Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKZ:B39:B11
Extra
PDB:
ATOM 1 O3' C A 38 6.427 -3.579 1.343 1.00 65.42 O
ATOM 2 P C A 39 7.375 -4.455 0.384 1.00 72.42 P
ATOM 3 OP1 C A 39 8.777 -4.159 0.761 1.00 71.98 O
ATOM 4 OP2 C A 39 6.944 -4.192 -1.003 1.00 69.94 O
ATOM 5 O5' C A 39 7.019 -5.948 0.795 1.00 76.50 O
ATOM 6 C5' C A 39 5.683 -6.421 0.765 1.00 70.35 C
ATOM 7 C4' C A 39 5.452 -7.451 1.837 1.00 66.95 C
ATOM 8 O4' C A 39 5.435 -6.799 3.135 1.00 61.88 O
ATOM 9 C3' C A 39 4.129 -8.197 1.772 1.00 64.84 C
ATOM 10 O3' C A 39 4.152 -9.295 0.872 1.00 64.71 O
ATOM 11 C2' C A 39 3.909 -8.594 3.222 1.00 60.67 C
ATOM 12 O2' C A 39 4.756 -9.683 3.577 1.00 52.57 O
ATOM 13 C1' C A 39 4.417 -7.346 3.933 1.00 64.56 C
ATOM 14 N1 C A 39 3.364 -6.321 4.084 1.00 70.73 N
ATOM 15 C2 C A 39 2.192 -6.593 4.797 1.00 78.67 C
ATOM 16 O2 C A 39 2.048 -7.724 5.278 1.00 87.04 O
ATOM 17 N3 C A 39 1.245 -5.630 4.940 1.00 72.54 N
ATOM 18 C4 C A 39 1.442 -4.431 4.405 1.00 71.10 C
ATOM 19 N4 C A 39 0.491 -3.516 4.561 1.00 37.80 N
ATOM 20 C5 C A 39 2.629 -4.121 3.683 1.00 69.80 C
ATOM 21 C6 C A 39 3.556 -5.081 3.553 1.00 67.98 C
ATOM 22 P U A 40 2.786 -9.823 0.200 1.00 75.69 P
ATOM 23 OP1 U A 40 3.136 -11.001 -0.629 1.00 75.25 O
ATOM 24 OP2 U A 40 2.140 -8.664 -0.451 1.00 63.23 O
ATOM 25 O5' U A 40 1.919 -10.286 1.458 1.00 92.41 O
TER
ATOM 1 O3' A B 10 0.683 0.437 0.564 1.00 62.81 O
ATOM 2 P G B 11 1.112 -0.889 1.366 1.00 53.66 P
ATOM 3 OP1 G B 11 0.236 -1.982 0.908 1.00 49.85 O
ATOM 4 OP2 G B 11 1.122 -0.545 2.810 1.00 57.88 O
ATOM 5 O5' G B 11 2.610 -1.142 0.861 1.00 65.68 O
ATOM 6 C5' G B 11 2.980 -0.970 -0.505 1.00 50.94 C
ATOM 7 C4' G B 11 3.695 0.343 -0.741 1.00 44.64 C
ATOM 8 O4' G B 11 4.997 0.327 -0.083 1.00 32.48 O
ATOM 9 C3' G B 11 3.966 0.679 -2.213 1.00 44.65 C
ATOM 10 O3' G B 11 3.597 2.024 -2.486 1.00 47.97 O
ATOM 11 C2' G B 11 5.478 0.522 -2.350 1.00 41.91 C
ATOM 12 O2' G B 11 6.073 1.347 -3.332 1.00 54.86 O
ATOM 13 C1' G B 11 5.962 0.871 -0.954 1.00 32.66 C
ATOM 14 N9 G B 11 7.267 0.298 -0.635 1.00 28.87 N
ATOM 15 C8 G B 11 7.615 -1.025 -0.762 1.00 33.68 C
ATOM 16 N7 G B 11 8.865 -1.260 -0.471 1.00 33.81 N
ATOM 17 C5 G B 11 9.371 -0.014 -0.126 1.00 39.01 C
ATOM 18 C6 G B 11 10.679 0.350 0.318 1.00 44.16 C
ATOM 19 O6 G B 11 11.652 -0.381 0.483 1.00 42.88 O
ATOM 20 N1 G B 11 10.811 1.715 0.561 1.00 45.49 N
ATOM 21 C2 G B 11 9.780 2.618 0.397 1.00 52.38 C
ATOM 22 N2 G B 11 10.121 3.891 0.675 1.00 52.35 N
ATOM 23 N3 G B 11 8.539 2.296 -0.016 1.00 45.54 N
ATOM 24 C4 G B 11 8.403 0.967 -0.252 1.00 39.70 C
ATOM 25 P G B 12 2.570 2.328 -3.680 1.00 62.58 P
ATOM 26 OP1 G B 12 1.839 1.064 -3.965 1.00 59.43 O
ATOM 27 OP2 G B 12 3.346 2.963 -4.766 1.00 67.35 O
ATOM 28 O5' G B 12 1.585 3.379 -3.045 1.00 38.32 O
TER
ATOM 2 P C A 39 7.375 -4.455 0.384 1.00 72.42 P
ATOM 3 OP1 C A 39 8.777 -4.159 0.761 1.00 71.98 O
ATOM 4 OP2 C A 39 6.944 -4.192 -1.003 1.00 69.94 O
ATOM 5 O5' C A 39 7.019 -5.948 0.795 1.00 76.50 O
ATOM 6 C5' C A 39 5.683 -6.421 0.765 1.00 70.35 C
ATOM 7 C4' C A 39 5.452 -7.451 1.837 1.00 66.95 C
ATOM 8 O4' C A 39 5.435 -6.799 3.135 1.00 61.88 O
ATOM 9 C3' C A 39 4.129 -8.197 1.772 1.00 64.84 C
ATOM 10 O3' C A 39 4.152 -9.295 0.872 1.00 64.71 O
ATOM 11 C2' C A 39 3.909 -8.594 3.222 1.00 60.67 C
ATOM 12 O2' C A 39 4.756 -9.683 3.577 1.00 52.57 O
ATOM 13 C1' C A 39 4.417 -7.346 3.933 1.00 64.56 C
ATOM 14 N1 C A 39 3.364 -6.321 4.084 1.00 70.73 N
ATOM 15 C2 C A 39 2.192 -6.593 4.797 1.00 78.67 C
ATOM 16 O2 C A 39 2.048 -7.724 5.278 1.00 87.04 O
ATOM 17 N3 C A 39 1.245 -5.630 4.940 1.00 72.54 N
ATOM 18 C4 C A 39 1.442 -4.431 4.405 1.00 71.10 C
ATOM 19 N4 C A 39 0.491 -3.516 4.561 1.00 37.80 N
ATOM 20 C5 C A 39 2.629 -4.121 3.683 1.00 69.80 C
ATOM 21 C6 C A 39 3.556 -5.081 3.553 1.00 67.98 C
ATOM 22 P U A 40 2.786 -9.823 0.200 1.00 75.69 P
ATOM 23 OP1 U A 40 3.136 -11.001 -0.629 1.00 75.25 O
ATOM 24 OP2 U A 40 2.140 -8.664 -0.451 1.00 63.23 O
ATOM 25 O5' U A 40 1.919 -10.286 1.458 1.00 92.41 O
TER
ATOM 1 O3' A B 10 0.683 0.437 0.564 1.00 62.81 O
ATOM 2 P G B 11 1.112 -0.889 1.366 1.00 53.66 P
ATOM 3 OP1 G B 11 0.236 -1.982 0.908 1.00 49.85 O
ATOM 4 OP2 G B 11 1.122 -0.545 2.810 1.00 57.88 O
ATOM 5 O5' G B 11 2.610 -1.142 0.861 1.00 65.68 O
ATOM 6 C5' G B 11 2.980 -0.970 -0.505 1.00 50.94 C
ATOM 7 C4' G B 11 3.695 0.343 -0.741 1.00 44.64 C
ATOM 8 O4' G B 11 4.997 0.327 -0.083 1.00 32.48 O
ATOM 9 C3' G B 11 3.966 0.679 -2.213 1.00 44.65 C
ATOM 10 O3' G B 11 3.597 2.024 -2.486 1.00 47.97 O
ATOM 11 C2' G B 11 5.478 0.522 -2.350 1.00 41.91 C
ATOM 12 O2' G B 11 6.073 1.347 -3.332 1.00 54.86 O
ATOM 13 C1' G B 11 5.962 0.871 -0.954 1.00 32.66 C
ATOM 14 N9 G B 11 7.267 0.298 -0.635 1.00 28.87 N
ATOM 15 C8 G B 11 7.615 -1.025 -0.762 1.00 33.68 C
ATOM 16 N7 G B 11 8.865 -1.260 -0.471 1.00 33.81 N
ATOM 17 C5 G B 11 9.371 -0.014 -0.126 1.00 39.01 C
ATOM 18 C6 G B 11 10.679 0.350 0.318 1.00 44.16 C
ATOM 19 O6 G B 11 11.652 -0.381 0.483 1.00 42.88 O
ATOM 20 N1 G B 11 10.811 1.715 0.561 1.00 45.49 N
ATOM 21 C2 G B 11 9.780 2.618 0.397 1.00 52.38 C
ATOM 22 N2 G B 11 10.121 3.891 0.675 1.00 52.35 N
ATOM 23 N3 G B 11 8.539 2.296 -0.016 1.00 45.54 N
ATOM 24 C4 G B 11 8.403 0.967 -0.252 1.00 39.70 C
ATOM 25 P G B 12 2.570 2.328 -3.680 1.00 62.58 P
ATOM 26 OP1 G B 12 1.839 1.064 -3.965 1.00 59.43 O
ATOM 27 OP2 G B 12 3.346 2.963 -4.766 1.00 67.35 O
ATOM 28 O5' G B 12 1.585 3.379 -3.045 1.00 38.32 O
TER
Atoms:
C2: (2.192,-6.593,4.797)
OP1: (8.777,-4.159,0.761)
OP2: (6.944,-4.192,-1.003)
C4: (1.442,-4.431,4.405)
O5': (7.019,-5.948,0.795)
C3': (4.129,-8.197,1.772)
C1': (4.417,-7.346,3.933)
O4': (5.435,-6.799,3.135)
C5': (5.683,-6.421,0.765)
P: (7.375,-4.455,0.384)
O2: (2.048,-7.724,5.278)
C4': (5.452,-7.451,1.837)
C2': (3.909,-8.594,3.222)
O2': (4.756,-9.683,3.577)
N1: (3.364,-6.321,4.084)
N3: (1.245,-5.630,4.940)
N4: (0.491,-3.516,4.561)
C6: (3.556,-5.081,3.553)
C5: (2.629,-4.121,3.683)
O3': (4.152,-9.295,0.872)
OP1: (8.777,-4.159,0.761)
OP2: (6.944,-4.192,-1.003)
C4: (1.442,-4.431,4.405)
O5': (7.019,-5.948,0.795)
C3': (4.129,-8.197,1.772)
C1': (4.417,-7.346,3.933)
O4': (5.435,-6.799,3.135)
C5': (5.683,-6.421,0.765)
P: (7.375,-4.455,0.384)
O2: (2.048,-7.724,5.278)
C4': (5.452,-7.451,1.837)
C2': (3.909,-8.594,3.222)
O2': (4.756,-9.683,3.577)
N1: (3.364,-6.321,4.084)
N3: (1.245,-5.630,4.940)
N4: (0.491,-3.516,4.561)
C6: (3.556,-5.081,3.553)
C5: (2.629,-4.121,3.683)
O3': (4.152,-9.295,0.872)
OP1: (0.236,-1.982,0.908)
OP2: (1.122,-0.545,2.810)
C3': (3.966,0.679,-2.213)
C1': (5.962,0.871,-0.954)
C5': (2.980,-0.970,-0.505)
O6: (11.652,-0.381,0.483)
O4': (4.997,0.327,-0.083)
C8: (7.615,-1.025,-0.762)
C2: (9.780,2.618,0.397)
C6: (10.679,0.350,0.318)
C5: (9.371,-0.014,-0.126)
C4: (8.403,0.967,-0.252)
P: (1.112,-0.889,1.366)
C4': (3.695,0.343,-0.741)
C2': (5.478,0.522,-2.350)
O2': (6.073,1.347,-3.332)
N1: (10.811,1.715,0.561)
N2: (10.121,3.891,0.675)
N3: (8.539,2.296,-0.016)
N7: (8.865,-1.260,-0.471)
N9: (7.267,0.298,-0.635)
O5': (2.610,-1.142,0.861)
O3': (3.597,2.024,-2.486)
OP2: (1.122,-0.545,2.810)
C3': (3.966,0.679,-2.213)
C1': (5.962,0.871,-0.954)
C5': (2.980,-0.970,-0.505)
O6: (11.652,-0.381,0.483)
O4': (4.997,0.327,-0.083)
C8: (7.615,-1.025,-0.762)
C2: (9.780,2.618,0.397)
C6: (10.679,0.350,0.318)
C5: (9.371,-0.014,-0.126)
C4: (8.403,0.967,-0.252)
P: (1.112,-0.889,1.366)
C4': (3.695,0.343,-0.741)
C2': (5.478,0.522,-2.350)
O2': (6.073,1.347,-3.332)
N1: (10.811,1.715,0.561)
N2: (10.121,3.891,0.675)
N3: (8.539,2.296,-0.016)
N7: (8.865,-1.260,-0.471)
N9: (7.267,0.298,-0.635)
O5': (2.610,-1.142,0.861)
O3': (3.597,2.024,-2.486)
Image (generated by PyMOL):