Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKI:A39:A11
Extra
PDB:
ATOM 1 O3' C A 38 -5.962 -1.909 -47.598 1.00 17.89 O
ATOM 2 P C A 39 -6.312 -3.238 -46.784 1.00 20.89 P
ATOM 3 OP1 C A 39 -7.783 -3.350 -46.645 1.00 21.47 O
ATOM 4 OP2 C A 39 -5.441 -3.304 -45.589 1.00 21.03 O
ATOM 5 O5' C A 39 -5.750 -4.330 -47.798 1.00 20.62 O
ATOM 6 C5' C A 39 -6.168 -5.662 -47.799 1.00 20.28 C
ATOM 7 C4' C A 39 -5.363 -6.363 -48.869 1.00 19.36 C
ATOM 8 O4' C A 39 -5.126 -5.450 -49.971 1.00 19.18 O
ATOM 9 C3' C A 39 -3.961 -6.743 -48.448 1.00 18.93 C
ATOM 10 O3' C A 39 -3.990 -7.925 -47.649 1.00 19.30 O
ATOM 11 C2' C A 39 -3.303 -6.950 -49.806 1.00 18.88 C
ATOM 12 O2' C A 39 -3.645 -8.188 -50.411 1.00 20.07 O
ATOM 13 C1' C A 39 -3.905 -5.792 -50.606 1.00 18.58 C
ATOM 14 N1 C A 39 -3.011 -4.566 -50.735 1.00 17.63 N
ATOM 15 C2 C A 39 -1.845 -4.635 -51.516 1.00 17.48 C
ATOM 16 O2 C A 39 -1.553 -5.692 -52.088 1.00 18.27 O
ATOM 17 N3 C A 39 -1.057 -3.535 -51.626 1.00 17.20 N
ATOM 18 C4 C A 39 -1.389 -2.394 -51.010 1.00 16.82 C
ATOM 19 N4 C A 39 -0.574 -1.342 -51.167 1.00 16.33 N
ATOM 20 C5 C A 39 -2.573 -2.291 -50.213 1.00 16.85 C
ATOM 21 C6 C A 39 -3.345 -3.388 -50.106 1.00 16.99 C
ATOM 22 P U A 40 -2.985 -8.070 -46.415 1.00 18.77 P
ATOM 23 OP1 U A 40 -3.499 -9.134 -45.526 1.00 19.50 O
ATOM 24 OP2 U A 40 -2.719 -6.715 -45.864 1.00 18.09 O
ATOM 25 O5' U A 40 -1.671 -8.597 -47.146 1.00 18.65 O
TER
ATOM 1 O3' A B 10 -0.536 2.379 -47.614 1.00 17.04 O
ATOM 2 P G B 11 -1.186 0.951 -47.982 1.00 18.25 P
ATOM 3 OP1 G B 11 -0.400 -0.080 -47.266 1.00 18.26 O
ATOM 4 OP2 G B 11 -1.341 0.816 -49.445 1.00 18.03 O
ATOM 5 O5' G B 11 -2.655 1.050 -47.358 1.00 17.80 O
ATOM 6 C5' G B 11 -2.867 1.054 -45.952 1.00 18.15 C
ATOM 7 C4' G B 11 -3.850 2.155 -45.614 1.00 18.13 C
ATOM 8 O4' G B 11 -5.144 1.842 -46.170 1.00 17.98 O
ATOM 9 C3' G B 11 -4.087 2.434 -44.134 1.00 18.41 C
ATOM 10 O3' G B 11 -3.649 3.742 -43.880 1.00 19.31 O
ATOM 11 C2' G B 11 -5.607 2.367 -43.957 1.00 17.63 C
ATOM 12 O2' G B 11 -6.097 3.435 -43.157 1.00 16.52 O
ATOM 13 C1' G B 11 -6.094 2.528 -45.390 1.00 17.37 C
ATOM 14 N9 G B 11 -7.405 1.962 -45.668 1.00 17.47 N
ATOM 15 C8 G B 11 -7.748 0.630 -45.657 1.00 18.39 C
ATOM 16 N7 G B 11 -8.995 0.408 -45.958 1.00 19.18 N
ATOM 17 C5 G B 11 -9.515 1.671 -46.183 1.00 18.29 C
ATOM 18 C6 G B 11 -10.826 2.057 -46.543 1.00 19.61 C
ATOM 19 O6 G B 11 -11.806 1.328 -46.737 1.00 19.43 O
ATOM 20 N1 G B 11 -10.944 3.439 -46.681 1.00 18.59 N
ATOM 21 C2 G B 11 -9.915 4.336 -46.489 1.00 17.77 C
ATOM 22 N2 G B 11 -10.216 5.631 -46.663 1.00 17.53 N
ATOM 23 N3 G B 11 -8.677 3.985 -46.149 1.00 17.21 N
ATOM 24 C4 G B 11 -8.547 2.643 -46.016 1.00 17.47 C
ATOM 25 P G B 12 -2.333 4.054 -43.039 1.00 19.39 P
ATOM 26 OP1 G B 12 -1.207 3.303 -43.649 1.00 20.36 O
ATOM 27 OP2 G B 12 -2.636 3.911 -41.600 1.00 19.47 O
ATOM 28 O5' G B 12 -2.204 5.622 -43.339 1.00 17.73 O
TER
ATOM 2 P C A 39 -6.312 -3.238 -46.784 1.00 20.89 P
ATOM 3 OP1 C A 39 -7.783 -3.350 -46.645 1.00 21.47 O
ATOM 4 OP2 C A 39 -5.441 -3.304 -45.589 1.00 21.03 O
ATOM 5 O5' C A 39 -5.750 -4.330 -47.798 1.00 20.62 O
ATOM 6 C5' C A 39 -6.168 -5.662 -47.799 1.00 20.28 C
ATOM 7 C4' C A 39 -5.363 -6.363 -48.869 1.00 19.36 C
ATOM 8 O4' C A 39 -5.126 -5.450 -49.971 1.00 19.18 O
ATOM 9 C3' C A 39 -3.961 -6.743 -48.448 1.00 18.93 C
ATOM 10 O3' C A 39 -3.990 -7.925 -47.649 1.00 19.30 O
ATOM 11 C2' C A 39 -3.303 -6.950 -49.806 1.00 18.88 C
ATOM 12 O2' C A 39 -3.645 -8.188 -50.411 1.00 20.07 O
ATOM 13 C1' C A 39 -3.905 -5.792 -50.606 1.00 18.58 C
ATOM 14 N1 C A 39 -3.011 -4.566 -50.735 1.00 17.63 N
ATOM 15 C2 C A 39 -1.845 -4.635 -51.516 1.00 17.48 C
ATOM 16 O2 C A 39 -1.553 -5.692 -52.088 1.00 18.27 O
ATOM 17 N3 C A 39 -1.057 -3.535 -51.626 1.00 17.20 N
ATOM 18 C4 C A 39 -1.389 -2.394 -51.010 1.00 16.82 C
ATOM 19 N4 C A 39 -0.574 -1.342 -51.167 1.00 16.33 N
ATOM 20 C5 C A 39 -2.573 -2.291 -50.213 1.00 16.85 C
ATOM 21 C6 C A 39 -3.345 -3.388 -50.106 1.00 16.99 C
ATOM 22 P U A 40 -2.985 -8.070 -46.415 1.00 18.77 P
ATOM 23 OP1 U A 40 -3.499 -9.134 -45.526 1.00 19.50 O
ATOM 24 OP2 U A 40 -2.719 -6.715 -45.864 1.00 18.09 O
ATOM 25 O5' U A 40 -1.671 -8.597 -47.146 1.00 18.65 O
TER
ATOM 1 O3' A B 10 -0.536 2.379 -47.614 1.00 17.04 O
ATOM 2 P G B 11 -1.186 0.951 -47.982 1.00 18.25 P
ATOM 3 OP1 G B 11 -0.400 -0.080 -47.266 1.00 18.26 O
ATOM 4 OP2 G B 11 -1.341 0.816 -49.445 1.00 18.03 O
ATOM 5 O5' G B 11 -2.655 1.050 -47.358 1.00 17.80 O
ATOM 6 C5' G B 11 -2.867 1.054 -45.952 1.00 18.15 C
ATOM 7 C4' G B 11 -3.850 2.155 -45.614 1.00 18.13 C
ATOM 8 O4' G B 11 -5.144 1.842 -46.170 1.00 17.98 O
ATOM 9 C3' G B 11 -4.087 2.434 -44.134 1.00 18.41 C
ATOM 10 O3' G B 11 -3.649 3.742 -43.880 1.00 19.31 O
ATOM 11 C2' G B 11 -5.607 2.367 -43.957 1.00 17.63 C
ATOM 12 O2' G B 11 -6.097 3.435 -43.157 1.00 16.52 O
ATOM 13 C1' G B 11 -6.094 2.528 -45.390 1.00 17.37 C
ATOM 14 N9 G B 11 -7.405 1.962 -45.668 1.00 17.47 N
ATOM 15 C8 G B 11 -7.748 0.630 -45.657 1.00 18.39 C
ATOM 16 N7 G B 11 -8.995 0.408 -45.958 1.00 19.18 N
ATOM 17 C5 G B 11 -9.515 1.671 -46.183 1.00 18.29 C
ATOM 18 C6 G B 11 -10.826 2.057 -46.543 1.00 19.61 C
ATOM 19 O6 G B 11 -11.806 1.328 -46.737 1.00 19.43 O
ATOM 20 N1 G B 11 -10.944 3.439 -46.681 1.00 18.59 N
ATOM 21 C2 G B 11 -9.915 4.336 -46.489 1.00 17.77 C
ATOM 22 N2 G B 11 -10.216 5.631 -46.663 1.00 17.53 N
ATOM 23 N3 G B 11 -8.677 3.985 -46.149 1.00 17.21 N
ATOM 24 C4 G B 11 -8.547 2.643 -46.016 1.00 17.47 C
ATOM 25 P G B 12 -2.333 4.054 -43.039 1.00 19.39 P
ATOM 26 OP1 G B 12 -1.207 3.303 -43.649 1.00 20.36 O
ATOM 27 OP2 G B 12 -2.636 3.911 -41.600 1.00 19.47 O
ATOM 28 O5' G B 12 -2.204 5.622 -43.339 1.00 17.73 O
TER
Atoms:
C2: (-1.845,-4.635,-51.516)
OP1: (-7.783,-3.350,-46.645)
OP2: (-5.441,-3.304,-45.589)
C4: (-1.389,-2.394,-51.010)
O5': (-5.750,-4.330,-47.798)
C3': (-3.961,-6.743,-48.448)
C1': (-3.905,-5.792,-50.606)
O4': (-5.126,-5.450,-49.971)
C5': (-6.168,-5.662,-47.799)
P: (-6.312,-3.238,-46.784)
O2: (-1.553,-5.692,-52.088)
C4': (-5.363,-6.363,-48.869)
C2': (-3.303,-6.950,-49.806)
O2': (-3.645,-8.188,-50.411)
N1: (-3.011,-4.566,-50.735)
N3: (-1.057,-3.535,-51.626)
N4: (-0.574,-1.342,-51.167)
C6: (-3.345,-3.388,-50.106)
C5: (-2.573,-2.291,-50.213)
O3': (-3.990,-7.925,-47.649)
OP1: (-7.783,-3.350,-46.645)
OP2: (-5.441,-3.304,-45.589)
C4: (-1.389,-2.394,-51.010)
O5': (-5.750,-4.330,-47.798)
C3': (-3.961,-6.743,-48.448)
C1': (-3.905,-5.792,-50.606)
O4': (-5.126,-5.450,-49.971)
C5': (-6.168,-5.662,-47.799)
P: (-6.312,-3.238,-46.784)
O2: (-1.553,-5.692,-52.088)
C4': (-5.363,-6.363,-48.869)
C2': (-3.303,-6.950,-49.806)
O2': (-3.645,-8.188,-50.411)
N1: (-3.011,-4.566,-50.735)
N3: (-1.057,-3.535,-51.626)
N4: (-0.574,-1.342,-51.167)
C6: (-3.345,-3.388,-50.106)
C5: (-2.573,-2.291,-50.213)
O3': (-3.990,-7.925,-47.649)
OP1: (-0.400,-0.080,-47.266)
OP2: (-1.341,0.816,-49.445)
C3': (-4.087,2.434,-44.134)
C1': (-6.094,2.528,-45.390)
C5': (-2.867,1.054,-45.952)
O6: (-11.806,1.328,-46.737)
O4': (-5.144,1.842,-46.170)
C8: (-7.748,0.630,-45.657)
C2: (-9.915,4.336,-46.489)
C6: (-10.826,2.057,-46.543)
C5: (-9.515,1.671,-46.183)
C4: (-8.547,2.643,-46.016)
P: (-1.186,0.951,-47.982)
C4': (-3.850,2.155,-45.614)
C2': (-5.607,2.367,-43.957)
O2': (-6.097,3.435,-43.157)
N1: (-10.944,3.439,-46.681)
N2: (-10.216,5.631,-46.663)
N3: (-8.677,3.985,-46.149)
N7: (-8.995,0.408,-45.958)
N9: (-7.405,1.962,-45.668)
O5': (-2.655,1.050,-47.358)
O3': (-3.649,3.742,-43.880)
OP2: (-1.341,0.816,-49.445)
C3': (-4.087,2.434,-44.134)
C1': (-6.094,2.528,-45.390)
C5': (-2.867,1.054,-45.952)
O6: (-11.806,1.328,-46.737)
O4': (-5.144,1.842,-46.170)
C8: (-7.748,0.630,-45.657)
C2: (-9.915,4.336,-46.489)
C6: (-10.826,2.057,-46.543)
C5: (-9.515,1.671,-46.183)
C4: (-8.547,2.643,-46.016)
P: (-1.186,0.951,-47.982)
C4': (-3.850,2.155,-45.614)
C2': (-5.607,2.367,-43.957)
O2': (-6.097,3.435,-43.157)
N1: (-10.944,3.439,-46.681)
N2: (-10.216,5.631,-46.663)
N3: (-8.677,3.985,-46.149)
N7: (-8.995,0.408,-45.958)
N9: (-7.405,1.962,-45.668)
O5': (-2.655,1.050,-47.358)
O3': (-3.649,3.742,-43.880)
Image (generated by PyMOL):