Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3GOT:A20:A47
Extra
PDB:
ATOM 1 O3' U A 19 -45.156 -15.655 16.770 1.00 29.65 O
ATOM 2 P A A 20 -46.269 -15.002 17.734 1.00 30.06 P
ATOM 3 OP1 A A 20 -45.821 -15.404 19.111 1.00 30.01 O
ATOM 4 OP2 A A 20 -47.641 -15.289 17.293 1.00 29.56 O
ATOM 5 O5' A A 20 -46.011 -13.462 17.513 1.00 27.22 O
ATOM 6 C5' A A 20 -44.828 -12.849 17.992 1.00 26.43 C
ATOM 7 C4' A A 20 -44.926 -11.357 17.783 1.00 25.73 C
ATOM 8 O4' A A 20 -44.768 -11.082 16.369 1.00 26.88 O
ATOM 9 C3' A A 20 -46.242 -10.728 18.187 1.00 26.16 C
ATOM 10 O3' A A 20 -45.940 -9.491 18.769 1.00 25.68 O
ATOM 11 C2' A A 20 -47.018 -10.628 16.864 1.00 26.35 C
ATOM 12 O2' A A 20 -47.963 -9.571 16.755 1.00 25.75 O
ATOM 13 C1' A A 20 -45.899 -10.402 15.854 1.00 25.71 C
ATOM 14 N9 A A 20 -46.237 -11.026 14.568 1.00 27.34 N
ATOM 15 C8 A A 20 -45.952 -12.327 14.201 1.00 28.68 C
ATOM 16 N7 A A 20 -46.404 -12.662 13.003 1.00 28.19 N
ATOM 17 C5 A A 20 -47.024 -11.510 12.555 1.00 29.24 C
ATOM 18 C6 A A 20 -47.701 -11.220 11.368 1.00 28.64 C
ATOM 19 N6 A A 20 -47.890 -12.124 10.384 1.00 29.39 N
ATOM 20 N1 A A 20 -48.177 -9.959 11.213 1.00 30.63 N
ATOM 21 C2 A A 20 -47.974 -9.056 12.203 1.00 31.51 C
ATOM 22 N3 A A 20 -47.355 -9.217 13.382 1.00 29.21 N
ATOM 23 C4 A A 20 -46.906 -10.478 13.503 1.00 29.21 C
ATOM 24 P U A 21 -46.008 -9.345 20.380 1.00 27.02 P
ATOM 25 OP1 U A 21 -47.279 -9.981 20.757 1.00 25.60 O
ATOM 26 OP2 U A 21 -45.813 -7.892 20.643 1.00 27.77 O
ATOM 27 O5' U A 21 -44.764 -10.176 20.923 1.00 25.70 O
TER
ATOM 1 O3' C B 46 -47.138 -11.893 5.939 1.00 33.62 O
ATOM 2 P G B 47 -48.709 -11.550 5.881 1.00 36.53 P
ATOM 3 OP1 G B 47 -49.285 -12.145 4.641 1.00 37.88 O
ATOM 4 OP2 G B 47 -48.941 -10.128 6.167 1.00 34.75 O
ATOM 5 O5' G B 47 -49.305 -12.391 7.083 1.00 34.89 O
ATOM 6 C5' G B 47 -50.705 -12.450 7.261 1.00 39.39 C
ATOM 7 C4' G B 47 -51.034 -13.105 8.575 1.00 41.27 C
ATOM 8 O4' G B 47 -50.826 -12.146 9.645 1.00 41.62 O
ATOM 9 C3' G B 47 -52.479 -13.540 8.715 1.00 43.72 C
ATOM 10 O3' G B 47 -52.528 -14.656 9.595 1.00 46.37 O
ATOM 11 C2' G B 47 -53.138 -12.303 9.305 1.00 43.13 C
ATOM 12 O2' G B 47 -54.347 -12.606 9.952 1.00 43.99 O
ATOM 13 C1' G B 47 -52.055 -11.850 10.281 1.00 41.44 C
ATOM 14 N9 G B 47 -52.030 -10.433 10.634 1.00 40.81 N
ATOM 15 C8 G B 47 -52.397 -9.349 9.862 1.00 40.47 C
ATOM 16 N7 G B 47 -52.230 -8.203 10.479 1.00 40.07 N
ATOM 17 C5 G B 47 -51.737 -8.556 11.734 1.00 39.34 C
ATOM 18 C6 G B 47 -51.371 -7.745 12.845 1.00 39.72 C
ATOM 19 O6 G B 47 -51.425 -6.500 12.948 1.00 38.62 O
ATOM 20 N1 G B 47 -50.906 -8.524 13.919 1.00 38.21 N
ATOM 21 C2 G B 47 -50.819 -9.892 13.928 1.00 37.28 C
ATOM 22 N2 G B 47 -50.381 -10.465 15.075 1.00 33.57 N
ATOM 23 N3 G B 47 -51.150 -10.654 12.895 1.00 38.03 N
ATOM 24 C4 G B 47 -51.601 -9.924 11.843 1.00 39.77 C
ATOM 25 P U B 48 -53.084 -16.046 9.052 1.00 48.65 P
ATOM 26 OP1 U B 48 -52.978 -15.982 7.561 1.00 50.10 O
ATOM 27 OP2 U B 48 -54.393 -16.262 9.691 1.00 50.07 O
ATOM 28 O5' U B 48 -52.098 -17.155 9.617 1.00 48.27 O
TER
ATOM 2 P A A 20 -46.269 -15.002 17.734 1.00 30.06 P
ATOM 3 OP1 A A 20 -45.821 -15.404 19.111 1.00 30.01 O
ATOM 4 OP2 A A 20 -47.641 -15.289 17.293 1.00 29.56 O
ATOM 5 O5' A A 20 -46.011 -13.462 17.513 1.00 27.22 O
ATOM 6 C5' A A 20 -44.828 -12.849 17.992 1.00 26.43 C
ATOM 7 C4' A A 20 -44.926 -11.357 17.783 1.00 25.73 C
ATOM 8 O4' A A 20 -44.768 -11.082 16.369 1.00 26.88 O
ATOM 9 C3' A A 20 -46.242 -10.728 18.187 1.00 26.16 C
ATOM 10 O3' A A 20 -45.940 -9.491 18.769 1.00 25.68 O
ATOM 11 C2' A A 20 -47.018 -10.628 16.864 1.00 26.35 C
ATOM 12 O2' A A 20 -47.963 -9.571 16.755 1.00 25.75 O
ATOM 13 C1' A A 20 -45.899 -10.402 15.854 1.00 25.71 C
ATOM 14 N9 A A 20 -46.237 -11.026 14.568 1.00 27.34 N
ATOM 15 C8 A A 20 -45.952 -12.327 14.201 1.00 28.68 C
ATOM 16 N7 A A 20 -46.404 -12.662 13.003 1.00 28.19 N
ATOM 17 C5 A A 20 -47.024 -11.510 12.555 1.00 29.24 C
ATOM 18 C6 A A 20 -47.701 -11.220 11.368 1.00 28.64 C
ATOM 19 N6 A A 20 -47.890 -12.124 10.384 1.00 29.39 N
ATOM 20 N1 A A 20 -48.177 -9.959 11.213 1.00 30.63 N
ATOM 21 C2 A A 20 -47.974 -9.056 12.203 1.00 31.51 C
ATOM 22 N3 A A 20 -47.355 -9.217 13.382 1.00 29.21 N
ATOM 23 C4 A A 20 -46.906 -10.478 13.503 1.00 29.21 C
ATOM 24 P U A 21 -46.008 -9.345 20.380 1.00 27.02 P
ATOM 25 OP1 U A 21 -47.279 -9.981 20.757 1.00 25.60 O
ATOM 26 OP2 U A 21 -45.813 -7.892 20.643 1.00 27.77 O
ATOM 27 O5' U A 21 -44.764 -10.176 20.923 1.00 25.70 O
TER
ATOM 1 O3' C B 46 -47.138 -11.893 5.939 1.00 33.62 O
ATOM 2 P G B 47 -48.709 -11.550 5.881 1.00 36.53 P
ATOM 3 OP1 G B 47 -49.285 -12.145 4.641 1.00 37.88 O
ATOM 4 OP2 G B 47 -48.941 -10.128 6.167 1.00 34.75 O
ATOM 5 O5' G B 47 -49.305 -12.391 7.083 1.00 34.89 O
ATOM 6 C5' G B 47 -50.705 -12.450 7.261 1.00 39.39 C
ATOM 7 C4' G B 47 -51.034 -13.105 8.575 1.00 41.27 C
ATOM 8 O4' G B 47 -50.826 -12.146 9.645 1.00 41.62 O
ATOM 9 C3' G B 47 -52.479 -13.540 8.715 1.00 43.72 C
ATOM 10 O3' G B 47 -52.528 -14.656 9.595 1.00 46.37 O
ATOM 11 C2' G B 47 -53.138 -12.303 9.305 1.00 43.13 C
ATOM 12 O2' G B 47 -54.347 -12.606 9.952 1.00 43.99 O
ATOM 13 C1' G B 47 -52.055 -11.850 10.281 1.00 41.44 C
ATOM 14 N9 G B 47 -52.030 -10.433 10.634 1.00 40.81 N
ATOM 15 C8 G B 47 -52.397 -9.349 9.862 1.00 40.47 C
ATOM 16 N7 G B 47 -52.230 -8.203 10.479 1.00 40.07 N
ATOM 17 C5 G B 47 -51.737 -8.556 11.734 1.00 39.34 C
ATOM 18 C6 G B 47 -51.371 -7.745 12.845 1.00 39.72 C
ATOM 19 O6 G B 47 -51.425 -6.500 12.948 1.00 38.62 O
ATOM 20 N1 G B 47 -50.906 -8.524 13.919 1.00 38.21 N
ATOM 21 C2 G B 47 -50.819 -9.892 13.928 1.00 37.28 C
ATOM 22 N2 G B 47 -50.381 -10.465 15.075 1.00 33.57 N
ATOM 23 N3 G B 47 -51.150 -10.654 12.895 1.00 38.03 N
ATOM 24 C4 G B 47 -51.601 -9.924 11.843 1.00 39.77 C
ATOM 25 P U B 48 -53.084 -16.046 9.052 1.00 48.65 P
ATOM 26 OP1 U B 48 -52.978 -15.982 7.561 1.00 50.10 O
ATOM 27 OP2 U B 48 -54.393 -16.262 9.691 1.00 50.07 O
ATOM 28 O5' U B 48 -52.098 -17.155 9.617 1.00 48.27 O
TER
Atoms:
OP1: (-45.821,-15.404,19.111)
OP2: (-47.641,-15.289,17.293)
C3': (-46.242,-10.728,18.187)
C1': (-45.899,-10.402,15.854)
C5': (-44.828,-12.849,17.992)
O4': (-44.768,-11.082,16.369)
C8: (-45.952,-12.327,14.201)
O2': (-47.963,-9.571,16.755)
C6: (-47.701,-11.220,11.368)
C5: (-47.024,-11.510,12.555)
C4: (-46.906,-10.478,13.503)
P: (-46.269,-15.002,17.734)
C4': (-44.926,-11.357,17.783)
C2': (-47.018,-10.628,16.864)
C2: (-47.974,-9.056,12.203)
N1: (-48.177,-9.959,11.213)
N3: (-47.355,-9.217,13.382)
N6: (-47.890,-12.124,10.384)
N7: (-46.404,-12.662,13.003)
N9: (-46.237,-11.026,14.568)
O5': (-46.011,-13.462,17.513)
O3': (-45.940,-9.491,18.769)
OP2: (-47.641,-15.289,17.293)
C3': (-46.242,-10.728,18.187)
C1': (-45.899,-10.402,15.854)
C5': (-44.828,-12.849,17.992)
O4': (-44.768,-11.082,16.369)
C8: (-45.952,-12.327,14.201)
O2': (-47.963,-9.571,16.755)
C6: (-47.701,-11.220,11.368)
C5: (-47.024,-11.510,12.555)
C4: (-46.906,-10.478,13.503)
P: (-46.269,-15.002,17.734)
C4': (-44.926,-11.357,17.783)
C2': (-47.018,-10.628,16.864)
C2: (-47.974,-9.056,12.203)
N1: (-48.177,-9.959,11.213)
N3: (-47.355,-9.217,13.382)
N6: (-47.890,-12.124,10.384)
N7: (-46.404,-12.662,13.003)
N9: (-46.237,-11.026,14.568)
O5': (-46.011,-13.462,17.513)
O3': (-45.940,-9.491,18.769)
OP1: (-49.285,-12.145,4.641)
OP2: (-48.941,-10.128,6.167)
C3': (-52.479,-13.540,8.715)
C1': (-52.055,-11.850,10.281)
C5': (-50.705,-12.450,7.261)
O6: (-51.425,-6.500,12.948)
O4': (-50.826,-12.146,9.645)
C8: (-52.397,-9.349,9.862)
C2: (-50.819,-9.892,13.928)
C6: (-51.371,-7.745,12.845)
C5: (-51.737,-8.556,11.734)
C4: (-51.601,-9.924,11.843)
P: (-48.709,-11.550,5.881)
C4': (-51.034,-13.105,8.575)
C2': (-53.138,-12.303,9.305)
O2': (-54.347,-12.606,9.952)
N1: (-50.906,-8.524,13.919)
N2: (-50.381,-10.465,15.075)
N3: (-51.150,-10.654,12.895)
N7: (-52.230,-8.203,10.479)
N9: (-52.030,-10.433,10.634)
O5': (-49.305,-12.391,7.083)
O3': (-52.528,-14.656,9.595)
OP2: (-48.941,-10.128,6.167)
C3': (-52.479,-13.540,8.715)
C1': (-52.055,-11.850,10.281)
C5': (-50.705,-12.450,7.261)
O6: (-51.425,-6.500,12.948)
O4': (-50.826,-12.146,9.645)
C8: (-52.397,-9.349,9.862)
C2: (-50.819,-9.892,13.928)
C6: (-51.371,-7.745,12.845)
C5: (-51.737,-8.556,11.734)
C4: (-51.601,-9.924,11.843)
P: (-48.709,-11.550,5.881)
C4': (-51.034,-13.105,8.575)
C2': (-53.138,-12.303,9.305)
O2': (-54.347,-12.606,9.952)
N1: (-50.906,-8.524,13.919)
N2: (-50.381,-10.465,15.075)
N3: (-51.150,-10.654,12.895)
N7: (-52.230,-8.203,10.479)
N9: (-52.030,-10.433,10.634)
O5': (-49.305,-12.391,7.083)
O3': (-52.528,-14.656,9.595)
Image (generated by PyMOL):