Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3G78:A58:A59
Extra
PDB:
ATOM 1 O3' U A 57 -8.108 106.972 105.126 1.00 2.00 O
ATOM 2 P A A 58 -6.615 107.346 105.515 1.00 2.00 P
ATOM 3 OP1 A A 58 -6.072 108.214 104.458 1.00 2.00 O
ATOM 4 OP2 A A 58 -5.908 106.115 105.899 1.00 2.00 O
ATOM 5 O5' A A 58 -6.794 108.206 106.844 1.00 2.00 O
ATOM 6 C5' A A 58 -7.604 109.364 106.852 1.00 2.00 C
ATOM 7 C4' A A 58 -7.498 110.070 108.191 1.00 2.00 C
ATOM 8 O4' A A 58 -8.408 109.445 109.122 1.00 2.00 O
ATOM 9 C3' A A 58 -6.143 109.969 108.853 1.00 2.00 C
ATOM 10 O3' A A 58 -5.368 111.037 108.420 1.00 2.00 O
ATOM 11 C2' A A 58 -6.516 110.132 110.316 1.00 2.00 C
ATOM 12 O2' A A 58 -6.811 111.459 110.635 1.00 2.00 O
ATOM 13 C1' A A 58 -7.817 109.358 110.400 1.00 2.00 C
ATOM 14 N9 A A 58 -7.636 107.956 110.783 1.00 2.00 N
ATOM 15 C8 A A 58 -7.344 106.895 109.979 1.00 2.00 C
ATOM 16 N7 A A 58 -7.236 105.764 110.631 1.00 2.00 N
ATOM 17 C5 A A 58 -7.469 106.101 111.949 1.00 2.00 C
ATOM 18 C6 A A 58 -7.509 105.354 113.143 1.00 2.00 C
ATOM 19 N6 A A 58 -7.299 104.035 113.214 1.00 2.00 N
ATOM 20 N1 A A 58 -7.777 106.016 114.284 1.00 2.00 N
ATOM 21 C2 A A 58 -7.994 107.331 114.237 1.00 2.00 C
ATOM 22 N3 A A 58 -7.980 108.128 113.183 1.00 2.00 N
ATOM 23 C4 A A 58 -7.714 107.447 112.061 1.00 2.00 C
ATOM 24 P A A 59 -3.772 110.997 108.424 1.00 2.00 P
ATOM 25 OP1 A A 59 -3.267 112.381 108.309 1.00 2.00 O
ATOM 26 OP2 A A 59 -3.351 110.005 107.419 1.00 2.00 O
ATOM 27 O5' A A 59 -3.382 110.523 109.896 1.00 2.00 O
TER
ATOM 1 O3' A B 58 -5.368 111.037 108.420 1.00 2.00 O
ATOM 2 P A B 59 -3.772 110.997 108.424 1.00 2.00 P
ATOM 3 OP1 A B 59 -3.267 112.381 108.309 1.00 2.00 O
ATOM 4 OP2 A B 59 -3.351 110.005 107.419 1.00 2.00 O
ATOM 5 O5' A B 59 -3.382 110.523 109.896 1.00 2.00 O
ATOM 6 C5' A B 59 -3.652 111.349 111.013 1.00 2.00 C
ATOM 7 C4' A B 59 -3.295 110.632 112.301 1.00 2.00 C
ATOM 8 O4' A B 59 -4.315 109.639 112.614 1.00 2.00 O
ATOM 9 C3' A B 59 -2.001 109.838 112.260 1.00 2.00 C
ATOM 10 O3' A B 59 -0.893 110.665 112.559 1.00 2.00 O
ATOM 11 C2' A B 59 -2.258 108.810 113.361 1.00 2.00 C
ATOM 12 O2' A B 59 -2.139 109.340 114.659 1.00 2.00 O
ATOM 13 C1' A B 59 -3.712 108.459 113.099 1.00 2.00 C
ATOM 14 N9 A B 59 -3.801 107.431 112.081 1.00 2.00 N
ATOM 15 C8 A B 59 -3.910 107.609 110.737 1.00 2.00 C
ATOM 16 N7 A B 59 -3.953 106.495 110.058 1.00 2.00 N
ATOM 17 C5 A B 59 -3.855 105.509 111.030 1.00 2.00 C
ATOM 18 C6 A B 59 -3.843 104.102 110.975 1.00 2.00 C
ATOM 19 N6 A B 59 -3.934 103.400 109.845 1.00 2.00 N
ATOM 20 N1 A B 59 -3.734 103.432 112.131 1.00 2.00 N
ATOM 21 C2 A B 59 -3.644 104.111 113.270 1.00 2.00 C
ATOM 22 N3 A B 59 -3.646 105.421 113.457 1.00 2.00 N
ATOM 23 C4 A B 59 -3.755 106.071 112.284 1.00 2.00 C
ATOM 24 P C B 60 0.607 110.172 112.280 1.00 2.00 P
ATOM 25 OP1 C B 60 1.534 111.219 112.758 1.00 2.00 O
ATOM 26 OP2 C B 60 0.667 109.700 110.880 1.00 2.00 O
ATOM 27 O5' C B 60 0.817 108.909 113.224 1.00 2.00 O
TER
ATOM 2 P A A 58 -6.615 107.346 105.515 1.00 2.00 P
ATOM 3 OP1 A A 58 -6.072 108.214 104.458 1.00 2.00 O
ATOM 4 OP2 A A 58 -5.908 106.115 105.899 1.00 2.00 O
ATOM 5 O5' A A 58 -6.794 108.206 106.844 1.00 2.00 O
ATOM 6 C5' A A 58 -7.604 109.364 106.852 1.00 2.00 C
ATOM 7 C4' A A 58 -7.498 110.070 108.191 1.00 2.00 C
ATOM 8 O4' A A 58 -8.408 109.445 109.122 1.00 2.00 O
ATOM 9 C3' A A 58 -6.143 109.969 108.853 1.00 2.00 C
ATOM 10 O3' A A 58 -5.368 111.037 108.420 1.00 2.00 O
ATOM 11 C2' A A 58 -6.516 110.132 110.316 1.00 2.00 C
ATOM 12 O2' A A 58 -6.811 111.459 110.635 1.00 2.00 O
ATOM 13 C1' A A 58 -7.817 109.358 110.400 1.00 2.00 C
ATOM 14 N9 A A 58 -7.636 107.956 110.783 1.00 2.00 N
ATOM 15 C8 A A 58 -7.344 106.895 109.979 1.00 2.00 C
ATOM 16 N7 A A 58 -7.236 105.764 110.631 1.00 2.00 N
ATOM 17 C5 A A 58 -7.469 106.101 111.949 1.00 2.00 C
ATOM 18 C6 A A 58 -7.509 105.354 113.143 1.00 2.00 C
ATOM 19 N6 A A 58 -7.299 104.035 113.214 1.00 2.00 N
ATOM 20 N1 A A 58 -7.777 106.016 114.284 1.00 2.00 N
ATOM 21 C2 A A 58 -7.994 107.331 114.237 1.00 2.00 C
ATOM 22 N3 A A 58 -7.980 108.128 113.183 1.00 2.00 N
ATOM 23 C4 A A 58 -7.714 107.447 112.061 1.00 2.00 C
ATOM 24 P A A 59 -3.772 110.997 108.424 1.00 2.00 P
ATOM 25 OP1 A A 59 -3.267 112.381 108.309 1.00 2.00 O
ATOM 26 OP2 A A 59 -3.351 110.005 107.419 1.00 2.00 O
ATOM 27 O5' A A 59 -3.382 110.523 109.896 1.00 2.00 O
TER
ATOM 1 O3' A B 58 -5.368 111.037 108.420 1.00 2.00 O
ATOM 2 P A B 59 -3.772 110.997 108.424 1.00 2.00 P
ATOM 3 OP1 A B 59 -3.267 112.381 108.309 1.00 2.00 O
ATOM 4 OP2 A B 59 -3.351 110.005 107.419 1.00 2.00 O
ATOM 5 O5' A B 59 -3.382 110.523 109.896 1.00 2.00 O
ATOM 6 C5' A B 59 -3.652 111.349 111.013 1.00 2.00 C
ATOM 7 C4' A B 59 -3.295 110.632 112.301 1.00 2.00 C
ATOM 8 O4' A B 59 -4.315 109.639 112.614 1.00 2.00 O
ATOM 9 C3' A B 59 -2.001 109.838 112.260 1.00 2.00 C
ATOM 10 O3' A B 59 -0.893 110.665 112.559 1.00 2.00 O
ATOM 11 C2' A B 59 -2.258 108.810 113.361 1.00 2.00 C
ATOM 12 O2' A B 59 -2.139 109.340 114.659 1.00 2.00 O
ATOM 13 C1' A B 59 -3.712 108.459 113.099 1.00 2.00 C
ATOM 14 N9 A B 59 -3.801 107.431 112.081 1.00 2.00 N
ATOM 15 C8 A B 59 -3.910 107.609 110.737 1.00 2.00 C
ATOM 16 N7 A B 59 -3.953 106.495 110.058 1.00 2.00 N
ATOM 17 C5 A B 59 -3.855 105.509 111.030 1.00 2.00 C
ATOM 18 C6 A B 59 -3.843 104.102 110.975 1.00 2.00 C
ATOM 19 N6 A B 59 -3.934 103.400 109.845 1.00 2.00 N
ATOM 20 N1 A B 59 -3.734 103.432 112.131 1.00 2.00 N
ATOM 21 C2 A B 59 -3.644 104.111 113.270 1.00 2.00 C
ATOM 22 N3 A B 59 -3.646 105.421 113.457 1.00 2.00 N
ATOM 23 C4 A B 59 -3.755 106.071 112.284 1.00 2.00 C
ATOM 24 P C B 60 0.607 110.172 112.280 1.00 2.00 P
ATOM 25 OP1 C B 60 1.534 111.219 112.758 1.00 2.00 O
ATOM 26 OP2 C B 60 0.667 109.700 110.880 1.00 2.00 O
ATOM 27 O5' C B 60 0.817 108.909 113.224 1.00 2.00 O
TER
Atoms:
OP1: (-6.072,108.214,104.458)
OP2: (-5.908,106.115,105.899)
C3': (-6.143,109.969,108.853)
C1': (-7.817,109.358,110.400)
C5': (-7.604,109.364,106.852)
O4': (-8.408,109.445,109.122)
C8: (-7.344,106.895,109.979)
O2': (-6.811,111.459,110.635)
C6: (-7.509,105.354,113.143)
C5: (-7.469,106.101,111.949)
C4: (-7.714,107.447,112.061)
P: (-6.615,107.346,105.515)
C4': (-7.498,110.070,108.191)
C2': (-6.516,110.132,110.316)
C2: (-7.994,107.331,114.237)
N1: (-7.777,106.016,114.284)
N3: (-7.980,108.128,113.183)
N6: (-7.299,104.035,113.214)
N7: (-7.236,105.764,110.631)
N9: (-7.636,107.956,110.783)
O5': (-6.794,108.206,106.844)
O3': (-5.368,111.037,108.420)
OP2: (-5.908,106.115,105.899)
C3': (-6.143,109.969,108.853)
C1': (-7.817,109.358,110.400)
C5': (-7.604,109.364,106.852)
O4': (-8.408,109.445,109.122)
C8: (-7.344,106.895,109.979)
O2': (-6.811,111.459,110.635)
C6: (-7.509,105.354,113.143)
C5: (-7.469,106.101,111.949)
C4: (-7.714,107.447,112.061)
P: (-6.615,107.346,105.515)
C4': (-7.498,110.070,108.191)
C2': (-6.516,110.132,110.316)
C2: (-7.994,107.331,114.237)
N1: (-7.777,106.016,114.284)
N3: (-7.980,108.128,113.183)
N6: (-7.299,104.035,113.214)
N7: (-7.236,105.764,110.631)
N9: (-7.636,107.956,110.783)
O5': (-6.794,108.206,106.844)
O3': (-5.368,111.037,108.420)
OP1: (-3.267,112.381,108.309)
OP2: (-3.351,110.005,107.419)
C3': (-2.001,109.838,112.260)
C1': (-3.712,108.459,113.099)
C5': (-3.652,111.349,111.013)
O4': (-4.315,109.639,112.614)
C8: (-3.910,107.609,110.737)
O2': (-2.139,109.340,114.659)
C6: (-3.843,104.102,110.975)
C5: (-3.855,105.509,111.030)
C4: (-3.755,106.071,112.284)
P: (-3.772,110.997,108.424)
C4': (-3.295,110.632,112.301)
C2': (-2.258,108.810,113.361)
C2: (-3.644,104.111,113.270)
N1: (-3.734,103.432,112.131)
N3: (-3.646,105.421,113.457)
N6: (-3.934,103.400,109.845)
N7: (-3.953,106.495,110.058)
N9: (-3.801,107.431,112.081)
O5': (-3.382,110.523,109.896)
O3': (-0.893,110.665,112.559)
OP2: (-3.351,110.005,107.419)
C3': (-2.001,109.838,112.260)
C1': (-3.712,108.459,113.099)
C5': (-3.652,111.349,111.013)
O4': (-4.315,109.639,112.614)
C8: (-3.910,107.609,110.737)
O2': (-2.139,109.340,114.659)
C6: (-3.843,104.102,110.975)
C5: (-3.855,105.509,111.030)
C4: (-3.755,106.071,112.284)
P: (-3.772,110.997,108.424)
C4': (-3.295,110.632,112.301)
C2': (-2.258,108.810,113.361)
C2: (-3.644,104.111,113.270)
N1: (-3.734,103.432,112.131)
N3: (-3.646,105.421,113.457)
N6: (-3.934,103.400,109.845)
N7: (-3.953,106.495,110.058)
N9: (-3.801,107.431,112.081)
O5': (-3.382,110.523,109.896)
O3': (-0.893,110.665,112.559)
Image (generated by PyMOL):