Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2X:A28:A43
Extra
PDB:
ATOM 1 O3' G A 27 -5.701 -45.055 -1.277 1.00 32.50 O
ATOM 2 P A A 28 -5.880 -46.100 -2.493 1.00 31.12 P
ATOM 3 OP1 A A 28 -5.371 -47.431 -2.103 1.00 31.30 O
ATOM 4 OP2 A A 28 -5.299 -45.419 -3.679 1.00 31.71 O
ATOM 5 O5' A A 28 -7.459 -46.194 -2.682 1.00 28.80 O
ATOM 6 C5' A A 28 -8.222 -44.993 -2.677 1.00 29.38 C
ATOM 7 C4' A A 28 -9.705 -45.256 -2.750 1.00 29.30 C
ATOM 8 O4' A A 28 -10.136 -46.269 -1.810 1.00 29.44 O
ATOM 9 C3' A A 28 -10.404 -43.983 -2.339 1.00 29.51 C
ATOM 10 O3' A A 28 -10.607 -43.225 -3.506 1.00 30.05 O
ATOM 11 C2' A A 28 -11.628 -44.460 -1.576 1.00 29.12 C
ATOM 12 O2' A A 28 -12.688 -44.791 -2.445 1.00 29.69 O
ATOM 13 C1' A A 28 -11.087 -45.730 -0.916 1.00 28.69 C
ATOM 14 N9 A A 28 -10.386 -45.576 0.362 1.00 29.04 N
ATOM 15 C8 A A 28 -9.095 -45.998 0.583 1.00 28.91 C
ATOM 16 N7 A A 28 -8.678 -45.824 1.809 1.00 27.94 N
ATOM 17 C5 A A 28 -9.763 -45.237 2.447 1.00 28.99 C
ATOM 18 C6 A A 28 -9.961 -44.820 3.773 1.00 29.13 C
ATOM 19 N6 A A 28 -9.052 -44.967 4.738 1.00 30.43 N
ATOM 20 N1 A A 28 -11.139 -44.248 4.081 1.00 29.43 N
ATOM 21 C2 A A 28 -12.059 -44.129 3.122 1.00 29.34 C
ATOM 22 N3 A A 28 -12.006 -44.503 1.845 1.00 29.36 N
ATOM 23 C4 A A 28 -10.816 -45.056 1.563 1.00 28.90 C
ATOM 24 P G A 29 -9.673 -41.953 -3.780 1.00 29.91 P
ATOM 25 OP1 G A 29 -9.662 -41.625 -5.215 1.00 29.22 O
ATOM 26 OP2 G A 29 -8.376 -42.166 -3.075 1.00 30.38 O
ATOM 27 O5' G A 29 -10.481 -40.821 -3.012 1.00 30.86 O
TER
ATOM 1 O3' A B 42 -5.781 -48.932 9.373 1.00 21.09 O
ATOM 2 P A B 43 -6.800 -49.136 8.153 1.00 22.36 P
ATOM 3 OP1 A B 43 -6.846 -50.576 7.784 1.00 22.50 O
ATOM 4 OP2 A B 43 -6.461 -48.113 7.124 1.00 21.50 O
ATOM 5 O5' A B 43 -8.223 -48.787 8.770 1.00 21.98 O
ATOM 6 C5' A B 43 -8.523 -47.451 9.151 1.00 21.13 C
ATOM 7 C4' A B 43 -9.881 -47.054 8.650 1.00 20.63 C
ATOM 8 O4' A B 43 -10.898 -47.798 9.353 1.00 20.90 O
ATOM 9 C3' A B 43 -10.188 -45.604 8.945 1.00 21.06 C
ATOM 10 O3' A B 43 -9.710 -44.819 7.870 1.00 22.46 O
ATOM 11 C2' A B 43 -11.701 -45.584 9.056 1.00 20.29 C
ATOM 12 O2' A B 43 -12.308 -45.544 7.788 1.00 20.38 O
ATOM 13 C1' A B 43 -11.978 -46.944 9.689 1.00 20.87 C
ATOM 14 N9 A B 43 -12.100 -46.926 11.154 1.00 21.80 N
ATOM 15 C8 A B 43 -11.241 -47.519 12.050 1.00 21.82 C
ATOM 16 N7 A B 43 -11.604 -47.384 13.301 1.00 22.51 N
ATOM 17 C5 A B 43 -12.779 -46.651 13.231 1.00 22.73 C
ATOM 18 C6 A B 43 -13.660 -46.191 14.222 1.00 23.33 C
ATOM 19 N6 A B 43 -13.495 -46.435 15.528 1.00 22.14 N
ATOM 20 N1 A B 43 -14.733 -45.470 13.825 1.00 23.48 N
ATOM 21 C2 A B 43 -14.904 -45.247 12.520 1.00 22.80 C
ATOM 22 N3 A B 43 -14.153 -45.638 11.492 1.00 23.70 N
ATOM 23 C4 A B 43 -13.091 -46.346 11.919 1.00 22.32 C
ATOM 24 P C B 44 -8.695 -43.631 8.166 1.00 21.60 P
ATOM 25 OP1 C B 44 -8.534 -42.864 6.918 1.00 23.05 O
ATOM 26 OP2 C B 44 -7.500 -44.179 8.858 1.00 21.79 O
ATOM 27 O5' C B 44 -9.526 -42.743 9.176 1.00 21.97 O
TER
ATOM 2 P A A 28 -5.880 -46.100 -2.493 1.00 31.12 P
ATOM 3 OP1 A A 28 -5.371 -47.431 -2.103 1.00 31.30 O
ATOM 4 OP2 A A 28 -5.299 -45.419 -3.679 1.00 31.71 O
ATOM 5 O5' A A 28 -7.459 -46.194 -2.682 1.00 28.80 O
ATOM 6 C5' A A 28 -8.222 -44.993 -2.677 1.00 29.38 C
ATOM 7 C4' A A 28 -9.705 -45.256 -2.750 1.00 29.30 C
ATOM 8 O4' A A 28 -10.136 -46.269 -1.810 1.00 29.44 O
ATOM 9 C3' A A 28 -10.404 -43.983 -2.339 1.00 29.51 C
ATOM 10 O3' A A 28 -10.607 -43.225 -3.506 1.00 30.05 O
ATOM 11 C2' A A 28 -11.628 -44.460 -1.576 1.00 29.12 C
ATOM 12 O2' A A 28 -12.688 -44.791 -2.445 1.00 29.69 O
ATOM 13 C1' A A 28 -11.087 -45.730 -0.916 1.00 28.69 C
ATOM 14 N9 A A 28 -10.386 -45.576 0.362 1.00 29.04 N
ATOM 15 C8 A A 28 -9.095 -45.998 0.583 1.00 28.91 C
ATOM 16 N7 A A 28 -8.678 -45.824 1.809 1.00 27.94 N
ATOM 17 C5 A A 28 -9.763 -45.237 2.447 1.00 28.99 C
ATOM 18 C6 A A 28 -9.961 -44.820 3.773 1.00 29.13 C
ATOM 19 N6 A A 28 -9.052 -44.967 4.738 1.00 30.43 N
ATOM 20 N1 A A 28 -11.139 -44.248 4.081 1.00 29.43 N
ATOM 21 C2 A A 28 -12.059 -44.129 3.122 1.00 29.34 C
ATOM 22 N3 A A 28 -12.006 -44.503 1.845 1.00 29.36 N
ATOM 23 C4 A A 28 -10.816 -45.056 1.563 1.00 28.90 C
ATOM 24 P G A 29 -9.673 -41.953 -3.780 1.00 29.91 P
ATOM 25 OP1 G A 29 -9.662 -41.625 -5.215 1.00 29.22 O
ATOM 26 OP2 G A 29 -8.376 -42.166 -3.075 1.00 30.38 O
ATOM 27 O5' G A 29 -10.481 -40.821 -3.012 1.00 30.86 O
TER
ATOM 1 O3' A B 42 -5.781 -48.932 9.373 1.00 21.09 O
ATOM 2 P A B 43 -6.800 -49.136 8.153 1.00 22.36 P
ATOM 3 OP1 A B 43 -6.846 -50.576 7.784 1.00 22.50 O
ATOM 4 OP2 A B 43 -6.461 -48.113 7.124 1.00 21.50 O
ATOM 5 O5' A B 43 -8.223 -48.787 8.770 1.00 21.98 O
ATOM 6 C5' A B 43 -8.523 -47.451 9.151 1.00 21.13 C
ATOM 7 C4' A B 43 -9.881 -47.054 8.650 1.00 20.63 C
ATOM 8 O4' A B 43 -10.898 -47.798 9.353 1.00 20.90 O
ATOM 9 C3' A B 43 -10.188 -45.604 8.945 1.00 21.06 C
ATOM 10 O3' A B 43 -9.710 -44.819 7.870 1.00 22.46 O
ATOM 11 C2' A B 43 -11.701 -45.584 9.056 1.00 20.29 C
ATOM 12 O2' A B 43 -12.308 -45.544 7.788 1.00 20.38 O
ATOM 13 C1' A B 43 -11.978 -46.944 9.689 1.00 20.87 C
ATOM 14 N9 A B 43 -12.100 -46.926 11.154 1.00 21.80 N
ATOM 15 C8 A B 43 -11.241 -47.519 12.050 1.00 21.82 C
ATOM 16 N7 A B 43 -11.604 -47.384 13.301 1.00 22.51 N
ATOM 17 C5 A B 43 -12.779 -46.651 13.231 1.00 22.73 C
ATOM 18 C6 A B 43 -13.660 -46.191 14.222 1.00 23.33 C
ATOM 19 N6 A B 43 -13.495 -46.435 15.528 1.00 22.14 N
ATOM 20 N1 A B 43 -14.733 -45.470 13.825 1.00 23.48 N
ATOM 21 C2 A B 43 -14.904 -45.247 12.520 1.00 22.80 C
ATOM 22 N3 A B 43 -14.153 -45.638 11.492 1.00 23.70 N
ATOM 23 C4 A B 43 -13.091 -46.346 11.919 1.00 22.32 C
ATOM 24 P C B 44 -8.695 -43.631 8.166 1.00 21.60 P
ATOM 25 OP1 C B 44 -8.534 -42.864 6.918 1.00 23.05 O
ATOM 26 OP2 C B 44 -7.500 -44.179 8.858 1.00 21.79 O
ATOM 27 O5' C B 44 -9.526 -42.743 9.176 1.00 21.97 O
TER
Atoms:
OP1: (-5.371,-47.431,-2.103)
OP2: (-5.299,-45.419,-3.679)
C3': (-10.404,-43.983,-2.339)
C1': (-11.087,-45.730,-0.916)
C5': (-8.222,-44.993,-2.677)
O4': (-10.136,-46.269,-1.810)
C8: (-9.095,-45.998,0.583)
O2': (-12.688,-44.791,-2.445)
C6: (-9.961,-44.820,3.773)
C5: (-9.763,-45.237,2.447)
C4: (-10.816,-45.056,1.563)
P: (-5.880,-46.100,-2.493)
C4': (-9.705,-45.256,-2.750)
C2': (-11.628,-44.460,-1.576)
C2: (-12.059,-44.129,3.122)
N1: (-11.139,-44.248,4.081)
N3: (-12.006,-44.503,1.845)
N6: (-9.052,-44.967,4.738)
N7: (-8.678,-45.824,1.809)
N9: (-10.386,-45.576,0.362)
O5': (-7.459,-46.194,-2.682)
O3': (-10.607,-43.225,-3.506)
OP2: (-5.299,-45.419,-3.679)
C3': (-10.404,-43.983,-2.339)
C1': (-11.087,-45.730,-0.916)
C5': (-8.222,-44.993,-2.677)
O4': (-10.136,-46.269,-1.810)
C8: (-9.095,-45.998,0.583)
O2': (-12.688,-44.791,-2.445)
C6: (-9.961,-44.820,3.773)
C5: (-9.763,-45.237,2.447)
C4: (-10.816,-45.056,1.563)
P: (-5.880,-46.100,-2.493)
C4': (-9.705,-45.256,-2.750)
C2': (-11.628,-44.460,-1.576)
C2: (-12.059,-44.129,3.122)
N1: (-11.139,-44.248,4.081)
N3: (-12.006,-44.503,1.845)
N6: (-9.052,-44.967,4.738)
N7: (-8.678,-45.824,1.809)
N9: (-10.386,-45.576,0.362)
O5': (-7.459,-46.194,-2.682)
O3': (-10.607,-43.225,-3.506)
OP1: (-6.846,-50.576,7.784)
OP2: (-6.461,-48.113,7.124)
C3': (-10.188,-45.604,8.945)
C1': (-11.978,-46.944,9.689)
C5': (-8.523,-47.451,9.151)
O4': (-10.898,-47.798,9.353)
C8: (-11.241,-47.519,12.050)
O2': (-12.308,-45.544,7.788)
C6: (-13.660,-46.191,14.222)
C5: (-12.779,-46.651,13.231)
C4: (-13.091,-46.346,11.919)
P: (-6.800,-49.136,8.153)
C4': (-9.881,-47.054,8.650)
C2': (-11.701,-45.584,9.056)
C2: (-14.904,-45.247,12.520)
N1: (-14.733,-45.470,13.825)
N3: (-14.153,-45.638,11.492)
N6: (-13.495,-46.435,15.528)
N7: (-11.604,-47.384,13.301)
N9: (-12.100,-46.926,11.154)
O5': (-8.223,-48.787,8.770)
O3': (-9.710,-44.819,7.870)
OP2: (-6.461,-48.113,7.124)
C3': (-10.188,-45.604,8.945)
C1': (-11.978,-46.944,9.689)
C5': (-8.523,-47.451,9.151)
O4': (-10.898,-47.798,9.353)
C8: (-11.241,-47.519,12.050)
O2': (-12.308,-45.544,7.788)
C6: (-13.660,-46.191,14.222)
C5: (-12.779,-46.651,13.231)
C4: (-13.091,-46.346,11.919)
P: (-6.800,-49.136,8.153)
C4': (-9.881,-47.054,8.650)
C2': (-11.701,-45.584,9.056)
C2: (-14.904,-45.247,12.520)
N1: (-14.733,-45.470,13.825)
N3: (-14.153,-45.638,11.492)
N6: (-13.495,-46.435,15.528)
N7: (-11.604,-47.384,13.301)
N9: (-12.100,-46.926,11.154)
O5': (-8.223,-48.787,8.770)
O3': (-9.710,-44.819,7.870)
Image (generated by PyMOL):