Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:196:197
Extra
PDB:
ATOM 1 O3' G A 95 52.820 -39.003 99.402 1.00 34.99 O
ATOM 2 P A A 96 54.219 -38.237 99.659 1.00 38.91 P
ATOM 3 OP1 A A 96 53.891 -37.019 100.482 1.00 38.85 O
ATOM 4 OP2 A A 96 54.861 -38.070 98.380 1.00 38.67 O
ATOM 5 O5' A A 96 55.041 -39.313 100.492 1.00 39.36 O
ATOM 6 C5' A A 96 54.868 -39.473 101.874 1.00 39.69 C
ATOM 7 C4' A A 96 54.176 -40.767 102.262 1.00 39.96 C
ATOM 8 O4' A A 96 53.513 -41.447 101.163 1.00 39.78 O
ATOM 9 C3' A A 96 55.009 -41.866 102.832 1.00 40.38 C
ATOM 10 O3' A A 96 55.607 -41.513 104.058 1.00 40.66 O
ATOM 11 C2' A A 96 53.934 -42.933 102.958 1.00 40.53 C
ATOM 12 O2' A A 96 53.007 -42.560 103.956 1.00 40.60 O
ATOM 13 C1' A A 96 53.234 -42.778 101.605 1.00 40.12 C
ATOM 14 N9 A A 96 53.727 -43.770 100.622 1.00 40.15 N
ATOM 15 C8 A A 96 54.410 -43.670 99.437 1.00 39.94 C
ATOM 16 N7 A A 96 54.684 -44.806 98.855 1.00 40.09 N
ATOM 17 C5 A A 96 54.187 -45.707 99.734 1.00 40.43 C
ATOM 18 C6 A A 96 54.182 -47.076 99.701 1.00 40.73 C
ATOM 19 N6 A A 96 54.705 -47.754 98.696 1.00 40.73 N
ATOM 20 N1 A A 96 53.596 -47.728 100.721 1.00 41.05 N
ATOM 21 C2 A A 96 53.053 -47.028 101.711 1.00 41.06 C
ATOM 22 N3 A A 96 53.002 -45.723 101.854 1.00 40.79 N
ATOM 23 C4 A A 96 53.596 -45.115 100.812 1.00 40.48 C
ATOM 24 P A A 97 57.130 -41.930 104.393 1.00 44.77 P
ATOM 25 OP1 A A 97 57.586 -41.031 105.487 1.00 44.91 O
ATOM 26 OP2 A A 97 57.892 -41.939 103.124 1.00 44.54 O
ATOM 27 O5' A A 97 56.937 -43.416 104.923 1.00 45.18 O
TER
ATOM 1 O3' A B 96 55.607 -41.513 104.058 1.00 40.66 O
ATOM 2 P A B 97 57.130 -41.930 104.393 1.00 44.77 P
ATOM 3 OP1 A B 97 57.586 -41.031 105.487 1.00 44.91 O
ATOM 4 OP2 A B 97 57.892 -41.939 103.124 1.00 44.54 O
ATOM 5 O5' A B 97 56.937 -43.416 104.923 1.00 45.18 O
ATOM 6 C5' A B 97 55.828 -43.751 105.742 1.00 45.34 C
ATOM 7 C4' A B 97 55.703 -45.238 105.916 1.00 45.69 C
ATOM 8 O4' A B 97 55.118 -45.848 104.724 1.00 45.47 O
ATOM 9 C3' A B 97 57.011 -45.983 106.104 1.00 46.05 C
ATOM 10 O3' A B 97 57.479 -45.890 107.418 1.00 46.42 O
ATOM 11 C2' A B 97 56.657 -47.409 105.657 1.00 46.22 C
ATOM 12 O2' A B 97 55.978 -48.120 106.683 1.00 46.58 O
ATOM 13 C1' A B 97 55.667 -47.138 104.521 1.00 45.77 C
ATOM 14 N9 A B 97 56.329 -47.138 103.220 1.00 45.53 N
ATOM 15 C8 A B 97 56.854 -46.039 102.603 1.00 45.19 C
ATOM 16 N7 A B 97 57.401 -46.317 101.449 1.00 45.04 N
ATOM 17 C5 A B 97 57.201 -47.668 101.299 1.00 45.30 C
ATOM 18 C6 A B 97 57.538 -48.523 100.274 1.00 45.32 C
ATOM 19 N6 A B 97 58.153 -48.139 99.173 1.00 45.06 N
ATOM 20 N1 A B 97 57.226 -49.811 100.446 1.00 45.64 N
ATOM 21 C2 A B 97 56.603 -50.172 101.576 1.00 45.92 C
ATOM 22 N3 A B 97 56.200 -49.458 102.615 1.00 45.93 N
ATOM 23 C4 A B 97 56.542 -48.194 102.393 1.00 45.61 C
ATOM 24 P G B 98 59.006 -46.179 107.766 1.00 45.54 P
ATOM 25 OP1 G B 98 59.170 -45.918 109.238 1.00 45.90 O
ATOM 26 OP2 G B 98 59.857 -45.406 106.795 1.00 45.21 O
ATOM 27 O5' G B 98 59.119 -47.722 107.480 1.00 45.84 O
TER
ATOM 2 P A A 96 54.219 -38.237 99.659 1.00 38.91 P
ATOM 3 OP1 A A 96 53.891 -37.019 100.482 1.00 38.85 O
ATOM 4 OP2 A A 96 54.861 -38.070 98.380 1.00 38.67 O
ATOM 5 O5' A A 96 55.041 -39.313 100.492 1.00 39.36 O
ATOM 6 C5' A A 96 54.868 -39.473 101.874 1.00 39.69 C
ATOM 7 C4' A A 96 54.176 -40.767 102.262 1.00 39.96 C
ATOM 8 O4' A A 96 53.513 -41.447 101.163 1.00 39.78 O
ATOM 9 C3' A A 96 55.009 -41.866 102.832 1.00 40.38 C
ATOM 10 O3' A A 96 55.607 -41.513 104.058 1.00 40.66 O
ATOM 11 C2' A A 96 53.934 -42.933 102.958 1.00 40.53 C
ATOM 12 O2' A A 96 53.007 -42.560 103.956 1.00 40.60 O
ATOM 13 C1' A A 96 53.234 -42.778 101.605 1.00 40.12 C
ATOM 14 N9 A A 96 53.727 -43.770 100.622 1.00 40.15 N
ATOM 15 C8 A A 96 54.410 -43.670 99.437 1.00 39.94 C
ATOM 16 N7 A A 96 54.684 -44.806 98.855 1.00 40.09 N
ATOM 17 C5 A A 96 54.187 -45.707 99.734 1.00 40.43 C
ATOM 18 C6 A A 96 54.182 -47.076 99.701 1.00 40.73 C
ATOM 19 N6 A A 96 54.705 -47.754 98.696 1.00 40.73 N
ATOM 20 N1 A A 96 53.596 -47.728 100.721 1.00 41.05 N
ATOM 21 C2 A A 96 53.053 -47.028 101.711 1.00 41.06 C
ATOM 22 N3 A A 96 53.002 -45.723 101.854 1.00 40.79 N
ATOM 23 C4 A A 96 53.596 -45.115 100.812 1.00 40.48 C
ATOM 24 P A A 97 57.130 -41.930 104.393 1.00 44.77 P
ATOM 25 OP1 A A 97 57.586 -41.031 105.487 1.00 44.91 O
ATOM 26 OP2 A A 97 57.892 -41.939 103.124 1.00 44.54 O
ATOM 27 O5' A A 97 56.937 -43.416 104.923 1.00 45.18 O
TER
ATOM 1 O3' A B 96 55.607 -41.513 104.058 1.00 40.66 O
ATOM 2 P A B 97 57.130 -41.930 104.393 1.00 44.77 P
ATOM 3 OP1 A B 97 57.586 -41.031 105.487 1.00 44.91 O
ATOM 4 OP2 A B 97 57.892 -41.939 103.124 1.00 44.54 O
ATOM 5 O5' A B 97 56.937 -43.416 104.923 1.00 45.18 O
ATOM 6 C5' A B 97 55.828 -43.751 105.742 1.00 45.34 C
ATOM 7 C4' A B 97 55.703 -45.238 105.916 1.00 45.69 C
ATOM 8 O4' A B 97 55.118 -45.848 104.724 1.00 45.47 O
ATOM 9 C3' A B 97 57.011 -45.983 106.104 1.00 46.05 C
ATOM 10 O3' A B 97 57.479 -45.890 107.418 1.00 46.42 O
ATOM 11 C2' A B 97 56.657 -47.409 105.657 1.00 46.22 C
ATOM 12 O2' A B 97 55.978 -48.120 106.683 1.00 46.58 O
ATOM 13 C1' A B 97 55.667 -47.138 104.521 1.00 45.77 C
ATOM 14 N9 A B 97 56.329 -47.138 103.220 1.00 45.53 N
ATOM 15 C8 A B 97 56.854 -46.039 102.603 1.00 45.19 C
ATOM 16 N7 A B 97 57.401 -46.317 101.449 1.00 45.04 N
ATOM 17 C5 A B 97 57.201 -47.668 101.299 1.00 45.30 C
ATOM 18 C6 A B 97 57.538 -48.523 100.274 1.00 45.32 C
ATOM 19 N6 A B 97 58.153 -48.139 99.173 1.00 45.06 N
ATOM 20 N1 A B 97 57.226 -49.811 100.446 1.00 45.64 N
ATOM 21 C2 A B 97 56.603 -50.172 101.576 1.00 45.92 C
ATOM 22 N3 A B 97 56.200 -49.458 102.615 1.00 45.93 N
ATOM 23 C4 A B 97 56.542 -48.194 102.393 1.00 45.61 C
ATOM 24 P G B 98 59.006 -46.179 107.766 1.00 45.54 P
ATOM 25 OP1 G B 98 59.170 -45.918 109.238 1.00 45.90 O
ATOM 26 OP2 G B 98 59.857 -45.406 106.795 1.00 45.21 O
ATOM 27 O5' G B 98 59.119 -47.722 107.480 1.00 45.84 O
TER
Atoms:
OP1: (53.891,-37.019,100.482)
OP2: (54.861,-38.070,98.380)
C3': (55.009,-41.866,102.832)
C1': (53.234,-42.778,101.605)
C5': (54.868,-39.473,101.874)
O4': (53.513,-41.447,101.163)
C8: (54.410,-43.670,99.437)
O2': (53.007,-42.560,103.956)
C6: (54.182,-47.076,99.701)
C5: (54.187,-45.707,99.734)
C4: (53.596,-45.115,100.812)
P: (54.219,-38.237,99.659)
C4': (54.176,-40.767,102.262)
C2': (53.934,-42.933,102.958)
C2: (53.053,-47.028,101.711)
N1: (53.596,-47.728,100.721)
N3: (53.002,-45.723,101.854)
N6: (54.705,-47.754,98.696)
N7: (54.684,-44.806,98.855)
N9: (53.727,-43.770,100.622)
O5': (55.041,-39.313,100.492)
O3': (55.607,-41.513,104.058)
OP2: (54.861,-38.070,98.380)
C3': (55.009,-41.866,102.832)
C1': (53.234,-42.778,101.605)
C5': (54.868,-39.473,101.874)
O4': (53.513,-41.447,101.163)
C8: (54.410,-43.670,99.437)
O2': (53.007,-42.560,103.956)
C6: (54.182,-47.076,99.701)
C5: (54.187,-45.707,99.734)
C4: (53.596,-45.115,100.812)
P: (54.219,-38.237,99.659)
C4': (54.176,-40.767,102.262)
C2': (53.934,-42.933,102.958)
C2: (53.053,-47.028,101.711)
N1: (53.596,-47.728,100.721)
N3: (53.002,-45.723,101.854)
N6: (54.705,-47.754,98.696)
N7: (54.684,-44.806,98.855)
N9: (53.727,-43.770,100.622)
O5': (55.041,-39.313,100.492)
O3': (55.607,-41.513,104.058)
OP1: (57.586,-41.031,105.487)
OP2: (57.892,-41.939,103.124)
C3': (57.011,-45.983,106.104)
C1': (55.667,-47.138,104.521)
C5': (55.828,-43.751,105.742)
O4': (55.118,-45.848,104.724)
C8: (56.854,-46.039,102.603)
O2': (55.978,-48.120,106.683)
C6: (57.538,-48.523,100.274)
C5: (57.201,-47.668,101.299)
C4: (56.542,-48.194,102.393)
P: (57.130,-41.930,104.393)
C4': (55.703,-45.238,105.916)
C2': (56.657,-47.409,105.657)
C2: (56.603,-50.172,101.576)
N1: (57.226,-49.811,100.446)
N3: (56.200,-49.458,102.615)
N6: (58.153,-48.139,99.173)
N7: (57.401,-46.317,101.449)
N9: (56.329,-47.138,103.220)
O5': (56.937,-43.416,104.923)
O3': (57.479,-45.890,107.418)
OP2: (57.892,-41.939,103.124)
C3': (57.011,-45.983,106.104)
C1': (55.667,-47.138,104.521)
C5': (55.828,-43.751,105.742)
O4': (55.118,-45.848,104.724)
C8: (56.854,-46.039,102.603)
O2': (55.978,-48.120,106.683)
C6: (57.538,-48.523,100.274)
C5: (57.201,-47.668,101.299)
C4: (56.542,-48.194,102.393)
P: (57.130,-41.930,104.393)
C4': (55.703,-45.238,105.916)
C2': (56.657,-47.409,105.657)
C2: (56.603,-50.172,101.576)
N1: (57.226,-49.811,100.446)
N3: (56.200,-49.458,102.615)
N6: (58.153,-48.139,99.173)
N7: (57.401,-46.317,101.449)
N9: (56.329,-47.138,103.220)
O5': (56.937,-43.416,104.923)
O3': (57.479,-45.890,107.418)
Image (generated by PyMOL):