Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01888:01889
Extra
PDB:
ATOM 1 O3' G A1887 116.915 94.246 54.033 1.00 75.96 O
ATOM 2 P A A1888 116.679 95.135 55.360 1.00 73.12 P
ATOM 3 OP1 A A1888 117.965 95.809 55.679 1.00 72.49 O
ATOM 4 OP2 A A1888 116.018 94.308 56.396 1.00 72.70 O
ATOM 5 O5' A A1888 115.659 96.261 54.879 1.00 69.42 O
ATOM 6 C5' A A1888 116.083 97.280 53.951 1.00 64.33 C
ATOM 7 C4' A A1888 115.173 98.486 54.023 1.00 60.58 C
ATOM 8 O4' A A1888 113.916 98.220 53.354 1.00 60.58 O
ATOM 9 C3' A A1888 114.762 98.950 55.406 1.00 59.38 C
ATOM 10 O3' A A1888 115.797 99.704 56.018 1.00 57.86 O
ATOM 11 C2' A A1888 113.526 99.786 55.098 1.00 59.09 C
ATOM 12 O2' A A1888 113.846 101.061 54.582 1.00 60.75 O
ATOM 13 C1' A A1888 112.885 98.969 53.975 1.00 59.78 C
ATOM 14 N9 A A1888 111.854 98.044 54.441 1.00 60.21 N
ATOM 15 C8 A A1888 111.984 96.716 54.770 1.00 60.93 C
ATOM 16 N7 A A1888 110.862 96.153 55.153 1.00 61.34 N
ATOM 17 C5 A A1888 109.932 97.179 55.074 1.00 60.52 C
ATOM 18 C6 A A1888 108.558 97.231 55.348 1.00 60.15 C
ATOM 19 N6 A A1888 107.849 96.188 55.789 1.00 59.20 N
ATOM 20 N1 A A1888 107.927 98.408 55.158 1.00 60.63 N
ATOM 21 C2 A A1888 108.638 99.457 54.728 1.00 59.81 C
ATOM 22 N3 A A1888 109.929 99.536 54.442 1.00 60.02 N
ATOM 23 C4 A A1888 110.529 98.349 54.637 1.00 60.55 C
ATOM 24 P A A1889 115.997 99.639 57.611 1.00 58.34 P
ATOM 25 OP1 A A1889 117.313 100.266 57.914 1.00 57.51 O
ATOM 26 OP2 A A1889 115.720 98.257 58.079 1.00 57.38 O
ATOM 27 O5' A A1889 114.838 100.576 58.175 1.00 57.04 O
TER
ATOM 1 O3' A B1888 115.797 99.704 56.018 1.00 57.86 O
ATOM 2 P A B1889 115.997 99.639 57.611 1.00 58.34 P
ATOM 3 OP1 A B1889 117.313 100.266 57.914 1.00 57.51 O
ATOM 4 OP2 A B1889 115.720 98.257 58.079 1.00 57.38 O
ATOM 5 O5' A B1889 114.838 100.576 58.175 1.00 57.04 O
ATOM 6 C5' A B1889 114.814 101.989 57.891 1.00 54.71 C
ATOM 7 C4' A B1889 113.436 102.546 58.151 1.00 52.91 C
ATOM 8 O4' A B1889 112.493 101.871 57.279 1.00 53.55 O
ATOM 9 C3' A B1889 112.885 102.288 59.543 1.00 52.71 C
ATOM 10 O3' A B1889 113.342 103.218 60.509 1.00 51.94 O
ATOM 11 C2' A B1889 111.385 102.365 59.317 1.00 52.55 C
ATOM 12 O2' A B1889 110.906 103.690 59.210 1.00 52.20 O
ATOM 13 C1' A B1889 111.266 101.664 57.965 1.00 53.04 C
ATOM 14 N9 A B1889 111.060 100.223 58.112 1.00 52.76 N
ATOM 15 C8 A B1889 112.005 99.227 58.172 1.00 51.91 C
ATOM 16 N7 A B1889 111.501 98.027 58.314 1.00 50.01 N
ATOM 17 C5 A B1889 110.133 98.243 58.349 1.00 51.91 C
ATOM 18 C6 A B1889 109.045 97.371 58.474 1.00 51.52 C
ATOM 19 N6 A B1889 109.163 96.050 58.597 1.00 52.59 N
ATOM 20 N1 A B1889 107.808 97.909 58.465 1.00 51.63 N
ATOM 21 C2 A B1889 107.685 99.236 58.339 1.00 51.08 C
ATOM 22 N3 A B1889 108.629 100.159 58.215 1.00 51.73 N
ATOM 23 C4 A B1889 109.847 99.591 58.226 1.00 52.99 C
ATOM 24 P G B1890 113.697 102.703 61.989 1.00 53.90 P
ATOM 25 OP1 G B1890 113.890 103.901 62.849 1.00 52.51 O
ATOM 26 OP2 G B1890 114.778 101.692 61.888 1.00 54.05 O
ATOM 27 O5' G B1890 112.377 101.947 62.457 1.00 52.86 O
TER
ATOM 2 P A A1888 116.679 95.135 55.360 1.00 73.12 P
ATOM 3 OP1 A A1888 117.965 95.809 55.679 1.00 72.49 O
ATOM 4 OP2 A A1888 116.018 94.308 56.396 1.00 72.70 O
ATOM 5 O5' A A1888 115.659 96.261 54.879 1.00 69.42 O
ATOM 6 C5' A A1888 116.083 97.280 53.951 1.00 64.33 C
ATOM 7 C4' A A1888 115.173 98.486 54.023 1.00 60.58 C
ATOM 8 O4' A A1888 113.916 98.220 53.354 1.00 60.58 O
ATOM 9 C3' A A1888 114.762 98.950 55.406 1.00 59.38 C
ATOM 10 O3' A A1888 115.797 99.704 56.018 1.00 57.86 O
ATOM 11 C2' A A1888 113.526 99.786 55.098 1.00 59.09 C
ATOM 12 O2' A A1888 113.846 101.061 54.582 1.00 60.75 O
ATOM 13 C1' A A1888 112.885 98.969 53.975 1.00 59.78 C
ATOM 14 N9 A A1888 111.854 98.044 54.441 1.00 60.21 N
ATOM 15 C8 A A1888 111.984 96.716 54.770 1.00 60.93 C
ATOM 16 N7 A A1888 110.862 96.153 55.153 1.00 61.34 N
ATOM 17 C5 A A1888 109.932 97.179 55.074 1.00 60.52 C
ATOM 18 C6 A A1888 108.558 97.231 55.348 1.00 60.15 C
ATOM 19 N6 A A1888 107.849 96.188 55.789 1.00 59.20 N
ATOM 20 N1 A A1888 107.927 98.408 55.158 1.00 60.63 N
ATOM 21 C2 A A1888 108.638 99.457 54.728 1.00 59.81 C
ATOM 22 N3 A A1888 109.929 99.536 54.442 1.00 60.02 N
ATOM 23 C4 A A1888 110.529 98.349 54.637 1.00 60.55 C
ATOM 24 P A A1889 115.997 99.639 57.611 1.00 58.34 P
ATOM 25 OP1 A A1889 117.313 100.266 57.914 1.00 57.51 O
ATOM 26 OP2 A A1889 115.720 98.257 58.079 1.00 57.38 O
ATOM 27 O5' A A1889 114.838 100.576 58.175 1.00 57.04 O
TER
ATOM 1 O3' A B1888 115.797 99.704 56.018 1.00 57.86 O
ATOM 2 P A B1889 115.997 99.639 57.611 1.00 58.34 P
ATOM 3 OP1 A B1889 117.313 100.266 57.914 1.00 57.51 O
ATOM 4 OP2 A B1889 115.720 98.257 58.079 1.00 57.38 O
ATOM 5 O5' A B1889 114.838 100.576 58.175 1.00 57.04 O
ATOM 6 C5' A B1889 114.814 101.989 57.891 1.00 54.71 C
ATOM 7 C4' A B1889 113.436 102.546 58.151 1.00 52.91 C
ATOM 8 O4' A B1889 112.493 101.871 57.279 1.00 53.55 O
ATOM 9 C3' A B1889 112.885 102.288 59.543 1.00 52.71 C
ATOM 10 O3' A B1889 113.342 103.218 60.509 1.00 51.94 O
ATOM 11 C2' A B1889 111.385 102.365 59.317 1.00 52.55 C
ATOM 12 O2' A B1889 110.906 103.690 59.210 1.00 52.20 O
ATOM 13 C1' A B1889 111.266 101.664 57.965 1.00 53.04 C
ATOM 14 N9 A B1889 111.060 100.223 58.112 1.00 52.76 N
ATOM 15 C8 A B1889 112.005 99.227 58.172 1.00 51.91 C
ATOM 16 N7 A B1889 111.501 98.027 58.314 1.00 50.01 N
ATOM 17 C5 A B1889 110.133 98.243 58.349 1.00 51.91 C
ATOM 18 C6 A B1889 109.045 97.371 58.474 1.00 51.52 C
ATOM 19 N6 A B1889 109.163 96.050 58.597 1.00 52.59 N
ATOM 20 N1 A B1889 107.808 97.909 58.465 1.00 51.63 N
ATOM 21 C2 A B1889 107.685 99.236 58.339 1.00 51.08 C
ATOM 22 N3 A B1889 108.629 100.159 58.215 1.00 51.73 N
ATOM 23 C4 A B1889 109.847 99.591 58.226 1.00 52.99 C
ATOM 24 P G B1890 113.697 102.703 61.989 1.00 53.90 P
ATOM 25 OP1 G B1890 113.890 103.901 62.849 1.00 52.51 O
ATOM 26 OP2 G B1890 114.778 101.692 61.888 1.00 54.05 O
ATOM 27 O5' G B1890 112.377 101.947 62.457 1.00 52.86 O
TER
Atoms:
OP1: (117.965,95.809,55.679)
OP2: (116.018,94.308,56.396)
C3': (114.762,98.950,55.406)
C1': (112.885,98.969,53.975)
C5': (116.083,97.280,53.951)
O4': (113.916,98.220,53.354)
C8: (111.984,96.716,54.770)
O2': (113.846,101.061,54.582)
C6: (108.558,97.231,55.348)
C5: (109.932,97.179,55.074)
C4: (110.529,98.349,54.637)
P: (116.679,95.135,55.360)
C4': (115.173,98.486,54.023)
C2': (113.526,99.786,55.098)
C2: (108.638,99.457,54.728)
N1: (107.927,98.408,55.158)
N3: (109.929,99.536,54.442)
N6: (107.849,96.188,55.789)
N7: (110.862,96.153,55.153)
N9: (111.854,98.044,54.441)
O5': (115.659,96.261,54.879)
O3': (115.797,99.704,56.018)
OP2: (116.018,94.308,56.396)
C3': (114.762,98.950,55.406)
C1': (112.885,98.969,53.975)
C5': (116.083,97.280,53.951)
O4': (113.916,98.220,53.354)
C8: (111.984,96.716,54.770)
O2': (113.846,101.061,54.582)
C6: (108.558,97.231,55.348)
C5: (109.932,97.179,55.074)
C4: (110.529,98.349,54.637)
P: (116.679,95.135,55.360)
C4': (115.173,98.486,54.023)
C2': (113.526,99.786,55.098)
C2: (108.638,99.457,54.728)
N1: (107.927,98.408,55.158)
N3: (109.929,99.536,54.442)
N6: (107.849,96.188,55.789)
N7: (110.862,96.153,55.153)
N9: (111.854,98.044,54.441)
O5': (115.659,96.261,54.879)
O3': (115.797,99.704,56.018)
OP1: (117.313,100.266,57.914)
OP2: (115.720,98.257,58.079)
C3': (112.885,102.288,59.543)
C1': (111.266,101.664,57.965)
C5': (114.814,101.989,57.891)
O4': (112.493,101.871,57.279)
C8: (112.005,99.227,58.172)
O2': (110.906,103.690,59.210)
C6: (109.045,97.371,58.474)
C5: (110.133,98.243,58.349)
C4: (109.847,99.591,58.226)
P: (115.997,99.639,57.611)
C4': (113.436,102.546,58.151)
C2': (111.385,102.365,59.317)
C2: (107.685,99.236,58.339)
N1: (107.808,97.909,58.465)
N3: (108.629,100.159,58.215)
N6: (109.163,96.050,58.597)
N7: (111.501,98.027,58.314)
N9: (111.060,100.223,58.112)
O5': (114.838,100.576,58.175)
O3': (113.342,103.218,60.509)
OP2: (115.720,98.257,58.079)
C3': (112.885,102.288,59.543)
C1': (111.266,101.664,57.965)
C5': (114.814,101.989,57.891)
O4': (112.493,101.871,57.279)
C8: (112.005,99.227,58.172)
O2': (110.906,103.690,59.210)
C6: (109.045,97.371,58.474)
C5: (110.133,98.243,58.349)
C4: (109.847,99.591,58.226)
P: (115.997,99.639,57.611)
C4': (113.436,102.546,58.151)
C2': (111.385,102.365,59.317)
C2: (107.685,99.236,58.339)
N1: (107.808,97.909,58.465)
N3: (108.629,100.159,58.215)
N6: (109.163,96.050,58.597)
N7: (111.501,98.027,58.314)
N9: (111.060,100.223,58.112)
O5': (114.838,100.576,58.175)
O3': (113.342,103.218,60.509)
Image (generated by PyMOL):