Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12978:12979
Extra
PDB:
ATOM 1 O3' C A2977 103.520 49.034 -12.498 1.00 59.35 O
ATOM 2 P A A2978 102.409 50.113 -12.923 1.00 60.94 P
ATOM 3 OP1 A A2978 102.807 50.653 -14.246 1.00 61.77 O
ATOM 4 OP2 A A2978 102.265 51.041 -11.806 1.00 60.74 O
ATOM 5 O5' A A2978 101.106 49.224 -13.068 1.00 60.47 O
ATOM 6 C5' A A2978 101.035 48.195 -14.042 1.00 60.56 C
ATOM 7 C4' A A2978 99.814 47.332 -13.858 1.00 59.99 C
ATOM 8 O4' A A2978 99.887 46.611 -12.608 1.00 59.24 O
ATOM 9 C3' A A2978 98.476 48.047 -13.773 1.00 59.93 C
ATOM 10 O3' A A2978 97.995 48.432 -15.030 1.00 60.53 O
ATOM 11 C2' A A2978 97.617 46.999 -13.138 1.00 59.19 C
ATOM 12 O2' A A2978 97.334 45.999 -14.109 1.00 59.27 O
ATOM 13 C1' A A2978 98.589 46.424 -12.104 1.00 58.73 C
ATOM 14 N9 A A2978 98.519 47.130 -10.831 1.00 58.39 N
ATOM 15 C8 A A2978 99.354 48.108 -10.379 1.00 58.65 C
ATOM 16 N7 A A2978 99.070 48.560 -9.180 1.00 58.25 N
ATOM 17 C5 A A2978 97.964 47.821 -8.827 1.00 57.67 C
ATOM 18 C6 A A2978 97.165 47.792 -7.663 1.00 57.05 C
ATOM 19 N6 A A2978 97.356 48.569 -6.602 1.00 56.90 N
ATOM 20 N1 A A2978 96.138 46.923 -7.629 1.00 56.59 N
ATOM 21 C2 A A2978 95.946 46.160 -8.709 1.00 56.77 C
ATOM 22 N3 A A2978 96.623 46.075 -9.865 1.00 57.34 N
ATOM 23 C4 A A2978 97.631 46.939 -9.845 1.00 57.76 C
ATOM 24 P A A2979 96.991 49.649 -15.150 1.00 70.25 P
ATOM 25 OP1 A A2979 96.943 50.049 -16.576 1.00 71.02 O
ATOM 26 OP2 A A2979 97.392 50.642 -14.140 1.00 70.19 O
ATOM 27 O5' A A2979 95.645 48.971 -14.725 1.00 69.63 O
TER
ATOM 1 O3' A B2978 97.995 48.432 -15.030 1.00 60.53 O
ATOM 2 P A B2979 96.991 49.649 -15.150 1.00 70.25 P
ATOM 3 OP1 A B2979 96.943 50.049 -16.576 1.00 71.02 O
ATOM 4 OP2 A B2979 97.392 50.642 -14.140 1.00 70.19 O
ATOM 5 O5' A B2979 95.645 48.971 -14.725 1.00 69.63 O
ATOM 6 C5' A B2979 94.632 49.724 -14.132 1.00 69.44 C
ATOM 7 C4' A B2979 93.941 48.936 -13.078 1.00 68.61 C
ATOM 8 O4' A B2979 94.891 48.578 -12.060 1.00 68.21 O
ATOM 9 C3' A B2979 92.845 49.676 -12.348 1.00 68.36 C
ATOM 10 O3' A B2979 91.615 49.609 -13.032 1.00 68.46 O
ATOM 11 C2' A B2979 92.831 49.037 -10.970 1.00 67.56 C
ATOM 12 O2' A B2979 92.088 47.828 -10.977 1.00 67.08 O
ATOM 13 C1' A B2979 94.306 48.702 -10.786 1.00 67.61 C
ATOM 14 N9 A B2979 95.036 49.744 -10.059 1.00 67.75 N
ATOM 15 C8 A B2979 96.098 50.481 -10.493 1.00 68.35 C
ATOM 16 N7 A B2979 96.552 51.291 -9.584 1.00 68.31 N
ATOM 17 C5 A B2979 95.747 51.044 -8.497 1.00 67.65 C
ATOM 18 C6 A B2979 95.694 51.573 -7.211 1.00 67.30 C
ATOM 19 N6 A B2979 96.472 52.519 -6.707 1.00 67.54 N
ATOM 20 N1 A B2979 94.758 51.086 -6.411 1.00 66.66 N
ATOM 21 C2 A B2979 93.917 50.160 -6.865 1.00 66.40 C
ATOM 22 N3 A B2979 93.849 49.586 -8.045 1.00 66.68 N
ATOM 23 C4 A B2979 94.814 50.088 -8.791 1.00 67.30 C
ATOM 24 P C B2980 90.990 50.934 -13.661 1.00 77.74 P
ATOM 25 OP1 C B2980 89.897 50.514 -14.556 1.00 77.85 O
ATOM 26 OP2 C B2980 92.089 51.735 -14.213 1.00 78.41 O
ATOM 27 O5' C B2980 90.415 51.636 -12.383 1.00 77.33 O
TER
ATOM 2 P A A2978 102.409 50.113 -12.923 1.00 60.94 P
ATOM 3 OP1 A A2978 102.807 50.653 -14.246 1.00 61.77 O
ATOM 4 OP2 A A2978 102.265 51.041 -11.806 1.00 60.74 O
ATOM 5 O5' A A2978 101.106 49.224 -13.068 1.00 60.47 O
ATOM 6 C5' A A2978 101.035 48.195 -14.042 1.00 60.56 C
ATOM 7 C4' A A2978 99.814 47.332 -13.858 1.00 59.99 C
ATOM 8 O4' A A2978 99.887 46.611 -12.608 1.00 59.24 O
ATOM 9 C3' A A2978 98.476 48.047 -13.773 1.00 59.93 C
ATOM 10 O3' A A2978 97.995 48.432 -15.030 1.00 60.53 O
ATOM 11 C2' A A2978 97.617 46.999 -13.138 1.00 59.19 C
ATOM 12 O2' A A2978 97.334 45.999 -14.109 1.00 59.27 O
ATOM 13 C1' A A2978 98.589 46.424 -12.104 1.00 58.73 C
ATOM 14 N9 A A2978 98.519 47.130 -10.831 1.00 58.39 N
ATOM 15 C8 A A2978 99.354 48.108 -10.379 1.00 58.65 C
ATOM 16 N7 A A2978 99.070 48.560 -9.180 1.00 58.25 N
ATOM 17 C5 A A2978 97.964 47.821 -8.827 1.00 57.67 C
ATOM 18 C6 A A2978 97.165 47.792 -7.663 1.00 57.05 C
ATOM 19 N6 A A2978 97.356 48.569 -6.602 1.00 56.90 N
ATOM 20 N1 A A2978 96.138 46.923 -7.629 1.00 56.59 N
ATOM 21 C2 A A2978 95.946 46.160 -8.709 1.00 56.77 C
ATOM 22 N3 A A2978 96.623 46.075 -9.865 1.00 57.34 N
ATOM 23 C4 A A2978 97.631 46.939 -9.845 1.00 57.76 C
ATOM 24 P A A2979 96.991 49.649 -15.150 1.00 70.25 P
ATOM 25 OP1 A A2979 96.943 50.049 -16.576 1.00 71.02 O
ATOM 26 OP2 A A2979 97.392 50.642 -14.140 1.00 70.19 O
ATOM 27 O5' A A2979 95.645 48.971 -14.725 1.00 69.63 O
TER
ATOM 1 O3' A B2978 97.995 48.432 -15.030 1.00 60.53 O
ATOM 2 P A B2979 96.991 49.649 -15.150 1.00 70.25 P
ATOM 3 OP1 A B2979 96.943 50.049 -16.576 1.00 71.02 O
ATOM 4 OP2 A B2979 97.392 50.642 -14.140 1.00 70.19 O
ATOM 5 O5' A B2979 95.645 48.971 -14.725 1.00 69.63 O
ATOM 6 C5' A B2979 94.632 49.724 -14.132 1.00 69.44 C
ATOM 7 C4' A B2979 93.941 48.936 -13.078 1.00 68.61 C
ATOM 8 O4' A B2979 94.891 48.578 -12.060 1.00 68.21 O
ATOM 9 C3' A B2979 92.845 49.676 -12.348 1.00 68.36 C
ATOM 10 O3' A B2979 91.615 49.609 -13.032 1.00 68.46 O
ATOM 11 C2' A B2979 92.831 49.037 -10.970 1.00 67.56 C
ATOM 12 O2' A B2979 92.088 47.828 -10.977 1.00 67.08 O
ATOM 13 C1' A B2979 94.306 48.702 -10.786 1.00 67.61 C
ATOM 14 N9 A B2979 95.036 49.744 -10.059 1.00 67.75 N
ATOM 15 C8 A B2979 96.098 50.481 -10.493 1.00 68.35 C
ATOM 16 N7 A B2979 96.552 51.291 -9.584 1.00 68.31 N
ATOM 17 C5 A B2979 95.747 51.044 -8.497 1.00 67.65 C
ATOM 18 C6 A B2979 95.694 51.573 -7.211 1.00 67.30 C
ATOM 19 N6 A B2979 96.472 52.519 -6.707 1.00 67.54 N
ATOM 20 N1 A B2979 94.758 51.086 -6.411 1.00 66.66 N
ATOM 21 C2 A B2979 93.917 50.160 -6.865 1.00 66.40 C
ATOM 22 N3 A B2979 93.849 49.586 -8.045 1.00 66.68 N
ATOM 23 C4 A B2979 94.814 50.088 -8.791 1.00 67.30 C
ATOM 24 P C B2980 90.990 50.934 -13.661 1.00 77.74 P
ATOM 25 OP1 C B2980 89.897 50.514 -14.556 1.00 77.85 O
ATOM 26 OP2 C B2980 92.089 51.735 -14.213 1.00 78.41 O
ATOM 27 O5' C B2980 90.415 51.636 -12.383 1.00 77.33 O
TER
Atoms:
OP1: (102.807,50.653,-14.246)
OP2: (102.265,51.041,-11.806)
C3': (98.476,48.047,-13.773)
C1': (98.589,46.424,-12.104)
C5': (101.035,48.195,-14.042)
O4': (99.887,46.611,-12.608)
C8: (99.354,48.108,-10.379)
O2': (97.334,45.999,-14.109)
C6: (97.165,47.792,-7.663)
C5: (97.964,47.821,-8.827)
C4: (97.631,46.939,-9.845)
P: (102.409,50.113,-12.923)
C4': (99.814,47.332,-13.858)
C2': (97.617,46.999,-13.138)
C2: (95.946,46.160,-8.709)
N1: (96.138,46.923,-7.629)
N3: (96.623,46.075,-9.865)
N6: (97.356,48.569,-6.602)
N7: (99.070,48.560,-9.180)
N9: (98.519,47.130,-10.831)
O5': (101.106,49.224,-13.068)
O3': (97.995,48.432,-15.030)
OP2: (102.265,51.041,-11.806)
C3': (98.476,48.047,-13.773)
C1': (98.589,46.424,-12.104)
C5': (101.035,48.195,-14.042)
O4': (99.887,46.611,-12.608)
C8: (99.354,48.108,-10.379)
O2': (97.334,45.999,-14.109)
C6: (97.165,47.792,-7.663)
C5: (97.964,47.821,-8.827)
C4: (97.631,46.939,-9.845)
P: (102.409,50.113,-12.923)
C4': (99.814,47.332,-13.858)
C2': (97.617,46.999,-13.138)
C2: (95.946,46.160,-8.709)
N1: (96.138,46.923,-7.629)
N3: (96.623,46.075,-9.865)
N6: (97.356,48.569,-6.602)
N7: (99.070,48.560,-9.180)
N9: (98.519,47.130,-10.831)
O5': (101.106,49.224,-13.068)
O3': (97.995,48.432,-15.030)
OP1: (96.943,50.049,-16.576)
OP2: (97.392,50.642,-14.140)
C3': (92.845,49.676,-12.348)
C1': (94.306,48.702,-10.786)
C5': (94.632,49.724,-14.132)
O4': (94.891,48.578,-12.060)
C8: (96.098,50.481,-10.493)
O2': (92.088,47.828,-10.977)
C6: (95.694,51.573,-7.211)
C5: (95.747,51.044,-8.497)
C4: (94.814,50.088,-8.791)
P: (96.991,49.649,-15.150)
C4': (93.941,48.936,-13.078)
C2': (92.831,49.037,-10.970)
C2: (93.917,50.160,-6.865)
N1: (94.758,51.086,-6.411)
N3: (93.849,49.586,-8.045)
N6: (96.472,52.519,-6.707)
N7: (96.552,51.291,-9.584)
N9: (95.036,49.744,-10.059)
O5': (95.645,48.971,-14.725)
O3': (91.615,49.609,-13.032)
OP2: (97.392,50.642,-14.140)
C3': (92.845,49.676,-12.348)
C1': (94.306,48.702,-10.786)
C5': (94.632,49.724,-14.132)
O4': (94.891,48.578,-12.060)
C8: (96.098,50.481,-10.493)
O2': (92.088,47.828,-10.977)
C6: (95.694,51.573,-7.211)
C5: (95.747,51.044,-8.497)
C4: (94.814,50.088,-8.791)
P: (96.991,49.649,-15.150)
C4': (93.941,48.936,-13.078)
C2': (92.831,49.037,-10.970)
C2: (93.917,50.160,-6.865)
N1: (94.758,51.086,-6.411)
N3: (93.849,49.586,-8.045)
N6: (96.472,52.519,-6.707)
N7: (96.552,51.291,-9.584)
N9: (95.036,49.744,-10.059)
O5': (95.645,48.971,-14.725)
O3': (91.615,49.609,-13.032)
Image (generated by PyMOL):