121.628 -7.884 1.00 67.00 C
ATOM 8 O4' A B 235 91.948 121.289 -6.467 1.00 67.61 O
ATOM 9 C3' A B 235 92.780 122.925 -7.980 1.00 67.17 C
ATOM 10 O3' A B 235 91.863 124.009 -7.893 1.00 67.55 O
ATOM 11 C2' A B 235 93.661 122.847 -6.734 1.00 67.10 C
ATOM 12 O2' A B 235 94.174 124.081 -6.275 1.00 66.47 O
ATOM 13 C1' A B 235 92.678 122.249 -5.731 1.00 67.56 C
ATOM 14 N9 A B 235 93.261 121.599 -4.552 1.00 68.27 N
ATOM 15 C8 A B 235 94.042 120.463 -4.501 1.00 68.92 C
ATOM 16 N7 A B 235 94.413 120.128 -3.289 1.00 68.98 N
ATOM 17 C5 A B 235 93.842 121.104 -2.484 1.00 68.67 C
ATOM 18 C6 A B 235 93.873 121.315 -1.094 1.00 68.49 C
ATOM 19 N6 A B 235 94.546 120.540 -0.244 1.00 67.88 N
ATOM 20 N1 A B 235 93.190 122.370 -0.601 1.00 68.79 N
ATOM 21 C2 A B 235 92.538 123.165 -1.456 1.00 69.00 C
ATOM 22 N3 A B 235 92.443 123.080 -2.783 1.00 68.69 N
ATOM 23 C4 A B 235 93.126 122.015 -3.245 1.00 68.55 C
ATOM 24 P A B 236 91.363 124.739 -9.237 1.00 69.11 P
ATOM 25 OP1 A B 236 92.416 124.541 -10.279 1.00 68.36 O
ATOM 26 OP2 A B 236 90.951 126.107 -8.853 1.00 68.62 O
ATOM 27 O5' A B 236 90.067 123.933 -9.696 1.00 68.02 O
TER
ATOM 2 P A A 250 97.044 123.476 4.376 1.00 60.80 P
ATOM 3 OP1 A A 250 97.221 123.429 5.842 1.00 62.47 O
ATOM 4 OP2 A A 250 97.692 124.560 3.610 1.00 61.81 O
ATOM 5 O5' A A 250 97.501 122.066 3.791 1.00 61.34 O
ATOM 6 C5' A A 250 97.167 121.652 2.441 1.00 60.24 C
ATOM 7 C4' A A 250 97.988 120.434 2.075 1.00 60.22 C
ATOM 8 O4' A A 250 97.645 119.941 0.756 1.00 61.08 O
ATOM 9 C3' A A 250 99.488 120.650 2.030 1.00 61.02 C
ATOM 10 O3' A A 250 100.076 119.388 2.275 1.00 60.35 O
ATOM 11 C2' A A 250 99.728 121.007 0.568 1.00 61.45 C
ATOM 12 O2' A A 250 101.081 120.785 0.202 1.00 63.64 O
ATOM 13 C1' A A 250 98.769 120.020 -0.103 1.00 61.22 C
ATOM 14 N9 A A 250 98.260 120.366 -1.429 1.00 60.73 N
ATOM 15 C8 A A 250 98.329 119.612 -2.577 1.00 60.94 C
ATOM 16 N7 A A 250 97.720 120.153 -3.604 1.00 61.04 N
ATOM 17 C5 A A 250 97.232 121.355 -3.104 1.00 60.76 C
ATOM 18 C6 A A 250 96.495 122.400 -3.696 1.00 60.74 C
ATOM 19 N6 A A 250 96.128 122.419 -4.978 1.00 59.07 N
ATOM 20 N1 A A 250 96.152 123.446 -2.913 1.00 60.67 N
ATOM 21 C2 A A 250 96.543 123.443 -1.632 1.00 60.88 C
ATOM 22 N3 A A 250 97.250 122.530 -0.967 1.00 60.66 N
ATOM 23 C4 A A 250 97.564 121.500 -1.768 1.00 60.29 C
ATOM 24 P U A 251 101.180 119.239 3.409 1.00 61.76 P
ATOM 25 OP1 U A 251 101.950 120.509 3.450 1.00 61.64 O
ATOM 26 OP2 U A 251 101.888 117.956 3.205 1.00 61.53 O
ATOM 27 O5' U A 251 100.314 119.115 4.733 1.00 62.93 O
TER
ATOM 1 O3' G B 234 94.122 118.026 -7.567 1.00 68.55 O
ATOM 2 P A B 235 94.730 119.021 -8.684 1.00 69.88 P
ATOM 3 OP1 A B 235 94.340 118.506 -10.027 1.00 70.89 O
ATOM 4 OP2 A B 235 96.163 119.266 -8.385 1.00 69.03 O
ATOM 5 O5' A B 235 93.953 120.387 -8.455 1.00 68.77 O
ATOM 6 C5' A B 235 92.546 120.479 -8.680 1.00 67.14 C
ATOM 7 C4' A B 235 91.983 121.628 -7.884 1.00 67.00 C
ATOM 8 O4' A B 235 91.948 121.289 -6.467 1.00 67.61 O
ATOM 9 C3' A B 235 92.780 122.925 -7.980 1.00 67.17 C
ATOM 10 O3' A B 235 91.863 124.009 -7.893 1.00 67.55 O
ATOM 11 C2' A B 235 93.661 122.847 -6.734 1.00 67.10 C
ATOM 12 O2' A B 235 94.174 124.081 -6.275 1.00 66.47 O
ATOM 13 C1' A B 235 92.678 122.249 -5.731 1.00 67.56 C
ATOM 14 N9 A B 235 93.261 121.599 -4.552 1.00 68.27 N
ATOM 15 C8 A B 235 94.042 120.463 -4.501 1.00 68.92 C
ATOM 16 N7 A B 235 94.413 120.128 -3.289 1.00 68.98 N
ATOM 17 C5 A B 235 93.842 121.104 -2.484 1.00 68.67 C
ATOM 18 C6 A B 235 93.873 121.315 -1.094 1.00 68.49 C
ATOM 19 N6 A B 235 94.546 120.540 -0.244 1.00 67.88 N
ATOM 20 N1 A B 235 93.190 122.370 -0.601 1.00 68.79 N
ATOM 21 C2 A B 235 92.538 123.165 -1.456 1.00 69.00 C
ATOM 22 N3 A B 235 92.443 123.080 -2.783 1.00 68.69 N
ATOM 23 C4 A B 235 93.126 122.015 -3.245 1.00 68.55 C
ATOM 24 P A B 236 91.363 124.739 -9.237 1.00 69.11 P
ATOM 25 OP1 A B 236 92.416 124.541 -10.279 1.00 68.36 O
ATOM 26 OP2 A B 236 90.951 126.107 -8.853 1.00 68.62 O
ATOM 27 O5' A B 236 90.067 123.933 -9.696 1.00 68.02 O
TER
Atoms:
OP1: (97.221,123.429,5.842)
OP2: (97.692,124.560,3.610)
C3': (99.488,120.650,2.030)
C1': (98.769,120.020,-0.103)
C5': (97.167,121.652,2.441)
O4': (97.645,119.941,0.756)
C8: (98.329,119.612,-2.577)
O2': (101.081,120.785,0.202)
C6: (96.495,122.400,-3.696)
C5: (97.232,121.355,-3.104)
C4: (97.564,121.500,-1.768)
P: (97.044,123.476,4.376)
C4': (97.988,120.434,2.075)
C2': (99.728,121.007,0.568)
C2: (96.543,123.443,-1.632)
N1: (96.152,123.446,-2.913)
N3: (97.250,122.530,-0.967)
N6: (96.128,122.419,-4.978)
N7: (97.720,120.153,-3.604)
N9: (98.260,120.366,-1.429)
O5': (97.501,122.066,3.791)
O3': (100.076,119.388,2.275)
OP2: (97.692,124.560,3.610)
C3': (99.488,120.650,2.030)
C1': (98.769,120.020,-0.103)
C5': (97.167,121.652,2.441)
O4': (97.645,119.941,0.756)
C8: (98.329,119.612,-2.577)
O2': (101.081,120.785,0.202)
C6: (96.495,122.400,-3.696)
C5: (97.232,121.355,-3.104)
C4: (97.564,121.500,-1.768)
P: (97.044,123.476,4.376)
C4': (97.988,120.434,2.075)
C2': (99.728,121.007,0.568)
C2: (96.543,123.443,-1.632)
N1: (96.152,123.446,-2.913)
N3: (97.250,122.530,-0.967)
N6: (96.128,122.419,-4.978)
N7: (97.720,120.153,-3.604)
N9: (98.260,120.366,-1.429)
O5': (97.501,122.066,3.791)
O3': (100.076,119.388,2.275)
OP1: (94.340,118.506,-10.027)
OP2: (96.163,119.266,-8.385)
C3': (92.780,122.925,-7.980)
C1': (92.678,122.249,-5.731)
C5': (92.546,120.479,-8.680)
O4': (91.948,121.289,-6.467)
C8: (94.042,120.463,-4.501)
O2': (94.174,124.081,-6.275)
C6: (93.873,121.315,-1.094)
C5: (93.842,121.104,-2.484)
C4: (93.126,122.015,-3.245)
P: (94.730,119.021,-8.684)
C4': (91.983,121.628,-7.884)
C2': (93.661,122.847,-6.734)
C2: (92.538,123.165,-1.456)
N1: (93.190,122.370,-0.601)
N3: (92.443,123.080,-2.783)
N6: (94.546,120.540,-0.244)
N7: (94.413,120.128,-3.289)
N9: (93.261,121.599,-4.552)
O5': (93.953,120.387,-8.455)
O3': (91.863,124.009,-7.893)
OP2: (96.163,119.266,-8.385)
C3': (92.780,122.925,-7.980)
C1': (92.678,122.249,-5.731)
C5': (92.546,120.479,-8.680)
O4': (91.948,121.289,-6.467)
C8: (94.042,120.463,-4.501)
O2': (94.174,124.081,-6.275)
C6: (93.873,121.315,-1.094)
C5: (93.842,121.104,-2.484)
C4: (93.126,122.015,-3.245)
P: (94.730,119.021,-8.684)
C4': (91.983,121.628,-7.884)
C2': (93.661,122.847,-6.734)
C2: (92.538,123.165,-1.456)
N1: (93.190,122.370,-0.601)
N3: (92.443,123.080,-2.783)
N6: (94.546,120.540,-0.244)
N7: (94.413,120.128,-3.289)
N9: (93.261,121.599,-4.552)
O5': (93.953,120.387,-8.455)
O3': (91.863,124.009,-7.893)
Image (generated by PyMOL):