Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A2017:A616
Extra
PDB:
ATOM 1 O3' G A2016 44.059 108.539 104.279 1.00 27.36 O
ATOM 2 P C A2017 45.300 107.543 104.117 1.00 28.39 P
ATOM 3 OP1 C A2017 44.944 106.467 103.192 1.00 27.89 O
ATOM 4 OP2 C A2017 45.818 107.221 105.456 1.00 28.40 O
ATOM 5 O5' C A2017 46.378 108.419 103.383 1.00 26.97 O
ATOM 6 C5' C A2017 47.730 108.061 103.451 1.00 30.92 C
ATOM 7 C4' C A2017 48.522 108.965 102.564 1.00 35.33 C
ATOM 8 O4' C A2017 48.314 108.628 101.187 1.00 36.21 O
ATOM 9 C3' C A2017 48.201 110.450 102.611 1.00 36.33 C
ATOM 10 O3' C A2017 48.901 111.066 103.682 1.00 38.89 O
ATOM 11 C2' C A2017 48.759 110.965 101.286 1.00 36.72 C
ATOM 12 O2' C A2017 50.104 111.343 101.434 1.00 38.48 O
ATOM 13 C1' C A2017 48.749 109.709 100.416 1.00 36.75 C
ATOM 14 N1 C A2017 48.004 109.751 99.160 1.00 36.41 N
ATOM 15 C2 C A2017 48.720 109.584 97.986 1.00 37.71 C
ATOM 16 O2 C A2017 49.941 109.407 98.056 1.00 40.12 O
ATOM 17 N3 C A2017 48.077 109.622 96.805 1.00 37.25 N
ATOM 18 C4 C A2017 46.762 109.821 96.774 1.00 36.46 C
ATOM 19 N4 C A2017 46.171 109.854 95.585 1.00 34.33 N
ATOM 20 C5 C A2017 45.998 109.996 97.966 1.00 35.69 C
ATOM 21 C6 C A2017 46.656 109.951 99.127 1.00 35.05 C
ATOM 22 P G A2018 48.091 111.741 104.902 1.00 43.34 P
ATOM 23 OP1 G A2018 47.315 110.670 105.573 1.00 41.56 O
ATOM 24 OP2 G A2018 47.410 112.995 104.465 1.00 41.08 O
ATOM 25 O5' G A2018 49.248 112.215 105.877 1.00 40.70 O
TER
ATOM 1 O3' G B 615 43.187 106.742 96.370 1.00 29.22 O
ATOM 2 P A B 616 42.583 107.591 95.161 1.00 27.83 P
ATOM 3 OP1 A B 616 41.126 107.547 95.327 1.00 26.59 O
ATOM 4 OP2 A B 616 43.191 107.147 93.896 1.00 27.82 O
ATOM 5 O5' A B 616 43.065 109.061 95.499 1.00 28.99 O
ATOM 6 C5' A B 616 42.520 109.735 96.623 1.00 31.46 C
ATOM 7 C4' A B 616 42.549 111.220 96.424 1.00 32.11 C
ATOM 8 O4' A B 616 43.931 111.657 96.407 1.00 34.12 O
ATOM 9 C3' A B 616 41.884 111.799 95.187 1.00 31.78 C
ATOM 10 O3' A B 616 41.175 112.966 95.587 1.00 30.19 O
ATOM 11 C2' A B 616 43.088 112.144 94.304 1.00 33.68 C
ATOM 12 O2' A B 616 42.871 113.212 93.410 1.00 35.87 O
ATOM 13 C1' A B 616 44.142 112.537 95.336 1.00 34.36 C
ATOM 14 N9 A B 616 45.534 112.382 94.912 1.00 36.10 N
ATOM 15 C8 A B 616 46.005 111.901 93.717 1.00 36.04 C
ATOM 16 N7 A B 616 47.314 111.835 93.653 1.00 35.94 N
ATOM 17 C5 A B 616 47.737 112.314 94.886 1.00 35.30 C
ATOM 18 C6 A B 616 49.011 112.472 95.449 1.00 34.80 C
ATOM 19 N6 A B 616 50.133 112.182 94.801 1.00 33.99 N
ATOM 20 N1 A B 616 49.094 112.950 96.711 1.00 33.85 N
ATOM 21 C2 A B 616 47.962 113.260 97.350 1.00 36.07 C
ATOM 22 N3 A B 616 46.699 113.163 96.928 1.00 36.89 N
ATOM 23 C4 A B 616 46.654 112.671 95.670 1.00 36.67 C
ATOM 24 P A B 617 39.599 112.882 95.901 1.00 28.17 P
ATOM 25 OP1 A B 617 39.330 111.755 96.809 1.00 27.86 O
ATOM 26 OP2 A B 617 38.863 112.989 94.636 1.00 26.52 O
ATOM 27 O5' A B 617 39.286 114.225 96.689 1.00 27.94 O
TER
ATOM 2 P C A2017 45.300 107.543 104.117 1.00 28.39 P
ATOM 3 OP1 C A2017 44.944 106.467 103.192 1.00 27.89 O
ATOM 4 OP2 C A2017 45.818 107.221 105.456 1.00 28.40 O
ATOM 5 O5' C A2017 46.378 108.419 103.383 1.00 26.97 O
ATOM 6 C5' C A2017 47.730 108.061 103.451 1.00 30.92 C
ATOM 7 C4' C A2017 48.522 108.965 102.564 1.00 35.33 C
ATOM 8 O4' C A2017 48.314 108.628 101.187 1.00 36.21 O
ATOM 9 C3' C A2017 48.201 110.450 102.611 1.00 36.33 C
ATOM 10 O3' C A2017 48.901 111.066 103.682 1.00 38.89 O
ATOM 11 C2' C A2017 48.759 110.965 101.286 1.00 36.72 C
ATOM 12 O2' C A2017 50.104 111.343 101.434 1.00 38.48 O
ATOM 13 C1' C A2017 48.749 109.709 100.416 1.00 36.75 C
ATOM 14 N1 C A2017 48.004 109.751 99.160 1.00 36.41 N
ATOM 15 C2 C A2017 48.720 109.584 97.986 1.00 37.71 C
ATOM 16 O2 C A2017 49.941 109.407 98.056 1.00 40.12 O
ATOM 17 N3 C A2017 48.077 109.622 96.805 1.00 37.25 N
ATOM 18 C4 C A2017 46.762 109.821 96.774 1.00 36.46 C
ATOM 19 N4 C A2017 46.171 109.854 95.585 1.00 34.33 N
ATOM 20 C5 C A2017 45.998 109.996 97.966 1.00 35.69 C
ATOM 21 C6 C A2017 46.656 109.951 99.127 1.00 35.05 C
ATOM 22 P G A2018 48.091 111.741 104.902 1.00 43.34 P
ATOM 23 OP1 G A2018 47.315 110.670 105.573 1.00 41.56 O
ATOM 24 OP2 G A2018 47.410 112.995 104.465 1.00 41.08 O
ATOM 25 O5' G A2018 49.248 112.215 105.877 1.00 40.70 O
TER
ATOM 1 O3' G B 615 43.187 106.742 96.370 1.00 29.22 O
ATOM 2 P A B 616 42.583 107.591 95.161 1.00 27.83 P
ATOM 3 OP1 A B 616 41.126 107.547 95.327 1.00 26.59 O
ATOM 4 OP2 A B 616 43.191 107.147 93.896 1.00 27.82 O
ATOM 5 O5' A B 616 43.065 109.061 95.499 1.00 28.99 O
ATOM 6 C5' A B 616 42.520 109.735 96.623 1.00 31.46 C
ATOM 7 C4' A B 616 42.549 111.220 96.424 1.00 32.11 C
ATOM 8 O4' A B 616 43.931 111.657 96.407 1.00 34.12 O
ATOM 9 C3' A B 616 41.884 111.799 95.187 1.00 31.78 C
ATOM 10 O3' A B 616 41.175 112.966 95.587 1.00 30.19 O
ATOM 11 C2' A B 616 43.088 112.144 94.304 1.00 33.68 C
ATOM 12 O2' A B 616 42.871 113.212 93.410 1.00 35.87 O
ATOM 13 C1' A B 616 44.142 112.537 95.336 1.00 34.36 C
ATOM 14 N9 A B 616 45.534 112.382 94.912 1.00 36.10 N
ATOM 15 C8 A B 616 46.005 111.901 93.717 1.00 36.04 C
ATOM 16 N7 A B 616 47.314 111.835 93.653 1.00 35.94 N
ATOM 17 C5 A B 616 47.737 112.314 94.886 1.00 35.30 C
ATOM 18 C6 A B 616 49.011 112.472 95.449 1.00 34.80 C
ATOM 19 N6 A B 616 50.133 112.182 94.801 1.00 33.99 N
ATOM 20 N1 A B 616 49.094 112.950 96.711 1.00 33.85 N
ATOM 21 C2 A B 616 47.962 113.260 97.350 1.00 36.07 C
ATOM 22 N3 A B 616 46.699 113.163 96.928 1.00 36.89 N
ATOM 23 C4 A B 616 46.654 112.671 95.670 1.00 36.67 C
ATOM 24 P A B 617 39.599 112.882 95.901 1.00 28.17 P
ATOM 25 OP1 A B 617 39.330 111.755 96.809 1.00 27.86 O
ATOM 26 OP2 A B 617 38.863 112.989 94.636 1.00 26.52 O
ATOM 27 O5' A B 617 39.286 114.225 96.689 1.00 27.94 O
TER
Atoms:
C2: (48.720,109.584,97.986)
OP1: (44.944,106.467,103.192)
OP2: (45.818,107.221,105.456)
C4: (46.762,109.821,96.774)
O5': (46.378,108.419,103.383)
C3': (48.201,110.450,102.611)
C1': (48.749,109.709,100.416)
O4': (48.314,108.628,101.187)
C5': (47.730,108.061,103.451)
P: (45.300,107.543,104.117)
O2: (49.941,109.407,98.056)
C4': (48.522,108.965,102.564)
C2': (48.759,110.965,101.286)
O2': (50.104,111.343,101.434)
N1: (48.004,109.751,99.160)
N3: (48.077,109.622,96.805)
N4: (46.171,109.854,95.585)
C6: (46.656,109.951,99.127)
C5: (45.998,109.996,97.966)
O3': (48.901,111.066,103.682)
OP1: (44.944,106.467,103.192)
OP2: (45.818,107.221,105.456)
C4: (46.762,109.821,96.774)
O5': (46.378,108.419,103.383)
C3': (48.201,110.450,102.611)
C1': (48.749,109.709,100.416)
O4': (48.314,108.628,101.187)
C5': (47.730,108.061,103.451)
P: (45.300,107.543,104.117)
O2: (49.941,109.407,98.056)
C4': (48.522,108.965,102.564)
C2': (48.759,110.965,101.286)
O2': (50.104,111.343,101.434)
N1: (48.004,109.751,99.160)
N3: (48.077,109.622,96.805)
N4: (46.171,109.854,95.585)
C6: (46.656,109.951,99.127)
C5: (45.998,109.996,97.966)
O3': (48.901,111.066,103.682)
OP1: (41.126,107.547,95.327)
OP2: (43.191,107.147,93.896)
C3': (41.884,111.799,95.187)
C1': (44.142,112.537,95.336)
C5': (42.520,109.735,96.623)
O4': (43.931,111.657,96.407)
C8: (46.005,111.901,93.717)
O2': (42.871,113.212,93.410)
C6: (49.011,112.472,95.449)
C5: (47.737,112.314,94.886)
C4: (46.654,112.671,95.670)
P: (42.583,107.591,95.161)
C4': (42.549,111.220,96.424)
C2': (43.088,112.144,94.304)
C2: (47.962,113.260,97.350)
N1: (49.094,112.950,96.711)
N3: (46.699,113.163,96.928)
N6: (50.133,112.182,94.801)
N7: (47.314,111.835,93.653)
N9: (45.534,112.382,94.912)
O5': (43.065,109.061,95.499)
O3': (41.175,112.966,95.587)
OP2: (43.191,107.147,93.896)
C3': (41.884,111.799,95.187)
C1': (44.142,112.537,95.336)
C5': (42.520,109.735,96.623)
O4': (43.931,111.657,96.407)
C8: (46.005,111.901,93.717)
O2': (42.871,113.212,93.410)
C6: (49.011,112.472,95.449)
C5: (47.737,112.314,94.886)
C4: (46.654,112.671,95.670)
P: (42.583,107.591,95.161)
C4': (42.549,111.220,96.424)
C2': (43.088,112.144,94.304)
C2: (47.962,113.260,97.350)
N1: (49.094,112.950,96.711)
N3: (46.699,113.163,96.928)
N6: (50.133,112.182,94.801)
N7: (47.314,111.835,93.653)
N9: (45.534,112.382,94.912)
O5': (43.065,109.061,95.499)
O3': (41.175,112.966,95.587)
Image (generated by PyMOL):