Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B65:B66
Extra
PDB:
ATOM 1 O3' G A 64 -24.597 49.895 4.513 1.00 84.23 O
ATOM 2 P A A 65 -24.940 51.475 4.437 1.00 83.65 P
ATOM 3 OP1 A A 65 -25.803 51.706 3.253 1.00 82.96 O
ATOM 4 OP2 A A 65 -23.718 52.308 4.618 1.00 83.51 O
ATOM 5 O5' A A 65 -25.849 51.655 5.733 1.00 84.25 O
ATOM 6 C5' A A 65 -26.634 50.556 6.208 1.00 83.96 C
ATOM 7 C4' A A 65 -26.532 50.416 7.710 1.00 83.54 C
ATOM 8 O4' A A 65 -25.145 50.363 8.110 1.00 82.56 O
ATOM 9 C3' A A 65 -27.115 51.545 8.533 1.00 83.94 C
ATOM 10 O3' A A 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 11 C2' A A 65 -26.381 51.417 9.856 1.00 82.53 C
ATOM 12 O2' A A 65 -26.947 50.439 10.705 1.00 80.45 O
ATOM 13 C1' A A 65 -25.006 50.942 9.394 1.00 82.49 C
ATOM 14 N9 A A 65 -24.009 52.001 9.305 1.00 82.29 N
ATOM 15 C8 A A 65 -23.494 52.561 8.162 1.00 82.54 C
ATOM 16 N7 A A 65 -22.562 53.456 8.385 1.00 82.23 N
ATOM 17 C5 A A 65 -22.468 53.500 9.768 1.00 81.54 C
ATOM 18 C6 A A 65 -21.656 54.246 10.624 1.00 80.89 C
ATOM 19 N6 A A 65 -20.747 55.121 10.192 1.00 80.24 N
ATOM 20 N1 A A 65 -21.808 54.060 11.955 1.00 80.02 N
ATOM 21 C2 A A 65 -22.721 53.177 12.378 1.00 79.06 C
ATOM 22 N3 A A 65 -23.544 52.411 11.666 1.00 79.40 N
ATOM 23 C4 A A 65 -23.364 52.621 10.350 1.00 81.45 C
ATOM 24 P A A 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 25 OP1 A A 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 26 OP2 A A 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 27 O5' A A 66 -30.072 53.218 9.388 1.00 90.52 O
TER
ATOM 1 O3' A B 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 2 P A B 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 3 OP1 A B 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 4 OP2 A B 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 5 O5' A B 66 -30.072 53.218 9.388 1.00 90.52 O
ATOM 6 C5' A B 66 -30.733 52.458 10.402 1.00 91.07 C
ATOM 7 C4' A B 66 -30.498 53.100 11.745 1.00 91.39 C
ATOM 8 O4' A B 66 -29.083 53.029 12.046 1.00 90.81 O
ATOM 9 C3' A B 66 -30.827 54.584 11.784 1.00 92.27 C
ATOM 10 O3' A B 66 -32.201 54.798 12.062 1.00 95.16 O
ATOM 11 C2' A B 66 -29.896 55.107 12.868 1.00 90.90 C
ATOM 12 O2' A B 66 -30.404 54.883 14.166 1.00 90.97 O
ATOM 13 C1' A B 66 -28.659 54.234 12.652 1.00 88.58 C
ATOM 14 N9 A B 66 -27.696 54.845 11.743 1.00 84.83 N
ATOM 15 C8 A B 66 -27.863 55.080 10.402 1.00 83.65 C
ATOM 16 N7 A B 66 -26.819 55.618 9.828 1.00 82.87 N
ATOM 17 C5 A B 66 -25.905 55.750 10.860 1.00 82.02 C
ATOM 18 C6 A B 66 -24.602 56.247 10.898 1.00 81.31 C
ATOM 19 N6 A B 66 -23.964 56.721 9.830 1.00 80.92 N
ATOM 20 N1 A B 66 -23.964 56.239 12.087 1.00 81.37 N
ATOM 21 C2 A B 66 -24.607 55.761 13.156 1.00 81.49 C
ATOM 22 N3 A B 66 -25.834 55.262 13.243 1.00 81.58 N
ATOM 23 C4 A B 66 -26.435 55.284 12.046 1.00 82.64 C
ATOM 24 P U B 67 -33.103 55.622 11.016 1.00 98.01 P
ATOM 25 OP1 U B 67 -34.477 55.693 11.581 1.00 98.19 O
ATOM 26 OP2 U B 67 -32.897 55.047 9.654 1.00 97.19 O
ATOM 27 O5' U B 67 -32.465 57.082 11.042 1.00 97.84 O
TER
ATOM 2 P A A 65 -24.940 51.475 4.437 1.00 83.65 P
ATOM 3 OP1 A A 65 -25.803 51.706 3.253 1.00 82.96 O
ATOM 4 OP2 A A 65 -23.718 52.308 4.618 1.00 83.51 O
ATOM 5 O5' A A 65 -25.849 51.655 5.733 1.00 84.25 O
ATOM 6 C5' A A 65 -26.634 50.556 6.208 1.00 83.96 C
ATOM 7 C4' A A 65 -26.532 50.416 7.710 1.00 83.54 C
ATOM 8 O4' A A 65 -25.145 50.363 8.110 1.00 82.56 O
ATOM 9 C3' A A 65 -27.115 51.545 8.533 1.00 83.94 C
ATOM 10 O3' A A 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 11 C2' A A 65 -26.381 51.417 9.856 1.00 82.53 C
ATOM 12 O2' A A 65 -26.947 50.439 10.705 1.00 80.45 O
ATOM 13 C1' A A 65 -25.006 50.942 9.394 1.00 82.49 C
ATOM 14 N9 A A 65 -24.009 52.001 9.305 1.00 82.29 N
ATOM 15 C8 A A 65 -23.494 52.561 8.162 1.00 82.54 C
ATOM 16 N7 A A 65 -22.562 53.456 8.385 1.00 82.23 N
ATOM 17 C5 A A 65 -22.468 53.500 9.768 1.00 81.54 C
ATOM 18 C6 A A 65 -21.656 54.246 10.624 1.00 80.89 C
ATOM 19 N6 A A 65 -20.747 55.121 10.192 1.00 80.24 N
ATOM 20 N1 A A 65 -21.808 54.060 11.955 1.00 80.02 N
ATOM 21 C2 A A 65 -22.721 53.177 12.378 1.00 79.06 C
ATOM 22 N3 A A 65 -23.544 52.411 11.666 1.00 79.40 N
ATOM 23 C4 A A 65 -23.364 52.621 10.350 1.00 81.45 C
ATOM 24 P A A 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 25 OP1 A A 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 26 OP2 A A 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 27 O5' A A 66 -30.072 53.218 9.388 1.00 90.52 O
TER
ATOM 1 O3' A B 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 2 P A B 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 3 OP1 A B 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 4 OP2 A B 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 5 O5' A B 66 -30.072 53.218 9.388 1.00 90.52 O
ATOM 6 C5' A B 66 -30.733 52.458 10.402 1.00 91.07 C
ATOM 7 C4' A B 66 -30.498 53.100 11.745 1.00 91.39 C
ATOM 8 O4' A B 66 -29.083 53.029 12.046 1.00 90.81 O
ATOM 9 C3' A B 66 -30.827 54.584 11.784 1.00 92.27 C
ATOM 10 O3' A B 66 -32.201 54.798 12.062 1.00 95.16 O
ATOM 11 C2' A B 66 -29.896 55.107 12.868 1.00 90.90 C
ATOM 12 O2' A B 66 -30.404 54.883 14.166 1.00 90.97 O
ATOM 13 C1' A B 66 -28.659 54.234 12.652 1.00 88.58 C
ATOM 14 N9 A B 66 -27.696 54.845 11.743 1.00 84.83 N
ATOM 15 C8 A B 66 -27.863 55.080 10.402 1.00 83.65 C
ATOM 16 N7 A B 66 -26.819 55.618 9.828 1.00 82.87 N
ATOM 17 C5 A B 66 -25.905 55.750 10.860 1.00 82.02 C
ATOM 18 C6 A B 66 -24.602 56.247 10.898 1.00 81.31 C
ATOM 19 N6 A B 66 -23.964 56.721 9.830 1.00 80.92 N
ATOM 20 N1 A B 66 -23.964 56.239 12.087 1.00 81.37 N
ATOM 21 C2 A B 66 -24.607 55.761 13.156 1.00 81.49 C
ATOM 22 N3 A B 66 -25.834 55.262 13.243 1.00 81.58 N
ATOM 23 C4 A B 66 -26.435 55.284 12.046 1.00 82.64 C
ATOM 24 P U B 67 -33.103 55.622 11.016 1.00 98.01 P
ATOM 25 OP1 U B 67 -34.477 55.693 11.581 1.00 98.19 O
ATOM 26 OP2 U B 67 -32.897 55.047 9.654 1.00 97.19 O
ATOM 27 O5' U B 67 -32.465 57.082 11.042 1.00 97.84 O
TER
Atoms:
OP1: (-25.803,51.706,3.253)
OP2: (-23.718,52.308,4.618)
C3': (-27.115,51.545,8.533)
C1': (-25.006,50.942,9.394)
C5': (-26.634,50.556,6.208)
O4': (-25.145,50.363,8.110)
C8: (-23.494,52.561,8.162)
O2': (-26.947,50.439,10.705)
C6: (-21.656,54.246,10.624)
C5: (-22.468,53.500,9.768)
C4: (-23.364,52.621,10.350)
P: (-24.940,51.475,4.437)
C4': (-26.532,50.416,7.710)
C2': (-26.381,51.417,9.856)
C2: (-22.721,53.177,12.378)
N1: (-21.808,54.060,11.955)
N3: (-23.544,52.411,11.666)
N6: (-20.747,55.121,10.192)
N7: (-22.562,53.456,8.385)
N9: (-24.009,52.001,9.305)
O5': (-25.849,51.655,5.733)
O3': (-28.509,51.393,8.682)
OP2: (-23.718,52.308,4.618)
C3': (-27.115,51.545,8.533)
C1': (-25.006,50.942,9.394)
C5': (-26.634,50.556,6.208)
O4': (-25.145,50.363,8.110)
C8: (-23.494,52.561,8.162)
O2': (-26.947,50.439,10.705)
C6: (-21.656,54.246,10.624)
C5: (-22.468,53.500,9.768)
C4: (-23.364,52.621,10.350)
P: (-24.940,51.475,4.437)
C4': (-26.532,50.416,7.710)
C2': (-26.381,51.417,9.856)
C2: (-22.721,53.177,12.378)
N1: (-21.808,54.060,11.955)
N3: (-23.544,52.411,11.666)
N6: (-20.747,55.121,10.192)
N7: (-22.562,53.456,8.385)
N9: (-24.009,52.001,9.305)
O5': (-25.849,51.655,5.733)
O3': (-28.509,51.393,8.682)
OP1: (-30.578,51.857,7.355)
OP2: (-28.589,53.485,7.384)
C3': (-30.827,54.584,11.784)
C1': (-28.659,54.234,12.652)
C5': (-30.733,52.458,10.402)
O4': (-29.083,53.029,12.046)
C8: (-27.863,55.080,10.402)
O2': (-30.404,54.883,14.166)
C6: (-24.602,56.247,10.898)
C5: (-25.905,55.750,10.860)
C4: (-26.435,55.284,12.046)
P: (-29.474,52.517,8.090)
C4': (-30.498,53.100,11.745)
C2': (-29.896,55.107,12.868)
C2: (-24.607,55.761,13.156)
N1: (-23.964,56.239,12.087)
N3: (-25.834,55.262,13.243)
N6: (-23.964,56.721,9.830)
N7: (-26.819,55.618,9.828)
N9: (-27.696,54.845,11.743)
O5': (-30.072,53.218,9.388)
O3': (-32.201,54.798,12.062)
OP2: (-28.589,53.485,7.384)
C3': (-30.827,54.584,11.784)
C1': (-28.659,54.234,12.652)
C5': (-30.733,52.458,10.402)
O4': (-29.083,53.029,12.046)
C8: (-27.863,55.080,10.402)
O2': (-30.404,54.883,14.166)
C6: (-24.602,56.247,10.898)
C5: (-25.905,55.750,10.860)
C4: (-26.435,55.284,12.046)
P: (-29.474,52.517,8.090)
C4': (-30.498,53.100,11.745)
C2': (-29.896,55.107,12.868)
C2: (-24.607,55.761,13.156)
N1: (-23.964,56.239,12.087)
N3: (-25.834,55.262,13.243)
N6: (-23.964,56.721,9.830)
N7: (-26.819,55.618,9.828)
N9: (-27.696,54.845,11.743)
O5': (-30.072,53.218,9.388)
O3': (-32.201,54.798,12.062)
Image (generated by PyMOL):