Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A63:A46
Extra
PDB:
ATOM 1 O3' C A 62 1.309 60.242 11.170 1.00 28.36 O
ATOM 2 P C A 63 2.492 60.993 11.981 1.00 32.71 P
ATOM 3 OP1 C A 63 2.708 62.242 11.220 1.00 32.76 O
ATOM 4 OP2 C A 63 3.647 60.080 12.154 1.00 33.99 O
ATOM 5 O5' C A 63 1.842 61.243 13.421 1.00 29.34 O
ATOM 6 C5' C A 63 0.707 62.074 13.601 1.00 33.34 C
ATOM 7 C4' C A 63 0.050 61.825 14.934 1.00 31.02 C
ATOM 8 O4' C A 63 -0.224 60.403 15.074 1.00 33.15 O
ATOM 9 C3' C A 63 0.849 62.152 16.190 1.00 31.74 C
ATOM 10 O3' C A 63 0.887 63.532 16.524 1.00 29.06 O
ATOM 11 C2' C A 63 0.144 61.306 17.246 1.00 31.78 C
ATOM 12 O2' C A 63 -1.054 61.930 17.685 1.00 36.51 O
ATOM 13 C1' C A 63 -0.229 60.057 16.447 1.00 29.62 C
ATOM 14 N1 C A 63 0.689 58.960 16.818 1.00 30.43 N
ATOM 15 C2 C A 63 0.418 58.328 18.032 1.00 31.74 C
ATOM 16 O2 C A 63 -0.570 58.708 18.685 1.00 31.98 O
ATOM 17 N3 C A 63 1.226 57.332 18.461 1.00 30.50 N
ATOM 18 C4 C A 63 2.267 56.957 17.715 1.00 27.89 C
ATOM 19 N4 C A 63 3.029 55.963 18.184 1.00 28.84 N
ATOM 20 C5 C A 63 2.578 57.589 16.472 1.00 29.12 C
ATOM 21 C6 C A 63 1.770 58.585 16.065 1.00 31.22 C
ATOM 22 P A A 64 2.159 64.434 16.103 1.00 37.30 P
ATOM 23 OP1 A A 64 1.709 65.115 14.877 1.00 35.95 O
ATOM 24 OP2 A A 64 3.379 63.600 16.035 1.00 30.77 O
ATOM 25 O5' A A 64 2.305 65.443 17.331 1.00 30.41 O
TER
ATOM 1 O3' A B 45 7.667 53.988 19.292 1.00 25.75 O
ATOM 2 P A B 46 6.080 54.078 19.107 1.00 26.29 P
ATOM 3 OP1 A B 46 5.582 52.702 19.320 1.00 28.02 O
ATOM 4 OP2 A B 46 5.820 54.772 17.841 1.00 26.61 O
ATOM 5 O5' A B 46 5.577 54.982 20.313 1.00 25.13 O
ATOM 6 C5' A B 46 5.834 54.665 21.676 1.00 25.08 C
ATOM 7 C4' A B 46 5.504 55.853 22.552 1.00 25.54 C
ATOM 8 O4' A B 46 6.353 56.974 22.195 1.00 26.30 O
ATOM 9 C3' A B 46 4.099 56.404 22.367 1.00 23.27 C
ATOM 10 O3' A B 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 11 C2' A B 46 4.241 57.850 22.818 1.00 26.07 C
ATOM 12 O2' A B 46 4.320 57.914 24.236 1.00 27.77 O
ATOM 13 C1' A B 46 5.614 58.182 22.235 1.00 25.93 C
ATOM 14 N9 A B 46 5.473 58.694 20.858 1.00 26.51 N
ATOM 15 C8 A B 46 5.611 57.997 19.683 1.00 26.23 C
ATOM 16 N7 A B 46 5.395 58.729 18.608 1.00 24.72 N
ATOM 17 C5 A B 46 5.104 59.988 19.103 1.00 26.62 C
ATOM 18 C6 A B 46 4.796 61.207 18.465 1.00 27.31 C
ATOM 19 N6 A B 46 4.726 61.354 17.133 1.00 27.72 N
ATOM 20 N1 A B 46 4.554 62.271 19.252 1.00 26.54 N
ATOM 21 C2 A B 46 4.624 62.123 20.579 1.00 26.89 C
ATOM 22 N3 A B 46 4.910 61.037 21.289 1.00 28.31 N
ATOM 23 C4 A B 46 5.146 59.984 20.487 1.00 26.59 C
ATOM 24 P A B 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 25 OP1 A B 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 26 OP2 A B 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 27 O5' A B 47 0.985 56.542 22.344 1.00 28.52 O
TER
ATOM 2 P C A 63 2.492 60.993 11.981 1.00 32.71 P
ATOM 3 OP1 C A 63 2.708 62.242 11.220 1.00 32.76 O
ATOM 4 OP2 C A 63 3.647 60.080 12.154 1.00 33.99 O
ATOM 5 O5' C A 63 1.842 61.243 13.421 1.00 29.34 O
ATOM 6 C5' C A 63 0.707 62.074 13.601 1.00 33.34 C
ATOM 7 C4' C A 63 0.050 61.825 14.934 1.00 31.02 C
ATOM 8 O4' C A 63 -0.224 60.403 15.074 1.00 33.15 O
ATOM 9 C3' C A 63 0.849 62.152 16.190 1.00 31.74 C
ATOM 10 O3' C A 63 0.887 63.532 16.524 1.00 29.06 O
ATOM 11 C2' C A 63 0.144 61.306 17.246 1.00 31.78 C
ATOM 12 O2' C A 63 -1.054 61.930 17.685 1.00 36.51 O
ATOM 13 C1' C A 63 -0.229 60.057 16.447 1.00 29.62 C
ATOM 14 N1 C A 63 0.689 58.960 16.818 1.00 30.43 N
ATOM 15 C2 C A 63 0.418 58.328 18.032 1.00 31.74 C
ATOM 16 O2 C A 63 -0.570 58.708 18.685 1.00 31.98 O
ATOM 17 N3 C A 63 1.226 57.332 18.461 1.00 30.50 N
ATOM 18 C4 C A 63 2.267 56.957 17.715 1.00 27.89 C
ATOM 19 N4 C A 63 3.029 55.963 18.184 1.00 28.84 N
ATOM 20 C5 C A 63 2.578 57.589 16.472 1.00 29.12 C
ATOM 21 C6 C A 63 1.770 58.585 16.065 1.00 31.22 C
ATOM 22 P A A 64 2.159 64.434 16.103 1.00 37.30 P
ATOM 23 OP1 A A 64 1.709 65.115 14.877 1.00 35.95 O
ATOM 24 OP2 A A 64 3.379 63.600 16.035 1.00 30.77 O
ATOM 25 O5' A A 64 2.305 65.443 17.331 1.00 30.41 O
TER
ATOM 1 O3' A B 45 7.667 53.988 19.292 1.00 25.75 O
ATOM 2 P A B 46 6.080 54.078 19.107 1.00 26.29 P
ATOM 3 OP1 A B 46 5.582 52.702 19.320 1.00 28.02 O
ATOM 4 OP2 A B 46 5.820 54.772 17.841 1.00 26.61 O
ATOM 5 O5' A B 46 5.577 54.982 20.313 1.00 25.13 O
ATOM 6 C5' A B 46 5.834 54.665 21.676 1.00 25.08 C
ATOM 7 C4' A B 46 5.504 55.853 22.552 1.00 25.54 C
ATOM 8 O4' A B 46 6.353 56.974 22.195 1.00 26.30 O
ATOM 9 C3' A B 46 4.099 56.404 22.367 1.00 23.27 C
ATOM 10 O3' A B 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 11 C2' A B 46 4.241 57.850 22.818 1.00 26.07 C
ATOM 12 O2' A B 46 4.320 57.914 24.236 1.00 27.77 O
ATOM 13 C1' A B 46 5.614 58.182 22.235 1.00 25.93 C
ATOM 14 N9 A B 46 5.473 58.694 20.858 1.00 26.51 N
ATOM 15 C8 A B 46 5.611 57.997 19.683 1.00 26.23 C
ATOM 16 N7 A B 46 5.395 58.729 18.608 1.00 24.72 N
ATOM 17 C5 A B 46 5.104 59.988 19.103 1.00 26.62 C
ATOM 18 C6 A B 46 4.796 61.207 18.465 1.00 27.31 C
ATOM 19 N6 A B 46 4.726 61.354 17.133 1.00 27.72 N
ATOM 20 N1 A B 46 4.554 62.271 19.252 1.00 26.54 N
ATOM 21 C2 A B 46 4.624 62.123 20.579 1.00 26.89 C
ATOM 22 N3 A B 46 4.910 61.037 21.289 1.00 28.31 N
ATOM 23 C4 A B 46 5.146 59.984 20.487 1.00 26.59 C
ATOM 24 P A B 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 25 OP1 A B 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 26 OP2 A B 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 27 O5' A B 47 0.985 56.542 22.344 1.00 28.52 O
TER
Atoms:
C2: (0.418,58.328,18.032)
OP1: (2.708,62.242,11.220)
OP2: (3.647,60.080,12.154)
C4: (2.267,56.957,17.715)
O5': (1.842,61.243,13.421)
C3': (0.849,62.152,16.190)
C1': (-0.229,60.057,16.447)
O4': (-0.224,60.403,15.074)
C5': (0.707,62.074,13.601)
P: (2.492,60.993,11.981)
O2: (-0.570,58.708,18.685)
C4': (0.050,61.825,14.934)
C2': (0.144,61.306,17.246)
O2': (-1.054,61.930,17.685)
N1: (0.689,58.960,16.818)
N3: (1.226,57.332,18.461)
N4: (3.029,55.963,18.184)
C6: (1.770,58.585,16.065)
C5: (2.578,57.589,16.472)
O3': (0.887,63.532,16.524)
OP1: (2.708,62.242,11.220)
OP2: (3.647,60.080,12.154)
C4: (2.267,56.957,17.715)
O5': (1.842,61.243,13.421)
C3': (0.849,62.152,16.190)
C1': (-0.229,60.057,16.447)
O4': (-0.224,60.403,15.074)
C5': (0.707,62.074,13.601)
P: (2.492,60.993,11.981)
O2: (-0.570,58.708,18.685)
C4': (0.050,61.825,14.934)
C2': (0.144,61.306,17.246)
O2': (-1.054,61.930,17.685)
N1: (0.689,58.960,16.818)
N3: (1.226,57.332,18.461)
N4: (3.029,55.963,18.184)
C6: (1.770,58.585,16.065)
C5: (2.578,57.589,16.472)
O3': (0.887,63.532,16.524)
OP1: (5.582,52.702,19.320)
OP2: (5.820,54.772,17.841)
C3': (4.099,56.404,22.367)
C1': (5.614,58.182,22.235)
C5': (5.834,54.665,21.676)
O4': (6.353,56.974,22.195)
C8: (5.611,57.997,19.683)
O2': (4.320,57.914,24.236)
C6: (4.796,61.207,18.465)
C5: (5.104,59.988,19.103)
C4: (5.146,59.984,20.487)
P: (6.080,54.078,19.107)
C4': (5.504,55.853,22.552)
C2': (4.241,57.850,22.818)
C2: (4.624,62.123,20.579)
N1: (4.554,62.271,19.252)
N3: (4.910,61.037,21.289)
N6: (4.726,61.354,17.133)
N7: (5.395,58.729,18.608)
N9: (5.473,58.694,20.858)
O5': (5.577,54.982,20.313)
O3': (3.152,55.675,23.111)
OP2: (5.820,54.772,17.841)
C3': (4.099,56.404,22.367)
C1': (5.614,58.182,22.235)
C5': (5.834,54.665,21.676)
O4': (6.353,56.974,22.195)
C8: (5.611,57.997,19.683)
O2': (4.320,57.914,24.236)
C6: (4.796,61.207,18.465)
C5: (5.104,59.988,19.103)
C4: (5.146,59.984,20.487)
P: (6.080,54.078,19.107)
C4': (5.504,55.853,22.552)
C2': (4.241,57.850,22.818)
C2: (4.624,62.123,20.579)
N1: (4.554,62.271,19.252)
N3: (4.910,61.037,21.289)
N6: (4.726,61.354,17.133)
N7: (5.395,58.729,18.608)
N9: (5.473,58.694,20.858)
O5': (5.577,54.982,20.313)
O3': (3.152,55.675,23.111)
Image (generated by PyMOL):