Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12872:12861
Extra
PDB:
ATOM 1 O3' U A2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 2 P C A2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C A2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C A2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C A2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C A2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C A2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C A2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C A2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C A2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C A2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C A2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C A2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C A2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C A2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C A2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C A2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C A2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C A2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C A2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C A2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U A2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U A2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U A2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U A2873 21.791 17.661 0.532 1.00 51.50 O
TER
ATOM 1 O3' G B2860 11.799 24.679 4.527 1.00 57.12 O
ATOM 2 P G B2861 12.198 24.208 3.061 1.00 52.15 P
ATOM 3 OP1 G B2861 10.968 23.898 2.334 1.00 52.64 O
ATOM 4 OP2 G B2861 13.147 23.159 3.216 1.00 51.70 O
ATOM 5 O5' G B2861 12.884 25.513 2.461 1.00 52.52 O
ATOM 6 C5' G B2861 13.955 25.437 1.536 1.00 52.68 C
ATOM 7 C4' G B2861 14.677 26.765 1.422 1.00 52.87 C
ATOM 8 O4' G B2861 15.514 26.995 2.588 1.00 52.28 O
ATOM 9 C3' G B2861 15.637 26.906 0.260 1.00 53.20 C
ATOM 10 O3' G B2861 14.993 27.207 -0.945 1.00 53.90 O
ATOM 11 C2' G B2861 16.586 28.006 0.724 1.00 53.07 C
ATOM 12 O2' G B2861 16.011 29.297 0.552 1.00 53.53 O
ATOM 13 C1' G B2861 16.681 27.714 2.211 1.00 52.38 C
ATOM 14 N9 G B2861 17.860 26.896 2.489 1.00 51.89 N
ATOM 15 C8 G B2861 17.925 25.649 3.038 1.00 51.40 C
ATOM 16 N7 G B2861 19.154 25.221 3.102 1.00 51.08 N
ATOM 17 C5 G B2861 19.934 26.229 2.556 1.00 51.37 C
ATOM 18 C6 G B2861 21.344 26.316 2.358 1.00 51.24 C
ATOM 19 O6 G B2861 22.165 25.448 2.675 1.00 50.81 O
ATOM 20 N1 G B2861 21.749 27.512 1.739 1.00 51.68 N
ATOM 21 C2 G B2861 20.869 28.497 1.398 1.00 52.17 C
ATOM 22 N2 G B2861 21.381 29.567 0.839 1.00 52.56 N
ATOM 23 N3 G B2861 19.546 28.441 1.568 1.00 52.31 N
ATOM 24 C4 G B2861 19.139 27.277 2.144 1.00 51.89 C
ATOM 25 P C B2862 15.409 26.426 -2.264 1.00 53.33 P
ATOM 26 OP1 C B2862 14.294 26.615 -3.266 1.00 54.02 O
ATOM 27 OP2 C B2862 15.759 25.042 -1.833 1.00 52.80 O
ATOM 28 O5' C B2862 16.707 27.213 -2.742 1.00 53.46 O
TER
ATOM 2 P C A2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C A2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C A2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C A2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C A2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C A2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C A2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C A2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C A2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C A2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C A2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C A2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C A2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C A2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C A2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C A2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C A2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C A2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C A2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C A2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U A2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U A2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U A2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U A2873 21.791 17.661 0.532 1.00 51.50 O
TER
ATOM 1 O3' G B2860 11.799 24.679 4.527 1.00 57.12 O
ATOM 2 P G B2861 12.198 24.208 3.061 1.00 52.15 P
ATOM 3 OP1 G B2861 10.968 23.898 2.334 1.00 52.64 O
ATOM 4 OP2 G B2861 13.147 23.159 3.216 1.00 51.70 O
ATOM 5 O5' G B2861 12.884 25.513 2.461 1.00 52.52 O
ATOM 6 C5' G B2861 13.955 25.437 1.536 1.00 52.68 C
ATOM 7 C4' G B2861 14.677 26.765 1.422 1.00 52.87 C
ATOM 8 O4' G B2861 15.514 26.995 2.588 1.00 52.28 O
ATOM 9 C3' G B2861 15.637 26.906 0.260 1.00 53.20 C
ATOM 10 O3' G B2861 14.993 27.207 -0.945 1.00 53.90 O
ATOM 11 C2' G B2861 16.586 28.006 0.724 1.00 53.07 C
ATOM 12 O2' G B2861 16.011 29.297 0.552 1.00 53.53 O
ATOM 13 C1' G B2861 16.681 27.714 2.211 1.00 52.38 C
ATOM 14 N9 G B2861 17.860 26.896 2.489 1.00 51.89 N
ATOM 15 C8 G B2861 17.925 25.649 3.038 1.00 51.40 C
ATOM 16 N7 G B2861 19.154 25.221 3.102 1.00 51.08 N
ATOM 17 C5 G B2861 19.934 26.229 2.556 1.00 51.37 C
ATOM 18 C6 G B2861 21.344 26.316 2.358 1.00 51.24 C
ATOM 19 O6 G B2861 22.165 25.448 2.675 1.00 50.81 O
ATOM 20 N1 G B2861 21.749 27.512 1.739 1.00 51.68 N
ATOM 21 C2 G B2861 20.869 28.497 1.398 1.00 52.17 C
ATOM 22 N2 G B2861 21.381 29.567 0.839 1.00 52.56 N
ATOM 23 N3 G B2861 19.546 28.441 1.568 1.00 52.31 N
ATOM 24 C4 G B2861 19.139 27.277 2.144 1.00 51.89 C
ATOM 25 P C B2862 15.409 26.426 -2.264 1.00 53.33 P
ATOM 26 OP1 C B2862 14.294 26.615 -3.266 1.00 54.02 O
ATOM 27 OP2 C B2862 15.759 25.042 -1.833 1.00 52.80 O
ATOM 28 O5' C B2862 16.707 27.213 -2.742 1.00 53.46 O
TER
Atoms:
C2: (18.584,21.997,3.621)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
OP1: (10.968,23.898,2.334)
OP2: (13.147,23.159,3.216)
C3': (15.637,26.906,0.260)
C1': (16.681,27.714,2.211)
C5': (13.955,25.437,1.536)
O6: (22.165,25.448,2.675)
O4': (15.514,26.995,2.588)
C8: (17.925,25.649,3.038)
C2: (20.869,28.497,1.398)
C6: (21.344,26.316,2.358)
C5: (19.934,26.229,2.556)
C4: (19.139,27.277,2.144)
P: (12.198,24.208,3.061)
C4': (14.677,26.765,1.422)
C2': (16.586,28.006,0.724)
O2': (16.011,29.297,0.552)
N1: (21.749,27.512,1.739)
N2: (21.381,29.567,0.839)
N3: (19.546,28.441,1.568)
N7: (19.154,25.221,3.102)
N9: (17.860,26.896,2.489)
O5': (12.884,25.513,2.461)
O3': (14.993,27.207,-0.945)
OP2: (13.147,23.159,3.216)
C3': (15.637,26.906,0.260)
C1': (16.681,27.714,2.211)
C5': (13.955,25.437,1.536)
O6: (22.165,25.448,2.675)
O4': (15.514,26.995,2.588)
C8: (17.925,25.649,3.038)
C2: (20.869,28.497,1.398)
C6: (21.344,26.316,2.358)
C5: (19.934,26.229,2.556)
C4: (19.139,27.277,2.144)
P: (12.198,24.208,3.061)
C4': (14.677,26.765,1.422)
C2': (16.586,28.006,0.724)
O2': (16.011,29.297,0.552)
N1: (21.749,27.512,1.739)
N2: (21.381,29.567,0.839)
N3: (19.546,28.441,1.568)
N7: (19.154,25.221,3.102)
N9: (17.860,26.896,2.489)
O5': (12.884,25.513,2.461)
O3': (14.993,27.207,-0.945)
Image (generated by PyMOL):