Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02024:02023
Extra
PDB:
ATOM 1 O3' C A2023 33.407 116.579 106.339 1.00 41.82 O
ATOM 2 P U A2024 32.420 117.067 107.504 1.00 43.22 P
ATOM 3 OP1 U A2024 31.090 116.458 107.199 1.00 43.54 O
ATOM 4 OP2 U A2024 32.547 118.541 107.657 1.00 43.09 O
ATOM 5 O5' U A2024 32.991 116.383 108.817 1.00 39.07 O
ATOM 6 C5' U A2024 32.770 114.996 109.056 1.00 40.45 C
ATOM 7 C4' U A2024 33.275 114.621 110.417 1.00 40.12 C
ATOM 8 O4' U A2024 34.719 114.579 110.417 1.00 40.75 O
ATOM 9 C3' U A2024 32.928 115.595 111.521 1.00 39.41 C
ATOM 10 O3' U A2024 31.620 115.357 111.994 1.00 41.52 O
ATOM 11 C2' U A2024 33.985 115.265 112.555 1.00 39.67 C
ATOM 12 O2' U A2024 33.691 114.037 113.183 1.00 39.79 O
ATOM 13 C1' U A2024 35.207 115.054 111.662 1.00 40.59 C
ATOM 14 N1 U A2024 35.982 116.284 111.412 1.00 40.85 N
ATOM 15 C2 U A2024 36.864 116.712 112.388 1.00 40.04 C
ATOM 16 O2 U A2024 37.021 116.132 113.444 1.00 39.95 O
ATOM 17 N3 U A2024 37.562 117.849 112.073 1.00 40.96 N
ATOM 18 C4 U A2024 37.479 118.583 110.906 1.00 41.88 C
ATOM 19 O4 U A2024 38.238 119.540 110.735 1.00 42.30 O
ATOM 20 C5 U A2024 36.542 118.086 109.957 1.00 41.14 C
ATOM 21 C6 U A2024 35.842 116.987 110.233 1.00 41.02 C
ATOM 22 P G A2025 30.792 116.545 112.693 1.00 44.16 P
ATOM 23 OP1 G A2025 29.446 115.967 112.936 1.00 45.02 O
ATOM 24 OP2 G A2025 30.922 117.813 111.924 1.00 42.55 O
ATOM 25 O5' G A2025 31.515 116.731 114.096 1.00 42.07 O
TER
ATOM 1 O3' U B2022 35.539 122.001 104.310 1.00 41.14 O
ATOM 2 P C B2023 34.648 121.153 105.326 1.00 41.38 P
ATOM 3 OP1 C B2023 33.275 121.129 104.782 1.00 43.10 O
ATOM 4 OP2 C B2023 34.892 121.716 106.679 1.00 39.90 O
ATOM 5 O5' C B2023 35.279 119.695 105.265 1.00 39.65 O
ATOM 6 C5' C B2023 34.784 118.699 104.350 1.00 40.80 C
ATOM 7 C4' C B2023 35.135 117.311 104.849 1.00 40.57 C
ATOM 8 O4' C B2023 36.567 117.093 104.781 1.00 37.78 O
ATOM 9 C3' C B2023 34.750 117.058 106.292 1.00 40.48 C
ATOM 10 O3' C B2023 33.407 116.579 106.339 1.00 41.82 O
ATOM 11 C2' C B2023 35.775 116.025 106.747 1.00 39.09 C
ATOM 12 O2' C B2023 35.438 114.709 106.370 1.00 39.86 O
ATOM 13 C1' C B2023 37.011 116.448 105.953 1.00 38.68 C
ATOM 14 N1 C B2023 37.950 117.355 106.645 1.00 40.03 N
ATOM 15 C2 C B2023 38.716 116.867 107.699 1.00 39.50 C
ATOM 16 O2 C B2023 38.569 115.688 108.054 1.00 37.38 O
ATOM 17 N3 C B2023 39.598 117.694 108.307 1.00 39.75 N
ATOM 18 C4 C B2023 39.721 118.959 107.900 1.00 39.33 C
ATOM 19 N4 C B2023 40.598 119.741 108.523 1.00 40.95 N
ATOM 20 C5 C B2023 38.950 119.481 106.839 1.00 39.52 C
ATOM 21 C6 C B2023 38.083 118.657 106.246 1.00 41.02 C
ATOM 22 P U B2024 32.420 117.067 107.504 1.00 43.22 P
ATOM 23 OP1 U B2024 31.090 116.458 107.199 1.00 43.54 O
ATOM 24 OP2 U B2024 32.547 118.541 107.657 1.00 43.09 O
ATOM 25 O5' U B2024 32.991 116.383 108.817 1.00 39.07 O
TER
ATOM 2 P U A2024 32.420 117.067 107.504 1.00 43.22 P
ATOM 3 OP1 U A2024 31.090 116.458 107.199 1.00 43.54 O
ATOM 4 OP2 U A2024 32.547 118.541 107.657 1.00 43.09 O
ATOM 5 O5' U A2024 32.991 116.383 108.817 1.00 39.07 O
ATOM 6 C5' U A2024 32.770 114.996 109.056 1.00 40.45 C
ATOM 7 C4' U A2024 33.275 114.621 110.417 1.00 40.12 C
ATOM 8 O4' U A2024 34.719 114.579 110.417 1.00 40.75 O
ATOM 9 C3' U A2024 32.928 115.595 111.521 1.00 39.41 C
ATOM 10 O3' U A2024 31.620 115.357 111.994 1.00 41.52 O
ATOM 11 C2' U A2024 33.985 115.265 112.555 1.00 39.67 C
ATOM 12 O2' U A2024 33.691 114.037 113.183 1.00 39.79 O
ATOM 13 C1' U A2024 35.207 115.054 111.662 1.00 40.59 C
ATOM 14 N1 U A2024 35.982 116.284 111.412 1.00 40.85 N
ATOM 15 C2 U A2024 36.864 116.712 112.388 1.00 40.04 C
ATOM 16 O2 U A2024 37.021 116.132 113.444 1.00 39.95 O
ATOM 17 N3 U A2024 37.562 117.849 112.073 1.00 40.96 N
ATOM 18 C4 U A2024 37.479 118.583 110.906 1.00 41.88 C
ATOM 19 O4 U A2024 38.238 119.540 110.735 1.00 42.30 O
ATOM 20 C5 U A2024 36.542 118.086 109.957 1.00 41.14 C
ATOM 21 C6 U A2024 35.842 116.987 110.233 1.00 41.02 C
ATOM 22 P G A2025 30.792 116.545 112.693 1.00 44.16 P
ATOM 23 OP1 G A2025 29.446 115.967 112.936 1.00 45.02 O
ATOM 24 OP2 G A2025 30.922 117.813 111.924 1.00 42.55 O
ATOM 25 O5' G A2025 31.515 116.731 114.096 1.00 42.07 O
TER
ATOM 1 O3' U B2022 35.539 122.001 104.310 1.00 41.14 O
ATOM 2 P C B2023 34.648 121.153 105.326 1.00 41.38 P
ATOM 3 OP1 C B2023 33.275 121.129 104.782 1.00 43.10 O
ATOM 4 OP2 C B2023 34.892 121.716 106.679 1.00 39.90 O
ATOM 5 O5' C B2023 35.279 119.695 105.265 1.00 39.65 O
ATOM 6 C5' C B2023 34.784 118.699 104.350 1.00 40.80 C
ATOM 7 C4' C B2023 35.135 117.311 104.849 1.00 40.57 C
ATOM 8 O4' C B2023 36.567 117.093 104.781 1.00 37.78 O
ATOM 9 C3' C B2023 34.750 117.058 106.292 1.00 40.48 C
ATOM 10 O3' C B2023 33.407 116.579 106.339 1.00 41.82 O
ATOM 11 C2' C B2023 35.775 116.025 106.747 1.00 39.09 C
ATOM 12 O2' C B2023 35.438 114.709 106.370 1.00 39.86 O
ATOM 13 C1' C B2023 37.011 116.448 105.953 1.00 38.68 C
ATOM 14 N1 C B2023 37.950 117.355 106.645 1.00 40.03 N
ATOM 15 C2 C B2023 38.716 116.867 107.699 1.00 39.50 C
ATOM 16 O2 C B2023 38.569 115.688 108.054 1.00 37.38 O
ATOM 17 N3 C B2023 39.598 117.694 108.307 1.00 39.75 N
ATOM 18 C4 C B2023 39.721 118.959 107.900 1.00 39.33 C
ATOM 19 N4 C B2023 40.598 119.741 108.523 1.00 40.95 N
ATOM 20 C5 C B2023 38.950 119.481 106.839 1.00 39.52 C
ATOM 21 C6 C B2023 38.083 118.657 106.246 1.00 41.02 C
ATOM 22 P U B2024 32.420 117.067 107.504 1.00 43.22 P
ATOM 23 OP1 U B2024 31.090 116.458 107.199 1.00 43.54 O
ATOM 24 OP2 U B2024 32.547 118.541 107.657 1.00 43.09 O
ATOM 25 O5' U B2024 32.991 116.383 108.817 1.00 39.07 O
TER
Atoms:
C4: (37.479,118.583,110.906)
N3: (37.562,117.849,112.073)
OP1: (31.090,116.458,107.199)
OP2: (32.547,118.541,107.657)
C2: (36.864,116.712,112.388)
C1': (35.207,115.054,111.662)
C3': (32.928,115.595,111.521)
O5': (32.991,116.383,108.817)
O4': (34.719,114.579,110.417)
C5': (32.770,114.996,109.056)
P: (32.420,117.067,107.504)
C4': (33.275,114.621,110.417)
C2': (33.985,115.265,112.555)
O2': (33.691,114.037,113.183)
N1: (35.982,116.284,111.412)
O4: (38.238,119.540,110.735)
O2: (37.021,116.132,113.444)
C6: (35.842,116.987,110.233)
C5: (36.542,118.086,109.957)
O3': (31.620,115.357,111.994)
N3: (37.562,117.849,112.073)
OP1: (31.090,116.458,107.199)
OP2: (32.547,118.541,107.657)
C2: (36.864,116.712,112.388)
C1': (35.207,115.054,111.662)
C3': (32.928,115.595,111.521)
O5': (32.991,116.383,108.817)
O4': (34.719,114.579,110.417)
C5': (32.770,114.996,109.056)
P: (32.420,117.067,107.504)
C4': (33.275,114.621,110.417)
C2': (33.985,115.265,112.555)
O2': (33.691,114.037,113.183)
N1: (35.982,116.284,111.412)
O4: (38.238,119.540,110.735)
O2: (37.021,116.132,113.444)
C6: (35.842,116.987,110.233)
C5: (36.542,118.086,109.957)
O3': (31.620,115.357,111.994)
C2: (38.716,116.867,107.699)
OP1: (33.275,121.129,104.782)
OP2: (34.892,121.716,106.679)
C4: (39.721,118.959,107.900)
O5': (35.279,119.695,105.265)
C3': (34.750,117.058,106.292)
C1': (37.011,116.448,105.953)
O4': (36.567,117.093,104.781)
C5': (34.784,118.699,104.350)
P: (34.648,121.153,105.326)
O2: (38.569,115.688,108.054)
C4': (35.135,117.311,104.849)
C2': (35.775,116.025,106.747)
O2': (35.438,114.709,106.370)
N1: (37.950,117.355,106.645)
N3: (39.598,117.694,108.307)
N4: (40.598,119.741,108.523)
C6: (38.083,118.657,106.246)
C5: (38.950,119.481,106.839)
O3': (33.407,116.579,106.339)
OP1: (33.275,121.129,104.782)
OP2: (34.892,121.716,106.679)
C4: (39.721,118.959,107.900)
O5': (35.279,119.695,105.265)
C3': (34.750,117.058,106.292)
C1': (37.011,116.448,105.953)
O4': (36.567,117.093,104.781)
C5': (34.784,118.699,104.350)
P: (34.648,121.153,105.326)
O2: (38.569,115.688,108.054)
C4': (35.135,117.311,104.849)
C2': (35.775,116.025,106.747)
O2': (35.438,114.709,106.370)
N1: (37.950,117.355,106.645)
N3: (39.598,117.694,108.307)
N4: (40.598,119.741,108.523)
C6: (38.083,118.657,106.246)
C5: (38.950,119.481,106.839)
O3': (33.407,116.579,106.339)
Image (generated by PyMOL):