Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y39:C13:C19
Extra
PDB:
ATOM 1 O3' G A 12 107.066 81.823 8.997 1.00 65.19 O
ATOM 2 P C A 13 108.565 81.840 9.544 1.00 64.71 P
ATOM 3 OP1 C A 13 108.994 80.421 9.645 1.00 63.61 O
ATOM 4 OP2 C A 13 108.582 82.719 10.752 1.00 63.60 O
ATOM 5 O5' C A 13 109.365 82.576 8.379 1.00 62.26 O
ATOM 6 C5' C A 13 109.344 82.055 7.061 1.00 60.33 C
ATOM 7 C4' C A 13 110.056 82.983 6.112 1.00 59.86 C
ATOM 8 O4' C A 13 109.391 84.267 6.089 1.00 58.17 O
ATOM 9 C3' C A 13 111.487 83.367 6.444 1.00 60.90 C
ATOM 10 O3' C A 13 112.394 82.340 6.077 1.00 63.52 O
ATOM 11 C2' C A 13 111.675 84.575 5.544 1.00 58.79 C
ATOM 12 O2' C A 13 111.832 84.190 4.197 1.00 59.63 O
ATOM 13 C1' C A 13 110.319 85.257 5.690 1.00 56.75 C
ATOM 14 N1 C A 13 110.360 86.323 6.694 1.00 53.54 N
ATOM 15 C2 C A 13 110.793 87.588 6.278 1.00 53.56 C
ATOM 16 O2 C A 13 111.116 87.744 5.085 1.00 54.07 O
ATOM 17 N3 C A 13 110.857 88.599 7.172 1.00 52.23 N
ATOM 18 C4 C A 13 110.515 88.380 8.443 1.00 52.09 C
ATOM 19 N4 C A 13 110.610 89.406 9.294 1.00 51.72 N
ATOM 20 C5 C A 13 110.065 87.097 8.896 1.00 50.89 C
ATOM 21 C6 C A 13 110.001 86.108 7.993 1.00 50.98 C
ATOM 22 P U A 14 113.807 82.219 6.829 1.00 64.45 P
ATOM 23 OP1 U A 14 114.503 81.089 6.157 1.00 64.20 O
ATOM 24 OP2 U A 14 113.587 82.183 8.301 1.00 64.21 O
ATOM 25 O5' U A 14 114.544 83.590 6.513 1.00 61.52 O
TER
ATOM 1 O3' A B 18 111.204 92.240 12.414 1.00 64.75 O
ATOM 2 P A B 19 109.723 91.622 12.381 1.00 64.46 P
ATOM 3 OP1 A B 19 109.850 90.165 12.111 1.00 65.11 O
ATOM 4 OP2 A B 19 108.872 92.461 11.489 1.00 66.21 O
ATOM 5 O5' A B 19 109.210 91.793 13.880 1.00 64.94 O
ATOM 6 C5' A B 19 108.739 93.051 14.355 1.00 66.63 C
ATOM 7 C4' A B 19 107.762 92.838 15.482 1.00 67.97 C
ATOM 8 O4' A B 19 108.437 92.136 16.561 1.00 69.72 O
ATOM 9 C3' A B 19 107.163 94.093 16.107 1.00 67.72 C
ATOM 10 O3' A B 19 105.842 93.789 16.549 1.00 67.04 O
ATOM 11 C2' A B 19 108.081 94.328 17.296 1.00 68.44 C
ATOM 12 O2' A B 19 107.521 95.077 18.354 1.00 67.05 O
ATOM 13 C1' A B 19 108.344 92.896 17.744 1.00 70.51 C
ATOM 14 N9 A B 19 109.613 92.807 18.450 1.00 74.12 N
ATOM 15 C8 A B 19 110.846 93.209 18.005 1.00 75.47 C
ATOM 16 N7 A B 19 111.794 93.079 18.894 1.00 76.86 N
ATOM 17 C5 A B 19 111.145 92.536 19.993 1.00 76.94 C
ATOM 18 C6 A B 19 111.596 92.172 21.263 1.00 77.77 C
ATOM 19 N6 A B 19 112.861 92.321 21.663 1.00 77.78 N
ATOM 20 N1 A B 19 110.694 91.650 22.125 1.00 77.88 N
ATOM 21 C2 A B 19 109.426 91.517 21.721 1.00 76.86 C
ATOM 22 N3 A B 19 108.881 91.832 20.554 1.00 76.34 N
ATOM 23 C4 A B 19 109.806 92.344 19.725 1.00 75.75 C
ATOM 24 P G B 20 104.767 94.969 16.749 1.00 65.96 P
ATOM 25 OP1 G B 20 105.368 96.048 17.577 1.00 66.12 O
ATOM 26 OP2 G B 20 103.509 94.325 17.194 1.00 66.34 O
ATOM 27 O5' G B 20 104.556 95.554 15.285 1.00 65.61 O
TER
ATOM 2 P C A 13 108.565 81.840 9.544 1.00 64.71 P
ATOM 3 OP1 C A 13 108.994 80.421 9.645 1.00 63.61 O
ATOM 4 OP2 C A 13 108.582 82.719 10.752 1.00 63.60 O
ATOM 5 O5' C A 13 109.365 82.576 8.379 1.00 62.26 O
ATOM 6 C5' C A 13 109.344 82.055 7.061 1.00 60.33 C
ATOM 7 C4' C A 13 110.056 82.983 6.112 1.00 59.86 C
ATOM 8 O4' C A 13 109.391 84.267 6.089 1.00 58.17 O
ATOM 9 C3' C A 13 111.487 83.367 6.444 1.00 60.90 C
ATOM 10 O3' C A 13 112.394 82.340 6.077 1.00 63.52 O
ATOM 11 C2' C A 13 111.675 84.575 5.544 1.00 58.79 C
ATOM 12 O2' C A 13 111.832 84.190 4.197 1.00 59.63 O
ATOM 13 C1' C A 13 110.319 85.257 5.690 1.00 56.75 C
ATOM 14 N1 C A 13 110.360 86.323 6.694 1.00 53.54 N
ATOM 15 C2 C A 13 110.793 87.588 6.278 1.00 53.56 C
ATOM 16 O2 C A 13 111.116 87.744 5.085 1.00 54.07 O
ATOM 17 N3 C A 13 110.857 88.599 7.172 1.00 52.23 N
ATOM 18 C4 C A 13 110.515 88.380 8.443 1.00 52.09 C
ATOM 19 N4 C A 13 110.610 89.406 9.294 1.00 51.72 N
ATOM 20 C5 C A 13 110.065 87.097 8.896 1.00 50.89 C
ATOM 21 C6 C A 13 110.001 86.108 7.993 1.00 50.98 C
ATOM 22 P U A 14 113.807 82.219 6.829 1.00 64.45 P
ATOM 23 OP1 U A 14 114.503 81.089 6.157 1.00 64.20 O
ATOM 24 OP2 U A 14 113.587 82.183 8.301 1.00 64.21 O
ATOM 25 O5' U A 14 114.544 83.590 6.513 1.00 61.52 O
TER
ATOM 1 O3' A B 18 111.204 92.240 12.414 1.00 64.75 O
ATOM 2 P A B 19 109.723 91.622 12.381 1.00 64.46 P
ATOM 3 OP1 A B 19 109.850 90.165 12.111 1.00 65.11 O
ATOM 4 OP2 A B 19 108.872 92.461 11.489 1.00 66.21 O
ATOM 5 O5' A B 19 109.210 91.793 13.880 1.00 64.94 O
ATOM 6 C5' A B 19 108.739 93.051 14.355 1.00 66.63 C
ATOM 7 C4' A B 19 107.762 92.838 15.482 1.00 67.97 C
ATOM 8 O4' A B 19 108.437 92.136 16.561 1.00 69.72 O
ATOM 9 C3' A B 19 107.163 94.093 16.107 1.00 67.72 C
ATOM 10 O3' A B 19 105.842 93.789 16.549 1.00 67.04 O
ATOM 11 C2' A B 19 108.081 94.328 17.296 1.00 68.44 C
ATOM 12 O2' A B 19 107.521 95.077 18.354 1.00 67.05 O
ATOM 13 C1' A B 19 108.344 92.896 17.744 1.00 70.51 C
ATOM 14 N9 A B 19 109.613 92.807 18.450 1.00 74.12 N
ATOM 15 C8 A B 19 110.846 93.209 18.005 1.00 75.47 C
ATOM 16 N7 A B 19 111.794 93.079 18.894 1.00 76.86 N
ATOM 17 C5 A B 19 111.145 92.536 19.993 1.00 76.94 C
ATOM 18 C6 A B 19 111.596 92.172 21.263 1.00 77.77 C
ATOM 19 N6 A B 19 112.861 92.321 21.663 1.00 77.78 N
ATOM 20 N1 A B 19 110.694 91.650 22.125 1.00 77.88 N
ATOM 21 C2 A B 19 109.426 91.517 21.721 1.00 76.86 C
ATOM 22 N3 A B 19 108.881 91.832 20.554 1.00 76.34 N
ATOM 23 C4 A B 19 109.806 92.344 19.725 1.00 75.75 C
ATOM 24 P G B 20 104.767 94.969 16.749 1.00 65.96 P
ATOM 25 OP1 G B 20 105.368 96.048 17.577 1.00 66.12 O
ATOM 26 OP2 G B 20 103.509 94.325 17.194 1.00 66.34 O
ATOM 27 O5' G B 20 104.556 95.554 15.285 1.00 65.61 O
TER
Atoms:
C2: (110.793,87.588,6.278)
OP1: (108.994,80.421,9.645)
OP2: (108.582,82.719,10.752)
C4: (110.515,88.380,8.443)
O5': (109.365,82.576,8.379)
C3': (111.487,83.367,6.444)
C1': (110.319,85.257,5.690)
O4': (109.391,84.267,6.089)
C5': (109.344,82.055,7.061)
P: (108.565,81.840,9.544)
O2: (111.116,87.744,5.085)
C4': (110.056,82.983,6.112)
C2': (111.675,84.575,5.544)
O2': (111.832,84.190,4.197)
N1: (110.360,86.323,6.694)
N3: (110.857,88.599,7.172)
N4: (110.610,89.406,9.294)
C6: (110.001,86.108,7.993)
C5: (110.065,87.097,8.896)
O3': (112.394,82.340,6.077)
OP1: (108.994,80.421,9.645)
OP2: (108.582,82.719,10.752)
C4: (110.515,88.380,8.443)
O5': (109.365,82.576,8.379)
C3': (111.487,83.367,6.444)
C1': (110.319,85.257,5.690)
O4': (109.391,84.267,6.089)
C5': (109.344,82.055,7.061)
P: (108.565,81.840,9.544)
O2: (111.116,87.744,5.085)
C4': (110.056,82.983,6.112)
C2': (111.675,84.575,5.544)
O2': (111.832,84.190,4.197)
N1: (110.360,86.323,6.694)
N3: (110.857,88.599,7.172)
N4: (110.610,89.406,9.294)
C6: (110.001,86.108,7.993)
C5: (110.065,87.097,8.896)
O3': (112.394,82.340,6.077)
OP1: (109.850,90.165,12.111)
OP2: (108.872,92.461,11.489)
C3': (107.163,94.093,16.107)
C1': (108.344,92.896,17.744)
C5': (108.739,93.051,14.355)
O4': (108.437,92.136,16.561)
C8: (110.846,93.209,18.005)
O2': (107.521,95.077,18.354)
C6: (111.596,92.172,21.263)
C5: (111.145,92.536,19.993)
C4: (109.806,92.344,19.725)
P: (109.723,91.622,12.381)
C4': (107.762,92.838,15.482)
C2': (108.081,94.328,17.296)
C2: (109.426,91.517,21.721)
N1: (110.694,91.650,22.125)
N3: (108.881,91.832,20.554)
N6: (112.861,92.321,21.663)
N7: (111.794,93.079,18.894)
N9: (109.613,92.807,18.450)
O5': (109.210,91.793,13.880)
O3': (105.842,93.789,16.549)
OP2: (108.872,92.461,11.489)
C3': (107.163,94.093,16.107)
C1': (108.344,92.896,17.744)
C5': (108.739,93.051,14.355)
O4': (108.437,92.136,16.561)
C8: (110.846,93.209,18.005)
O2': (107.521,95.077,18.354)
C6: (111.596,92.172,21.263)
C5: (111.145,92.536,19.993)
C4: (109.806,92.344,19.725)
P: (109.723,91.622,12.381)
C4': (107.762,92.838,15.482)
C2': (108.081,94.328,17.296)
C2: (109.426,91.517,21.721)
N1: (110.694,91.650,22.125)
N3: (108.881,91.832,20.554)
N6: (112.861,92.321,21.663)
N7: (111.794,93.079,18.894)
N9: (109.613,92.807,18.450)
O5': (109.210,91.793,13.880)
O3': (105.842,93.789,16.549)
Image (generated by PyMOL):