Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:9103:9104
Extra
PDB:
ATOM 1 O3' A A 102 46.641 58.604 114.938 1.00 48.90 O
ATOM 2 P A A 103 47.345 57.385 115.703 1.00 52.18 P
ATOM 3 OP1 A A 103 47.714 56.363 114.692 1.00 51.07 O
ATOM 4 OP2 A A 103 46.496 57.002 116.863 1.00 52.80 O
ATOM 5 O5' A A 103 48.686 58.033 116.253 1.00 51.12 O
ATOM 6 C5' A A 103 49.724 58.416 115.350 1.00 52.58 C
ATOM 7 C4' A A 103 50.870 59.015 116.111 1.00 54.19 C
ATOM 8 O4' A A 103 50.469 60.285 116.688 1.00 54.60 O
ATOM 9 C3' A A 103 51.303 58.212 117.319 1.00 54.99 C
ATOM 10 O3' A A 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 11 C2' A A 103 52.032 59.255 118.151 1.00 54.41 C
ATOM 12 O2' A A 103 53.337 59.542 117.690 1.00 52.51 O
ATOM 13 C1' A A 103 51.127 60.468 117.935 1.00 54.25 C
ATOM 14 N9 A A 103 50.118 60.569 118.989 1.00 54.17 N
ATOM 15 C8 A A 103 48.811 60.145 118.987 1.00 52.79 C
ATOM 16 N7 A A 103 48.182 60.378 120.113 1.00 52.46 N
ATOM 17 C5 A A 103 49.137 60.996 120.907 1.00 54.21 C
ATOM 18 C6 A A 103 49.101 61.492 122.222 1.00 55.68 C
ATOM 19 N6 A A 103 48.023 61.437 123.005 1.00 58.12 N
ATOM 20 N1 A A 103 50.228 62.054 122.713 1.00 55.75 N
ATOM 21 C2 A A 103 51.312 62.107 121.929 1.00 55.11 C
ATOM 22 N3 A A 103 51.470 61.675 120.684 1.00 54.05 N
ATOM 23 C4 A A 103 50.331 61.124 120.226 1.00 54.27 C
ATOM 24 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 25 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 26 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 27 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
TER
ATOM 1 O3' A B 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 2 P A B 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 3 OP1 A B 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 4 OP2 A B 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 5 O5' A B 104 52.939 56.403 119.245 1.00 53.23 O
ATOM 6 C5' A B 104 54.284 56.853 119.073 1.00 55.45 C
ATOM 7 C4' A B 104 54.829 57.387 120.366 1.00 57.53 C
ATOM 8 O4' A B 104 54.009 58.493 120.815 1.00 58.40 O
ATOM 9 C3' A B 104 54.810 56.440 121.546 1.00 59.20 C
ATOM 10 O3' A B 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 11 C2' A B 104 54.921 57.404 122.716 1.00 59.32 C
ATOM 12 O2' A B 104 56.247 57.866 122.909 1.00 59.42 O
ATOM 13 C1' A B 104 54.033 58.554 122.233 1.00 58.90 C
ATOM 14 N9 A B 104 52.658 58.460 122.719 1.00 59.06 N
ATOM 15 C8 A B 104 51.592 57.825 122.126 1.00 60.50 C
ATOM 16 N7 A B 104 50.475 57.917 122.809 1.00 59.81 N
ATOM 17 C5 A B 104 50.829 58.659 123.927 1.00 58.94 C
ATOM 18 C6 A B 104 50.095 59.098 125.040 1.00 58.18 C
ATOM 19 N6 A B 104 48.802 58.837 125.223 1.00 58.42 N
ATOM 20 N1 A B 104 50.742 59.821 125.973 1.00 57.74 N
ATOM 21 C2 A B 104 52.042 60.077 125.794 1.00 59.27 C
ATOM 22 N3 A B 104 52.845 59.716 124.794 1.00 59.57 N
ATOM 23 C4 A B 104 52.169 59.001 123.883 1.00 58.97 C
ATOM 24 P U B 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 25 OP1 U B 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 26 OP2 U B 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 27 O5' U B 105 55.111 54.219 123.509 1.00 65.79 O
TER
ATOM 2 P A A 103 47.345 57.385 115.703 1.00 52.18 P
ATOM 3 OP1 A A 103 47.714 56.363 114.692 1.00 51.07 O
ATOM 4 OP2 A A 103 46.496 57.002 116.863 1.00 52.80 O
ATOM 5 O5' A A 103 48.686 58.033 116.253 1.00 51.12 O
ATOM 6 C5' A A 103 49.724 58.416 115.350 1.00 52.58 C
ATOM 7 C4' A A 103 50.870 59.015 116.111 1.00 54.19 C
ATOM 8 O4' A A 103 50.469 60.285 116.688 1.00 54.60 O
ATOM 9 C3' A A 103 51.303 58.212 117.319 1.00 54.99 C
ATOM 10 O3' A A 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 11 C2' A A 103 52.032 59.255 118.151 1.00 54.41 C
ATOM 12 O2' A A 103 53.337 59.542 117.690 1.00 52.51 O
ATOM 13 C1' A A 103 51.127 60.468 117.935 1.00 54.25 C
ATOM 14 N9 A A 103 50.118 60.569 118.989 1.00 54.17 N
ATOM 15 C8 A A 103 48.811 60.145 118.987 1.00 52.79 C
ATOM 16 N7 A A 103 48.182 60.378 120.113 1.00 52.46 N
ATOM 17 C5 A A 103 49.137 60.996 120.907 1.00 54.21 C
ATOM 18 C6 A A 103 49.101 61.492 122.222 1.00 55.68 C
ATOM 19 N6 A A 103 48.023 61.437 123.005 1.00 58.12 N
ATOM 20 N1 A A 103 50.228 62.054 122.713 1.00 55.75 N
ATOM 21 C2 A A 103 51.312 62.107 121.929 1.00 55.11 C
ATOM 22 N3 A A 103 51.470 61.675 120.684 1.00 54.05 N
ATOM 23 C4 A A 103 50.331 61.124 120.226 1.00 54.27 C
ATOM 24 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 25 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 26 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 27 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
TER
ATOM 1 O3' A B 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 2 P A B 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 3 OP1 A B 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 4 OP2 A B 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 5 O5' A B 104 52.939 56.403 119.245 1.00 53.23 O
ATOM 6 C5' A B 104 54.284 56.853 119.073 1.00 55.45 C
ATOM 7 C4' A B 104 54.829 57.387 120.366 1.00 57.53 C
ATOM 8 O4' A B 104 54.009 58.493 120.815 1.00 58.40 O
ATOM 9 C3' A B 104 54.810 56.440 121.546 1.00 59.20 C
ATOM 10 O3' A B 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 11 C2' A B 104 54.921 57.404 122.716 1.00 59.32 C
ATOM 12 O2' A B 104 56.247 57.866 122.909 1.00 59.42 O
ATOM 13 C1' A B 104 54.033 58.554 122.233 1.00 58.90 C
ATOM 14 N9 A B 104 52.658 58.460 122.719 1.00 59.06 N
ATOM 15 C8 A B 104 51.592 57.825 122.126 1.00 60.50 C
ATOM 16 N7 A B 104 50.475 57.917 122.809 1.00 59.81 N
ATOM 17 C5 A B 104 50.829 58.659 123.927 1.00 58.94 C
ATOM 18 C6 A B 104 50.095 59.098 125.040 1.00 58.18 C
ATOM 19 N6 A B 104 48.802 58.837 125.223 1.00 58.42 N
ATOM 20 N1 A B 104 50.742 59.821 125.973 1.00 57.74 N
ATOM 21 C2 A B 104 52.042 60.077 125.794 1.00 59.27 C
ATOM 22 N3 A B 104 52.845 59.716 124.794 1.00 59.57 N
ATOM 23 C4 A B 104 52.169 59.001 123.883 1.00 58.97 C
ATOM 24 P U B 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 25 OP1 U B 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 26 OP2 U B 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 27 O5' U B 105 55.111 54.219 123.509 1.00 65.79 O
TER
Atoms:
OP1: (47.714,56.363,114.692)
OP2: (46.496,57.002,116.863)
C3': (51.303,58.212,117.319)
C1': (51.127,60.468,117.935)
C5': (49.724,58.416,115.350)
O4': (50.469,60.285,116.688)
C8: (48.811,60.145,118.987)
O2': (53.337,59.542,117.690)
C6: (49.101,61.492,122.222)
C5: (49.137,60.996,120.907)
C4: (50.331,61.124,120.226)
P: (47.345,57.385,115.703)
C4': (50.870,59.015,116.111)
C2': (52.032,59.255,118.151)
C2: (51.312,62.107,121.929)
N1: (50.228,62.054,122.713)
N3: (51.470,61.675,120.684)
N6: (48.023,61.437,123.005)
N7: (48.182,60.378,120.113)
N9: (50.118,60.569,118.989)
O5': (48.686,58.033,116.253)
O3': (52.085,57.082,116.986)
OP2: (46.496,57.002,116.863)
C3': (51.303,58.212,117.319)
C1': (51.127,60.468,117.935)
C5': (49.724,58.416,115.350)
O4': (50.469,60.285,116.688)
C8: (48.811,60.145,118.987)
O2': (53.337,59.542,117.690)
C6: (49.101,61.492,122.222)
C5: (49.137,60.996,120.907)
C4: (50.331,61.124,120.226)
P: (47.345,57.385,115.703)
C4': (50.870,59.015,116.111)
C2': (52.032,59.255,118.151)
C2: (51.312,62.107,121.929)
N1: (50.228,62.054,122.713)
N3: (51.470,61.675,120.684)
N6: (48.023,61.437,123.005)
N7: (48.182,60.378,120.113)
N9: (50.118,60.569,118.989)
O5': (48.686,58.033,116.253)
O3': (52.085,57.082,116.986)
OP1: (52.902,54.758,117.341)
OP2: (50.734,55.588,118.457)
C3': (54.810,56.440,121.546)
C1': (54.033,58.554,122.233)
C5': (54.284,56.853,119.073)
O4': (54.009,58.493,120.815)
C8: (51.592,57.825,122.126)
O2': (56.247,57.866,122.909)
C6: (50.095,59.098,125.040)
C5: (50.829,58.659,123.927)
C4: (52.169,59.001,123.883)
P: (52.123,55.843,117.998)
C4': (54.829,57.387,120.366)
C2': (54.921,57.404,122.716)
C2: (52.042,60.077,125.794)
N1: (50.742,59.821,125.973)
N3: (52.845,59.716,124.794)
N6: (48.802,58.837,125.223)
N7: (50.475,57.917,122.809)
N9: (52.658,58.460,122.719)
O5': (52.939,56.403,119.245)
O3': (55.891,55.526,121.505)
OP2: (50.734,55.588,118.457)
C3': (54.810,56.440,121.546)
C1': (54.033,58.554,122.233)
C5': (54.284,56.853,119.073)
O4': (54.009,58.493,120.815)
C8: (51.592,57.825,122.126)
O2': (56.247,57.866,122.909)
C6: (50.095,59.098,125.040)
C5: (50.829,58.659,123.927)
C4: (52.169,59.001,123.883)
P: (52.123,55.843,117.998)
C4': (54.829,57.387,120.366)
C2': (54.921,57.404,122.716)
C2: (52.042,60.077,125.794)
N1: (50.742,59.821,125.973)
N3: (52.845,59.716,124.794)
N6: (48.802,58.837,125.223)
N7: (50.475,57.917,122.809)
N9: (52.658,58.460,122.719)
O5': (52.939,56.403,119.245)
O3': (55.891,55.526,121.505)
Image (generated by PyMOL):