Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A2:A3
Extra
PDB:
ATOM 1 O3' G A 1 51.092 -0.403 10.803 1.00 49.58 O
ATOM 2 P A A 2 49.511 -0.527 10.970 1.00 53.15 P
ATOM 3 OP1 A A 2 48.942 0.839 10.821 1.00 53.72 O
ATOM 4 OP2 A A 2 49.269 -1.287 12.228 1.00 51.71 O
ATOM 5 O5' A A 2 49.118 -1.423 9.709 1.00 51.89 O
ATOM 6 C5' A A 2 49.498 -1.006 8.396 1.00 50.62 C
ATOM 7 C4' A A 2 49.724 -2.195 7.497 1.00 49.80 C
ATOM 8 O4' A A 2 50.680 -3.092 8.116 1.00 48.46 O
ATOM 9 C3' A A 2 48.514 -3.081 7.238 1.00 50.31 C
ATOM 10 O3' A A 2 47.658 -2.553 6.221 1.00 52.88 O
ATOM 11 C2' A A 2 49.171 -4.383 6.786 1.00 48.93 C
ATOM 12 O2' A A 2 49.570 -4.394 5.430 1.00 44.94 O
ATOM 13 C1' A A 2 50.422 -4.416 7.672 1.00 48.04 C
ATOM 14 N9 A A 2 50.273 -5.289 8.833 1.00 46.57 N
ATOM 15 C8 A A 2 50.080 -4.947 10.149 1.00 46.14 C
ATOM 16 N7 A A 2 50.001 -5.981 10.958 1.00 45.16 N
ATOM 17 C5 A A 2 50.148 -7.076 10.118 1.00 45.26 C
ATOM 18 C6 A A 2 50.173 -8.461 10.361 1.00 45.02 C
ATOM 19 N6 A A 2 50.049 -9.002 11.582 1.00 45.61 N
ATOM 20 N1 A A 2 50.337 -9.284 9.296 1.00 44.36 N
ATOM 21 C2 A A 2 50.477 -8.741 8.077 1.00 43.12 C
ATOM 22 N3 A A 2 50.482 -7.457 7.723 1.00 44.15 N
ATOM 23 C4 A A 2 50.310 -6.666 8.803 1.00 45.84 C
ATOM 24 P A A 3 46.233 -1.898 6.611 1.00 53.81 P
ATOM 25 OP1 A A 3 45.478 -1.721 5.344 1.00 54.41 O
ATOM 26 OP2 A A 3 46.469 -0.729 7.501 1.00 53.57 O
ATOM 27 O5' A A 3 45.472 -3.012 7.453 1.00 56.06 O
TER
ATOM 1 O3' A B 2 47.658 -2.553 6.221 1.00 52.88 O
ATOM 2 P A B 3 46.233 -1.898 6.611 1.00 53.81 P
ATOM 3 OP1 A B 3 45.478 -1.721 5.344 1.00 54.41 O
ATOM 4 OP2 A B 3 46.469 -0.729 7.501 1.00 53.57 O
ATOM 5 O5' A B 3 45.472 -3.012 7.453 1.00 56.06 O
ATOM 6 C5' A B 3 44.665 -3.983 6.798 1.00 57.92 C
ATOM 7 C4' A B 3 45.531 -5.127 6.347 1.00 58.20 C
ATOM 8 O4' A B 3 46.250 -5.633 7.489 1.00 59.06 O
ATOM 9 C3' A B 3 44.806 -6.357 5.827 1.00 57.74 C
ATOM 10 O3' A B 3 44.431 -6.160 4.465 1.00 55.95 O
ATOM 11 C2' A B 3 45.876 -7.447 5.977 1.00 58.18 C
ATOM 12 O2' A B 3 46.767 -7.504 4.877 1.00 56.99 O
ATOM 13 C1' A B 3 46.665 -6.950 7.201 1.00 57.86 C
ATOM 14 N9 A B 3 46.621 -7.743 8.429 1.00 56.77 N
ATOM 15 C8 A B 3 46.427 -7.320 9.729 1.00 55.78 C
ATOM 16 N7 A B 3 46.507 -8.284 10.616 1.00 54.25 N
ATOM 17 C5 A B 3 46.755 -9.418 9.850 1.00 57.05 C
ATOM 18 C6 A B 3 46.956 -10.774 10.189 1.00 58.69 C
ATOM 19 N6 A B 3 46.945 -11.244 11.445 1.00 58.88 N
ATOM 20 N1 A B 3 47.181 -11.645 9.174 1.00 59.49 N
ATOM 21 C2 A B 3 47.206 -11.177 7.912 1.00 57.60 C
ATOM 22 N3 A B 3 47.038 -9.935 7.472 1.00 55.39 N
ATOM 23 C4 A B 3 46.815 -9.097 8.500 1.00 56.31 C
ATOM 24 P C B 4 42.880 -6.228 4.044 1.00 53.47 P
ATOM 25 OP1 C B 4 42.592 -5.031 3.203 1.00 52.65 O
ATOM 26 OP2 C B 4 42.064 -6.495 5.265 1.00 51.15 O
ATOM 27 O5' C B 4 42.799 -7.516 3.114 1.00 47.34 O
TER
ATOM 2 P A A 2 49.511 -0.527 10.970 1.00 53.15 P
ATOM 3 OP1 A A 2 48.942 0.839 10.821 1.00 53.72 O
ATOM 4 OP2 A A 2 49.269 -1.287 12.228 1.00 51.71 O
ATOM 5 O5' A A 2 49.118 -1.423 9.709 1.00 51.89 O
ATOM 6 C5' A A 2 49.498 -1.006 8.396 1.00 50.62 C
ATOM 7 C4' A A 2 49.724 -2.195 7.497 1.00 49.80 C
ATOM 8 O4' A A 2 50.680 -3.092 8.116 1.00 48.46 O
ATOM 9 C3' A A 2 48.514 -3.081 7.238 1.00 50.31 C
ATOM 10 O3' A A 2 47.658 -2.553 6.221 1.00 52.88 O
ATOM 11 C2' A A 2 49.171 -4.383 6.786 1.00 48.93 C
ATOM 12 O2' A A 2 49.570 -4.394 5.430 1.00 44.94 O
ATOM 13 C1' A A 2 50.422 -4.416 7.672 1.00 48.04 C
ATOM 14 N9 A A 2 50.273 -5.289 8.833 1.00 46.57 N
ATOM 15 C8 A A 2 50.080 -4.947 10.149 1.00 46.14 C
ATOM 16 N7 A A 2 50.001 -5.981 10.958 1.00 45.16 N
ATOM 17 C5 A A 2 50.148 -7.076 10.118 1.00 45.26 C
ATOM 18 C6 A A 2 50.173 -8.461 10.361 1.00 45.02 C
ATOM 19 N6 A A 2 50.049 -9.002 11.582 1.00 45.61 N
ATOM 20 N1 A A 2 50.337 -9.284 9.296 1.00 44.36 N
ATOM 21 C2 A A 2 50.477 -8.741 8.077 1.00 43.12 C
ATOM 22 N3 A A 2 50.482 -7.457 7.723 1.00 44.15 N
ATOM 23 C4 A A 2 50.310 -6.666 8.803 1.00 45.84 C
ATOM 24 P A A 3 46.233 -1.898 6.611 1.00 53.81 P
ATOM 25 OP1 A A 3 45.478 -1.721 5.344 1.00 54.41 O
ATOM 26 OP2 A A 3 46.469 -0.729 7.501 1.00 53.57 O
ATOM 27 O5' A A 3 45.472 -3.012 7.453 1.00 56.06 O
TER
ATOM 1 O3' A B 2 47.658 -2.553 6.221 1.00 52.88 O
ATOM 2 P A B 3 46.233 -1.898 6.611 1.00 53.81 P
ATOM 3 OP1 A B 3 45.478 -1.721 5.344 1.00 54.41 O
ATOM 4 OP2 A B 3 46.469 -0.729 7.501 1.00 53.57 O
ATOM 5 O5' A B 3 45.472 -3.012 7.453 1.00 56.06 O
ATOM 6 C5' A B 3 44.665 -3.983 6.798 1.00 57.92 C
ATOM 7 C4' A B 3 45.531 -5.127 6.347 1.00 58.20 C
ATOM 8 O4' A B 3 46.250 -5.633 7.489 1.00 59.06 O
ATOM 9 C3' A B 3 44.806 -6.357 5.827 1.00 57.74 C
ATOM 10 O3' A B 3 44.431 -6.160 4.465 1.00 55.95 O
ATOM 11 C2' A B 3 45.876 -7.447 5.977 1.00 58.18 C
ATOM 12 O2' A B 3 46.767 -7.504 4.877 1.00 56.99 O
ATOM 13 C1' A B 3 46.665 -6.950 7.201 1.00 57.86 C
ATOM 14 N9 A B 3 46.621 -7.743 8.429 1.00 56.77 N
ATOM 15 C8 A B 3 46.427 -7.320 9.729 1.00 55.78 C
ATOM 16 N7 A B 3 46.507 -8.284 10.616 1.00 54.25 N
ATOM 17 C5 A B 3 46.755 -9.418 9.850 1.00 57.05 C
ATOM 18 C6 A B 3 46.956 -10.774 10.189 1.00 58.69 C
ATOM 19 N6 A B 3 46.945 -11.244 11.445 1.00 58.88 N
ATOM 20 N1 A B 3 47.181 -11.645 9.174 1.00 59.49 N
ATOM 21 C2 A B 3 47.206 -11.177 7.912 1.00 57.60 C
ATOM 22 N3 A B 3 47.038 -9.935 7.472 1.00 55.39 N
ATOM 23 C4 A B 3 46.815 -9.097 8.500 1.00 56.31 C
ATOM 24 P C B 4 42.880 -6.228 4.044 1.00 53.47 P
ATOM 25 OP1 C B 4 42.592 -5.031 3.203 1.00 52.65 O
ATOM 26 OP2 C B 4 42.064 -6.495 5.265 1.00 51.15 O
ATOM 27 O5' C B 4 42.799 -7.516 3.114 1.00 47.34 O
TER
Atoms:
OP1: (48.942,0.839,10.821)
OP2: (49.269,-1.287,12.228)
C3': (48.514,-3.081,7.238)
C1': (50.422,-4.416,7.672)
C5': (49.498,-1.006,8.396)
O4': (50.680,-3.092,8.116)
C8: (50.080,-4.947,10.149)
O2': (49.570,-4.394,5.430)
C6: (50.173,-8.461,10.361)
C5: (50.148,-7.076,10.118)
C4: (50.310,-6.666,8.803)
P: (49.511,-0.527,10.970)
C4': (49.724,-2.195,7.497)
C2': (49.171,-4.383,6.786)
C2: (50.477,-8.741,8.077)
N1: (50.337,-9.284,9.296)
N3: (50.482,-7.457,7.723)
N6: (50.049,-9.002,11.582)
N7: (50.001,-5.981,10.958)
N9: (50.273,-5.289,8.833)
O5': (49.118,-1.423,9.709)
O3': (47.658,-2.553,6.221)
OP2: (49.269,-1.287,12.228)
C3': (48.514,-3.081,7.238)
C1': (50.422,-4.416,7.672)
C5': (49.498,-1.006,8.396)
O4': (50.680,-3.092,8.116)
C8: (50.080,-4.947,10.149)
O2': (49.570,-4.394,5.430)
C6: (50.173,-8.461,10.361)
C5: (50.148,-7.076,10.118)
C4: (50.310,-6.666,8.803)
P: (49.511,-0.527,10.970)
C4': (49.724,-2.195,7.497)
C2': (49.171,-4.383,6.786)
C2: (50.477,-8.741,8.077)
N1: (50.337,-9.284,9.296)
N3: (50.482,-7.457,7.723)
N6: (50.049,-9.002,11.582)
N7: (50.001,-5.981,10.958)
N9: (50.273,-5.289,8.833)
O5': (49.118,-1.423,9.709)
O3': (47.658,-2.553,6.221)
OP1: (45.478,-1.721,5.344)
OP2: (46.469,-0.729,7.501)
C3': (44.806,-6.357,5.827)
C1': (46.665,-6.950,7.201)
C5': (44.665,-3.983,6.798)
O4': (46.250,-5.633,7.489)
C8: (46.427,-7.320,9.729)
O2': (46.767,-7.504,4.877)
C6: (46.956,-10.774,10.189)
C5: (46.755,-9.418,9.850)
C4: (46.815,-9.097,8.500)
P: (46.233,-1.898,6.611)
C4': (45.531,-5.127,6.347)
C2': (45.876,-7.447,5.977)
C2: (47.206,-11.177,7.912)
N1: (47.181,-11.645,9.174)
N3: (47.038,-9.935,7.472)
N6: (46.945,-11.244,11.445)
N7: (46.507,-8.284,10.616)
N9: (46.621,-7.743,8.429)
O5': (45.472,-3.012,7.453)
O3': (44.431,-6.160,4.465)
OP2: (46.469,-0.729,7.501)
C3': (44.806,-6.357,5.827)
C1': (46.665,-6.950,7.201)
C5': (44.665,-3.983,6.798)
O4': (46.250,-5.633,7.489)
C8: (46.427,-7.320,9.729)
O2': (46.767,-7.504,4.877)
C6: (46.956,-10.774,10.189)
C5: (46.755,-9.418,9.850)
C4: (46.815,-9.097,8.500)
P: (46.233,-1.898,6.611)
C4': (45.531,-5.127,6.347)
C2': (45.876,-7.447,5.977)
C2: (47.206,-11.177,7.912)
N1: (47.181,-11.645,9.174)
N3: (47.038,-9.935,7.472)
N6: (46.945,-11.244,11.445)
N7: (46.507,-8.284,10.616)
N9: (46.621,-7.743,8.429)
O5': (45.472,-3.012,7.453)
O3': (44.431,-6.160,4.465)
Image (generated by PyMOL):