Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A78:A35
Extra
PDB:
ATOM 1 O3' G A 77 4.839 -24.032 18.349 1.00 38.85 O
ATOM 2 P C A 78 4.358 -25.326 19.171 1.00 38.50 P
ATOM 3 OP1 C A 78 5.562 -25.902 19.821 1.00 42.00 O
ATOM 4 OP2 C A 78 3.575 -26.174 18.244 1.00 28.86 O
ATOM 5 O5' C A 78 3.397 -24.696 20.272 1.00 43.19 O
ATOM 6 C5' C A 78 2.870 -25.486 21.325 1.00 34.40 C
ATOM 7 C4' C A 78 3.564 -25.199 22.630 1.00 36.60 C
ATOM 8 O4' C A 78 2.610 -24.606 23.558 1.00 31.20 O
ATOM 9 C3' C A 78 4.137 -26.425 23.339 1.00 32.39 C
ATOM 10 O3' C A 78 5.300 -26.043 24.077 1.00 32.58 O
ATOM 11 C2' C A 78 3.019 -26.783 24.307 1.00 34.58 C
ATOM 12 O2' C A 78 3.422 -27.568 25.408 1.00 40.84 O
ATOM 13 C1' C A 78 2.555 -25.392 24.731 1.00 33.41 C
ATOM 14 N1 C A 78 1.179 -25.348 25.273 1.00 29.61 N
ATOM 15 C2 C A 78 0.918 -24.447 26.307 1.00 26.91 C
ATOM 16 O2 C A 78 1.837 -23.711 26.695 1.00 26.71 O
ATOM 17 N3 C A 78 -0.322 -24.393 26.844 1.00 25.29 N
ATOM 18 C4 C A 78 -1.277 -25.206 26.392 1.00 28.05 C
ATOM 19 N4 C A 78 -2.485 -25.124 26.953 1.00 27.96 N
ATOM 20 C5 C A 78 -1.036 -26.142 25.343 1.00 28.74 C
ATOM 21 C6 C A 78 0.197 -26.185 24.822 1.00 31.33 C
ATOM 22 P A A 79 6.607 -26.981 24.076 1.00 45.37 P
ATOM 23 OP1 A A 79 7.591 -26.356 23.158 1.00 43.69 O
ATOM 24 OP2 A A 79 6.151 -28.369 23.799 1.00 30.95 O
ATOM 25 O5' A A 79 7.124 -26.871 25.577 1.00 40.63 O
TER
ATOM 1 O3' U B 34 -5.894 -24.985 26.735 1.00 28.62 O
ATOM 2 P G B 35 -5.798 -26.525 27.173 1.00 28.96 P
ATOM 3 OP1 G B 35 -7.163 -27.098 27.051 1.00 28.50 O
ATOM 4 OP2 G B 35 -5.120 -26.565 28.494 1.00 32.23 O
ATOM 5 O5' G B 35 -4.846 -27.144 26.058 1.00 31.59 O
ATOM 6 C5' G B 35 -5.071 -28.452 25.542 1.00 30.68 C
ATOM 7 C4' G B 35 -5.120 -28.450 24.034 1.00 33.38 C
ATOM 8 O4' G B 35 -3.846 -27.977 23.513 1.00 31.25 O
ATOM 9 C3' G B 35 -5.379 -29.809 23.377 1.00 31.37 C
ATOM 10 O3' G B 35 -6.241 -29.636 22.256 1.00 25.95 O
ATOM 11 C2' G B 35 -3.994 -30.228 22.890 1.00 34.02 C
ATOM 12 O2' G B 35 -4.005 -31.106 21.783 1.00 29.99 O
ATOM 13 C1' G B 35 -3.376 -28.882 22.534 1.00 34.55 C
ATOM 14 N9 G B 35 -1.909 -28.869 22.554 1.00 36.97 N
ATOM 15 C8 G B 35 -1.077 -29.294 23.561 1.00 37.01 C
ATOM 16 N7 G B 35 0.190 -29.160 23.272 1.00 37.09 N
ATOM 17 C5 G B 35 0.197 -28.615 21.995 1.00 37.99 C
ATOM 18 C6 G B 35 1.283 -28.254 21.156 1.00 37.41 C
ATOM 19 O6 G B 35 2.495 -28.342 21.385 1.00 36.45 O
ATOM 20 N1 G B 35 0.842 -27.738 19.942 1.00 40.48 N
ATOM 21 C2 G B 35 -0.475 -27.591 19.575 1.00 40.81 C
ATOM 22 N2 G B 35 -0.700 -27.072 18.355 1.00 33.55 N
ATOM 23 N3 G B 35 -1.496 -27.932 20.348 1.00 36.92 N
ATOM 24 C4 G B 35 -1.090 -28.432 21.535 1.00 37.41 C
ATOM 25 P G B 36 -7.820 -29.901 22.400 1.00 38.88 P
ATOM 26 OP1 G B 36 -8.379 -29.966 21.028 1.00 40.09 O
ATOM 27 OP2 G B 36 -8.351 -28.881 23.338 1.00 36.35 O
ATOM 28 O5' G B 36 -7.880 -31.340 23.078 1.00 38.14 O
TER
ATOM 2 P C A 78 4.358 -25.326 19.171 1.00 38.50 P
ATOM 3 OP1 C A 78 5.562 -25.902 19.821 1.00 42.00 O
ATOM 4 OP2 C A 78 3.575 -26.174 18.244 1.00 28.86 O
ATOM 5 O5' C A 78 3.397 -24.696 20.272 1.00 43.19 O
ATOM 6 C5' C A 78 2.870 -25.486 21.325 1.00 34.40 C
ATOM 7 C4' C A 78 3.564 -25.199 22.630 1.00 36.60 C
ATOM 8 O4' C A 78 2.610 -24.606 23.558 1.00 31.20 O
ATOM 9 C3' C A 78 4.137 -26.425 23.339 1.00 32.39 C
ATOM 10 O3' C A 78 5.300 -26.043 24.077 1.00 32.58 O
ATOM 11 C2' C A 78 3.019 -26.783 24.307 1.00 34.58 C
ATOM 12 O2' C A 78 3.422 -27.568 25.408 1.00 40.84 O
ATOM 13 C1' C A 78 2.555 -25.392 24.731 1.00 33.41 C
ATOM 14 N1 C A 78 1.179 -25.348 25.273 1.00 29.61 N
ATOM 15 C2 C A 78 0.918 -24.447 26.307 1.00 26.91 C
ATOM 16 O2 C A 78 1.837 -23.711 26.695 1.00 26.71 O
ATOM 17 N3 C A 78 -0.322 -24.393 26.844 1.00 25.29 N
ATOM 18 C4 C A 78 -1.277 -25.206 26.392 1.00 28.05 C
ATOM 19 N4 C A 78 -2.485 -25.124 26.953 1.00 27.96 N
ATOM 20 C5 C A 78 -1.036 -26.142 25.343 1.00 28.74 C
ATOM 21 C6 C A 78 0.197 -26.185 24.822 1.00 31.33 C
ATOM 22 P A A 79 6.607 -26.981 24.076 1.00 45.37 P
ATOM 23 OP1 A A 79 7.591 -26.356 23.158 1.00 43.69 O
ATOM 24 OP2 A A 79 6.151 -28.369 23.799 1.00 30.95 O
ATOM 25 O5' A A 79 7.124 -26.871 25.577 1.00 40.63 O
TER
ATOM 1 O3' U B 34 -5.894 -24.985 26.735 1.00 28.62 O
ATOM 2 P G B 35 -5.798 -26.525 27.173 1.00 28.96 P
ATOM 3 OP1 G B 35 -7.163 -27.098 27.051 1.00 28.50 O
ATOM 4 OP2 G B 35 -5.120 -26.565 28.494 1.00 32.23 O
ATOM 5 O5' G B 35 -4.846 -27.144 26.058 1.00 31.59 O
ATOM 6 C5' G B 35 -5.071 -28.452 25.542 1.00 30.68 C
ATOM 7 C4' G B 35 -5.120 -28.450 24.034 1.00 33.38 C
ATOM 8 O4' G B 35 -3.846 -27.977 23.513 1.00 31.25 O
ATOM 9 C3' G B 35 -5.379 -29.809 23.377 1.00 31.37 C
ATOM 10 O3' G B 35 -6.241 -29.636 22.256 1.00 25.95 O
ATOM 11 C2' G B 35 -3.994 -30.228 22.890 1.00 34.02 C
ATOM 12 O2' G B 35 -4.005 -31.106 21.783 1.00 29.99 O
ATOM 13 C1' G B 35 -3.376 -28.882 22.534 1.00 34.55 C
ATOM 14 N9 G B 35 -1.909 -28.869 22.554 1.00 36.97 N
ATOM 15 C8 G B 35 -1.077 -29.294 23.561 1.00 37.01 C
ATOM 16 N7 G B 35 0.190 -29.160 23.272 1.00 37.09 N
ATOM 17 C5 G B 35 0.197 -28.615 21.995 1.00 37.99 C
ATOM 18 C6 G B 35 1.283 -28.254 21.156 1.00 37.41 C
ATOM 19 O6 G B 35 2.495 -28.342 21.385 1.00 36.45 O
ATOM 20 N1 G B 35 0.842 -27.738 19.942 1.00 40.48 N
ATOM 21 C2 G B 35 -0.475 -27.591 19.575 1.00 40.81 C
ATOM 22 N2 G B 35 -0.700 -27.072 18.355 1.00 33.55 N
ATOM 23 N3 G B 35 -1.496 -27.932 20.348 1.00 36.92 N
ATOM 24 C4 G B 35 -1.090 -28.432 21.535 1.00 37.41 C
ATOM 25 P G B 36 -7.820 -29.901 22.400 1.00 38.88 P
ATOM 26 OP1 G B 36 -8.379 -29.966 21.028 1.00 40.09 O
ATOM 27 OP2 G B 36 -8.351 -28.881 23.338 1.00 36.35 O
ATOM 28 O5' G B 36 -7.880 -31.340 23.078 1.00 38.14 O
TER
Atoms:
C2: (0.918,-24.447,26.307)
OP1: (5.562,-25.902,19.821)
OP2: (3.575,-26.174,18.244)
C4: (-1.277,-25.206,26.392)
O5': (3.397,-24.696,20.272)
C3': (4.137,-26.425,23.339)
C1': (2.555,-25.392,24.731)
O4': (2.610,-24.606,23.558)
C5': (2.870,-25.486,21.325)
P: (4.358,-25.326,19.171)
O2: (1.837,-23.711,26.695)
C4': (3.564,-25.199,22.630)
C2': (3.019,-26.783,24.307)
O2': (3.422,-27.568,25.408)
N1: (1.179,-25.348,25.273)
N3: (-0.322,-24.393,26.844)
N4: (-2.485,-25.124,26.953)
C6: (0.197,-26.185,24.822)
C5: (-1.036,-26.142,25.343)
O3': (5.300,-26.043,24.077)
OP1: (5.562,-25.902,19.821)
OP2: (3.575,-26.174,18.244)
C4: (-1.277,-25.206,26.392)
O5': (3.397,-24.696,20.272)
C3': (4.137,-26.425,23.339)
C1': (2.555,-25.392,24.731)
O4': (2.610,-24.606,23.558)
C5': (2.870,-25.486,21.325)
P: (4.358,-25.326,19.171)
O2: (1.837,-23.711,26.695)
C4': (3.564,-25.199,22.630)
C2': (3.019,-26.783,24.307)
O2': (3.422,-27.568,25.408)
N1: (1.179,-25.348,25.273)
N3: (-0.322,-24.393,26.844)
N4: (-2.485,-25.124,26.953)
C6: (0.197,-26.185,24.822)
C5: (-1.036,-26.142,25.343)
O3': (5.300,-26.043,24.077)
OP1: (-7.163,-27.098,27.051)
OP2: (-5.120,-26.565,28.494)
C3': (-5.379,-29.809,23.377)
C1': (-3.376,-28.882,22.534)
C5': (-5.071,-28.452,25.542)
O6: (2.495,-28.342,21.385)
O4': (-3.846,-27.977,23.513)
C8: (-1.077,-29.294,23.561)
C2: (-0.475,-27.591,19.575)
C6: (1.283,-28.254,21.156)
C5: (0.197,-28.615,21.995)
C4: (-1.090,-28.432,21.535)
P: (-5.798,-26.525,27.173)
C4': (-5.120,-28.450,24.034)
C2': (-3.994,-30.228,22.890)
O2': (-4.005,-31.106,21.783)
N1: (0.842,-27.738,19.942)
N2: (-0.700,-27.072,18.355)
N3: (-1.496,-27.932,20.348)
N7: (0.190,-29.160,23.272)
N9: (-1.909,-28.869,22.554)
O5': (-4.846,-27.144,26.058)
O3': (-6.241,-29.636,22.256)
OP2: (-5.120,-26.565,28.494)
C3': (-5.379,-29.809,23.377)
C1': (-3.376,-28.882,22.534)
C5': (-5.071,-28.452,25.542)
O6: (2.495,-28.342,21.385)
O4': (-3.846,-27.977,23.513)
C8: (-1.077,-29.294,23.561)
C2: (-0.475,-27.591,19.575)
C6: (1.283,-28.254,21.156)
C5: (0.197,-28.615,21.995)
C4: (-1.090,-28.432,21.535)
P: (-5.798,-26.525,27.173)
C4': (-5.120,-28.450,24.034)
C2': (-3.994,-30.228,22.890)
O2': (-4.005,-31.106,21.783)
N1: (0.842,-27.738,19.942)
N2: (-0.700,-27.072,18.355)
N3: (-1.496,-27.932,20.348)
N7: (0.190,-29.160,23.272)
N9: (-1.909,-28.869,22.554)
O5': (-4.846,-27.144,26.058)
O3': (-6.241,-29.636,22.256)
Image (generated by PyMOL):