Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12115:12090
Extra
PDB:
ATOM 1 O3' G A2114 -10.291 -4.878 69.421 1.00 52.71 O
ATOM 2 P C A2115 -8.965 -4.756 68.518 1.00 56.84 P
ATOM 3 OP1 C A2115 -7.953 -4.099 69.322 1.00 56.62 O
ATOM 4 OP2 C A2115 -9.337 -4.150 67.228 1.00 56.98 O
ATOM 5 O5' C A2115 -8.572 -6.251 68.299 1.00 56.69 O
ATOM 6 C5' C A2115 -9.018 -6.934 67.152 1.00 56.80 C
ATOM 7 C4' C A2115 -7.891 -7.656 66.504 1.00 56.54 C
ATOM 8 O4' C A2115 -6.917 -6.708 66.006 1.00 56.36 O
ATOM 9 C3' C A2115 -7.099 -8.537 67.421 1.00 56.31 C
ATOM 10 O3' C A2115 -7.755 -9.768 67.657 1.00 56.44 O
ATOM 11 C2' C A2115 -5.792 -8.669 66.672 1.00 56.04 C
ATOM 12 O2' C A2115 -5.933 -9.598 65.622 1.00 56.09 O
ATOM 13 C1' C A2115 -5.645 -7.276 66.056 1.00 56.06 C
ATOM 14 N1 C A2115 -4.793 -6.415 66.859 1.00 55.87 N
ATOM 15 C2 C A2115 -3.429 -6.429 66.609 1.00 55.59 C
ATOM 16 O2 C A2115 -3.074 -7.170 65.701 1.00 55.52 O
ATOM 17 N3 C A2115 -2.560 -5.683 67.319 1.00 55.41 N
ATOM 18 C4 C A2115 -3.050 -4.932 68.288 1.00 55.53 C
ATOM 19 N4 C A2115 -2.226 -4.193 69.011 1.00 55.38 N
ATOM 20 C5 C A2115 -4.438 -4.896 68.575 1.00 55.82 C
ATOM 21 C6 C A2115 -5.293 -5.648 67.846 1.00 55.98 C
ATOM 22 P A A2116 -7.691 -10.460 69.108 1.00 60.60 P
ATOM 23 OP1 A A2116 -6.292 -10.959 69.284 1.00 60.29 O
ATOM 24 OP2 A A2116 -8.835 -11.412 69.185 1.00 60.86 O
ATOM 25 O5' A A2116 -7.930 -9.248 70.104 1.00 60.66 O
TER
ATOM 1 O3' U B2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 2 P G B2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 3 OP1 G B2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 4 OP2 G B2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 5 O5' G B2090 -3.850 -0.424 70.464 1.00 44.35 O
ATOM 6 C5' G B2090 -4.944 -1.261 70.173 1.00 44.53 C
ATOM 7 C4' G B2090 -5.204 -1.282 68.700 1.00 44.60 C
ATOM 8 O4' G B2090 -6.602 -1.560 68.448 1.00 44.89 O
ATOM 9 C3' G B2090 -4.896 0.006 67.949 1.00 44.63 C
ATOM 10 O3' G B2090 -4.520 -0.367 66.648 1.00 44.55 O
ATOM 11 C2' G B2090 -6.270 0.644 67.844 1.00 44.98 C
ATOM 12 O2' G B2090 -6.385 1.583 66.802 1.00 45.10 O
ATOM 13 C1' G B2090 -7.098 -0.590 67.559 1.00 45.08 C
ATOM 14 N9 G B2090 -8.536 -0.456 67.782 1.00 45.42 N
ATOM 15 C8 G B2090 -9.240 -0.175 68.925 1.00 45.59 C
ATOM 16 N7 G B2090 -10.527 -0.205 68.781 1.00 45.90 N
ATOM 17 C5 G B2090 -10.674 -0.560 67.457 1.00 45.93 C
ATOM 18 C6 G B2090 -11.853 -0.738 66.716 1.00 46.23 C
ATOM 19 O6 G B2090 -12.982 -0.593 67.186 1.00 46.52 O
ATOM 20 N1 G B2090 -11.558 -1.099 65.397 1.00 46.18 N
ATOM 21 C2 G B2090 -10.276 -1.240 64.916 1.00 45.87 C
ATOM 22 N2 G B2090 -10.067 -1.561 63.655 1.00 45.86 N
ATOM 23 N3 G B2090 -9.187 -1.066 65.590 1.00 45.59 N
ATOM 24 C4 G B2090 -9.466 -0.732 66.845 1.00 45.65 C
ATOM 25 P C B2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 26 OP1 C B2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 27 OP2 C B2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 28 O5' C B2091 -2.542 -0.998 65.396 1.00 50.06 O
TER
ATOM 2 P C A2115 -8.965 -4.756 68.518 1.00 56.84 P
ATOM 3 OP1 C A2115 -7.953 -4.099 69.322 1.00 56.62 O
ATOM 4 OP2 C A2115 -9.337 -4.150 67.228 1.00 56.98 O
ATOM 5 O5' C A2115 -8.572 -6.251 68.299 1.00 56.69 O
ATOM 6 C5' C A2115 -9.018 -6.934 67.152 1.00 56.80 C
ATOM 7 C4' C A2115 -7.891 -7.656 66.504 1.00 56.54 C
ATOM 8 O4' C A2115 -6.917 -6.708 66.006 1.00 56.36 O
ATOM 9 C3' C A2115 -7.099 -8.537 67.421 1.00 56.31 C
ATOM 10 O3' C A2115 -7.755 -9.768 67.657 1.00 56.44 O
ATOM 11 C2' C A2115 -5.792 -8.669 66.672 1.00 56.04 C
ATOM 12 O2' C A2115 -5.933 -9.598 65.622 1.00 56.09 O
ATOM 13 C1' C A2115 -5.645 -7.276 66.056 1.00 56.06 C
ATOM 14 N1 C A2115 -4.793 -6.415 66.859 1.00 55.87 N
ATOM 15 C2 C A2115 -3.429 -6.429 66.609 1.00 55.59 C
ATOM 16 O2 C A2115 -3.074 -7.170 65.701 1.00 55.52 O
ATOM 17 N3 C A2115 -2.560 -5.683 67.319 1.00 55.41 N
ATOM 18 C4 C A2115 -3.050 -4.932 68.288 1.00 55.53 C
ATOM 19 N4 C A2115 -2.226 -4.193 69.011 1.00 55.38 N
ATOM 20 C5 C A2115 -4.438 -4.896 68.575 1.00 55.82 C
ATOM 21 C6 C A2115 -5.293 -5.648 67.846 1.00 55.98 C
ATOM 22 P A A2116 -7.691 -10.460 69.108 1.00 60.60 P
ATOM 23 OP1 A A2116 -6.292 -10.959 69.284 1.00 60.29 O
ATOM 24 OP2 A A2116 -8.835 -11.412 69.185 1.00 60.86 O
ATOM 25 O5' A A2116 -7.930 -9.248 70.104 1.00 60.66 O
TER
ATOM 1 O3' U B2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 2 P G B2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 3 OP1 G B2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 4 OP2 G B2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 5 O5' G B2090 -3.850 -0.424 70.464 1.00 44.35 O
ATOM 6 C5' G B2090 -4.944 -1.261 70.173 1.00 44.53 C
ATOM 7 C4' G B2090 -5.204 -1.282 68.700 1.00 44.60 C
ATOM 8 O4' G B2090 -6.602 -1.560 68.448 1.00 44.89 O
ATOM 9 C3' G B2090 -4.896 0.006 67.949 1.00 44.63 C
ATOM 10 O3' G B2090 -4.520 -0.367 66.648 1.00 44.55 O
ATOM 11 C2' G B2090 -6.270 0.644 67.844 1.00 44.98 C
ATOM 12 O2' G B2090 -6.385 1.583 66.802 1.00 45.10 O
ATOM 13 C1' G B2090 -7.098 -0.590 67.559 1.00 45.08 C
ATOM 14 N9 G B2090 -8.536 -0.456 67.782 1.00 45.42 N
ATOM 15 C8 G B2090 -9.240 -0.175 68.925 1.00 45.59 C
ATOM 16 N7 G B2090 -10.527 -0.205 68.781 1.00 45.90 N
ATOM 17 C5 G B2090 -10.674 -0.560 67.457 1.00 45.93 C
ATOM 18 C6 G B2090 -11.853 -0.738 66.716 1.00 46.23 C
ATOM 19 O6 G B2090 -12.982 -0.593 67.186 1.00 46.52 O
ATOM 20 N1 G B2090 -11.558 -1.099 65.397 1.00 46.18 N
ATOM 21 C2 G B2090 -10.276 -1.240 64.916 1.00 45.87 C
ATOM 22 N2 G B2090 -10.067 -1.561 63.655 1.00 45.86 N
ATOM 23 N3 G B2090 -9.187 -1.066 65.590 1.00 45.59 N
ATOM 24 C4 G B2090 -9.466 -0.732 66.845 1.00 45.65 C
ATOM 25 P C B2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 26 OP1 C B2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 27 OP2 C B2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 28 O5' C B2091 -2.542 -0.998 65.396 1.00 50.06 O
TER
Atoms:
C2: (-3.429,-6.429,66.609)
OP1: (-7.953,-4.099,69.322)
OP2: (-9.337,-4.150,67.228)
C4: (-3.050,-4.932,68.288)
O5': (-8.572,-6.251,68.299)
C3': (-7.099,-8.537,67.421)
C1': (-5.645,-7.276,66.056)
O4': (-6.917,-6.708,66.006)
C5': (-9.018,-6.934,67.152)
P: (-8.965,-4.756,68.518)
O2: (-3.074,-7.170,65.701)
C4': (-7.891,-7.656,66.504)
C2': (-5.792,-8.669,66.672)
O2': (-5.933,-9.598,65.622)
N1: (-4.793,-6.415,66.859)
N3: (-2.560,-5.683,67.319)
N4: (-2.226,-4.193,69.011)
C6: (-5.293,-5.648,67.846)
C5: (-4.438,-4.896,68.575)
O3': (-7.755,-9.768,67.657)
OP1: (-7.953,-4.099,69.322)
OP2: (-9.337,-4.150,67.228)
C4: (-3.050,-4.932,68.288)
O5': (-8.572,-6.251,68.299)
C3': (-7.099,-8.537,67.421)
C1': (-5.645,-7.276,66.056)
O4': (-6.917,-6.708,66.006)
C5': (-9.018,-6.934,67.152)
P: (-8.965,-4.756,68.518)
O2: (-3.074,-7.170,65.701)
C4': (-7.891,-7.656,66.504)
C2': (-5.792,-8.669,66.672)
O2': (-5.933,-9.598,65.622)
N1: (-4.793,-6.415,66.859)
N3: (-2.560,-5.683,67.319)
N4: (-2.226,-4.193,69.011)
C6: (-5.293,-5.648,67.846)
C5: (-4.438,-4.896,68.575)
O3': (-7.755,-9.768,67.657)
OP1: (-2.477,-2.294,71.273)
OP2: (-1.545,0.027,71.227)
C3': (-4.896,0.006,67.949)
C1': (-7.098,-0.590,67.559)
C5': (-4.944,-1.261,70.173)
O6: (-12.982,-0.593,67.186)
O4': (-6.602,-1.560,68.448)
C8: (-9.240,-0.175,68.925)
C2: (-10.276,-1.240,64.916)
C6: (-11.853,-0.738,66.716)
C5: (-10.674,-0.560,67.457)
C4: (-9.466,-0.732,66.845)
P: (-2.691,-0.875,71.415)
C4': (-5.204,-1.282,68.700)
C2': (-6.270,0.644,67.844)
O2': (-6.385,1.583,66.802)
N1: (-11.558,-1.099,65.397)
N2: (-10.067,-1.561,63.655)
N3: (-9.187,-1.066,65.590)
N7: (-10.527,-0.205,68.781)
N9: (-8.536,-0.456,67.782)
O5': (-3.850,-0.424,70.464)
O3': (-4.520,-0.367,66.648)
OP2: (-1.545,0.027,71.227)
C3': (-4.896,0.006,67.949)
C1': (-7.098,-0.590,67.559)
C5': (-4.944,-1.261,70.173)
O6: (-12.982,-0.593,67.186)
O4': (-6.602,-1.560,68.448)
C8: (-9.240,-0.175,68.925)
C2: (-10.276,-1.240,64.916)
C6: (-11.853,-0.738,66.716)
C5: (-10.674,-0.560,67.457)
C4: (-9.466,-0.732,66.845)
P: (-2.691,-0.875,71.415)
C4': (-5.204,-1.282,68.700)
C2': (-6.270,0.644,67.844)
O2': (-6.385,1.583,66.802)
N1: (-11.558,-1.099,65.397)
N2: (-10.067,-1.561,63.655)
N3: (-9.187,-1.066,65.590)
N7: (-10.527,-0.205,68.781)
N9: (-8.536,-0.456,67.782)
O5': (-3.850,-0.424,70.464)
O3': (-4.520,-0.367,66.648)
Image (generated by PyMOL):