Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YXP:A17:A18
Extra
PDB:
ATOM 1 O3' C A 16 -3.386 -76.221 107.219 1.00 57.09 O
ATOM 2 P A A 17 -4.519 -77.335 107.478 1.00 58.85 P
ATOM 3 OP1 A A 17 -3.888 -78.413 108.270 1.00 59.71 O
ATOM 4 OP2 A A 17 -5.161 -77.659 106.200 1.00 60.93 O
ATOM 5 O5' A A 17 -5.601 -76.616 108.399 1.00 58.32 O
ATOM 6 C5' A A 17 -5.271 -76.201 109.742 1.00 58.44 C
ATOM 7 C4' A A 17 -6.499 -75.667 110.443 1.00 58.64 C
ATOM 8 O4' A A 17 -6.896 -74.404 109.860 1.00 57.82 O
ATOM 9 C3' A A 17 -7.732 -76.536 110.310 1.00 60.00 C
ATOM 10 O3' A A 17 -7.734 -77.573 111.265 1.00 63.75 O
ATOM 11 C2' A A 17 -8.854 -75.545 110.554 1.00 58.64 C
ATOM 12 O2' A A 17 -8.983 -75.241 111.925 1.00 59.26 O
ATOM 13 C1' A A 17 -8.313 -74.313 109.834 1.00 56.91 C
ATOM 14 N9 A A 17 -8.740 -74.209 108.436 1.00 54.22 N
ATOM 15 C8 A A 17 -8.087 -74.675 107.322 1.00 52.50 C
ATOM 16 N7 A A 17 -8.691 -74.388 106.197 1.00 51.25 N
ATOM 17 C5 A A 17 -9.826 -73.697 106.594 1.00 51.75 C
ATOM 18 C6 A A 17 -10.884 -73.112 105.873 1.00 50.70 C
ATOM 19 N6 A A 17 -10.980 -73.127 104.548 1.00 49.95 N
ATOM 20 N1 A A 17 -11.852 -72.499 106.575 1.00 51.13 N
ATOM 21 C2 A A 17 -11.764 -72.480 107.906 1.00 50.54 C
ATOM 22 N3 A A 17 -10.832 -72.987 108.693 1.00 51.09 N
ATOM 23 C4 A A 17 -9.876 -73.589 107.970 1.00 52.40 C
ATOM 24 P G A 18 -8.682 -78.843 111.040 1.00 66.50 P
ATOM 25 OP1 G A 18 -8.384 -79.817 112.119 1.00 65.85 O
ATOM 26 OP2 G A 18 -8.546 -79.248 109.614 1.00 64.76 O
ATOM 27 O5' G A 18 -10.143 -78.274 111.287 1.00 66.27 O
TER
ATOM 1 O3' A B 17 -7.734 -77.573 111.265 1.00 63.75 O
ATOM 2 P G B 18 -8.682 -78.843 111.040 1.00 66.50 P
ATOM 3 OP1 G B 18 -8.384 -79.817 112.119 1.00 65.85 O
ATOM 4 OP2 G B 18 -8.546 -79.248 109.614 1.00 64.76 O
ATOM 5 O5' G B 18 -10.143 -78.274 111.287 1.00 66.27 O
ATOM 6 C5' G B 18 -10.537 -77.866 112.600 1.00 67.14 C
ATOM 7 C4' G B 18 -11.901 -77.243 112.557 1.00 67.51 C
ATOM 8 O4' G B 18 -11.868 -76.089 111.678 1.00 66.49 O
ATOM 9 C3' G B 18 -12.990 -78.126 111.978 1.00 68.63 C
ATOM 10 O3' G B 18 -13.493 -79.014 112.983 1.00 70.63 O
ATOM 11 C2' G B 18 -14.017 -77.093 111.526 1.00 67.44 C
ATOM 12 O2' G B 18 -14.785 -76.603 112.609 1.00 67.23 O
ATOM 13 C1' G B 18 -13.113 -75.964 111.013 1.00 65.67 C
ATOM 14 N9 G B 18 -12.866 -75.979 109.574 1.00 62.26 N
ATOM 15 C8 G B 18 -11.750 -76.455 108.930 1.00 62.14 C
ATOM 16 N7 G B 18 -11.807 -76.321 107.632 1.00 60.39 N
ATOM 17 C5 G B 18 -13.037 -75.725 107.403 1.00 59.42 C
ATOM 18 C6 G B 18 -13.656 -75.343 106.187 1.00 58.27 C
ATOM 19 O6 G B 18 -13.227 -75.464 105.029 1.00 56.30 O
ATOM 20 N1 G B 18 -14.904 -74.772 106.408 1.00 58.06 N
ATOM 21 C2 G B 18 -15.486 -74.599 107.640 1.00 59.02 C
ATOM 22 N2 G B 18 -16.699 -74.031 107.645 1.00 59.12 N
ATOM 23 N3 G B 18 -14.921 -74.955 108.783 1.00 59.28 N
ATOM 24 C4 G B 18 -13.706 -75.507 108.590 1.00 60.89 C
ATOM 25 P C B 19 -14.080 -80.460 112.572 1.00 72.44 P
ATOM 26 OP1 C B 19 -14.237 -81.234 113.834 1.00 72.14 O
ATOM 27 OP2 C B 19 -13.292 -81.028 111.461 1.00 72.39 O
ATOM 28 O5' C B 19 -15.521 -80.128 111.996 1.00 70.00 O
TER
ATOM 2 P A A 17 -4.519 -77.335 107.478 1.00 58.85 P
ATOM 3 OP1 A A 17 -3.888 -78.413 108.270 1.00 59.71 O
ATOM 4 OP2 A A 17 -5.161 -77.659 106.200 1.00 60.93 O
ATOM 5 O5' A A 17 -5.601 -76.616 108.399 1.00 58.32 O
ATOM 6 C5' A A 17 -5.271 -76.201 109.742 1.00 58.44 C
ATOM 7 C4' A A 17 -6.499 -75.667 110.443 1.00 58.64 C
ATOM 8 O4' A A 17 -6.896 -74.404 109.860 1.00 57.82 O
ATOM 9 C3' A A 17 -7.732 -76.536 110.310 1.00 60.00 C
ATOM 10 O3' A A 17 -7.734 -77.573 111.265 1.00 63.75 O
ATOM 11 C2' A A 17 -8.854 -75.545 110.554 1.00 58.64 C
ATOM 12 O2' A A 17 -8.983 -75.241 111.925 1.00 59.26 O
ATOM 13 C1' A A 17 -8.313 -74.313 109.834 1.00 56.91 C
ATOM 14 N9 A A 17 -8.740 -74.209 108.436 1.00 54.22 N
ATOM 15 C8 A A 17 -8.087 -74.675 107.322 1.00 52.50 C
ATOM 16 N7 A A 17 -8.691 -74.388 106.197 1.00 51.25 N
ATOM 17 C5 A A 17 -9.826 -73.697 106.594 1.00 51.75 C
ATOM 18 C6 A A 17 -10.884 -73.112 105.873 1.00 50.70 C
ATOM 19 N6 A A 17 -10.980 -73.127 104.548 1.00 49.95 N
ATOM 20 N1 A A 17 -11.852 -72.499 106.575 1.00 51.13 N
ATOM 21 C2 A A 17 -11.764 -72.480 107.906 1.00 50.54 C
ATOM 22 N3 A A 17 -10.832 -72.987 108.693 1.00 51.09 N
ATOM 23 C4 A A 17 -9.876 -73.589 107.970 1.00 52.40 C
ATOM 24 P G A 18 -8.682 -78.843 111.040 1.00 66.50 P
ATOM 25 OP1 G A 18 -8.384 -79.817 112.119 1.00 65.85 O
ATOM 26 OP2 G A 18 -8.546 -79.248 109.614 1.00 64.76 O
ATOM 27 O5' G A 18 -10.143 -78.274 111.287 1.00 66.27 O
TER
ATOM 1 O3' A B 17 -7.734 -77.573 111.265 1.00 63.75 O
ATOM 2 P G B 18 -8.682 -78.843 111.040 1.00 66.50 P
ATOM 3 OP1 G B 18 -8.384 -79.817 112.119 1.00 65.85 O
ATOM 4 OP2 G B 18 -8.546 -79.248 109.614 1.00 64.76 O
ATOM 5 O5' G B 18 -10.143 -78.274 111.287 1.00 66.27 O
ATOM 6 C5' G B 18 -10.537 -77.866 112.600 1.00 67.14 C
ATOM 7 C4' G B 18 -11.901 -77.243 112.557 1.00 67.51 C
ATOM 8 O4' G B 18 -11.868 -76.089 111.678 1.00 66.49 O
ATOM 9 C3' G B 18 -12.990 -78.126 111.978 1.00 68.63 C
ATOM 10 O3' G B 18 -13.493 -79.014 112.983 1.00 70.63 O
ATOM 11 C2' G B 18 -14.017 -77.093 111.526 1.00 67.44 C
ATOM 12 O2' G B 18 -14.785 -76.603 112.609 1.00 67.23 O
ATOM 13 C1' G B 18 -13.113 -75.964 111.013 1.00 65.67 C
ATOM 14 N9 G B 18 -12.866 -75.979 109.574 1.00 62.26 N
ATOM 15 C8 G B 18 -11.750 -76.455 108.930 1.00 62.14 C
ATOM 16 N7 G B 18 -11.807 -76.321 107.632 1.00 60.39 N
ATOM 17 C5 G B 18 -13.037 -75.725 107.403 1.00 59.42 C
ATOM 18 C6 G B 18 -13.656 -75.343 106.187 1.00 58.27 C
ATOM 19 O6 G B 18 -13.227 -75.464 105.029 1.00 56.30 O
ATOM 20 N1 G B 18 -14.904 -74.772 106.408 1.00 58.06 N
ATOM 21 C2 G B 18 -15.486 -74.599 107.640 1.00 59.02 C
ATOM 22 N2 G B 18 -16.699 -74.031 107.645 1.00 59.12 N
ATOM 23 N3 G B 18 -14.921 -74.955 108.783 1.00 59.28 N
ATOM 24 C4 G B 18 -13.706 -75.507 108.590 1.00 60.89 C
ATOM 25 P C B 19 -14.080 -80.460 112.572 1.00 72.44 P
ATOM 26 OP1 C B 19 -14.237 -81.234 113.834 1.00 72.14 O
ATOM 27 OP2 C B 19 -13.292 -81.028 111.461 1.00 72.39 O
ATOM 28 O5' C B 19 -15.521 -80.128 111.996 1.00 70.00 O
TER
Atoms:
OP1: (-3.888,-78.413,108.270)
OP2: (-5.161,-77.659,106.200)
C3': (-7.732,-76.536,110.310)
C1': (-8.313,-74.313,109.834)
C5': (-5.271,-76.201,109.742)
O4': (-6.896,-74.404,109.860)
C8: (-8.087,-74.675,107.322)
O2': (-8.983,-75.241,111.925)
C6: (-10.884,-73.112,105.873)
C5: (-9.826,-73.697,106.594)
C4: (-9.876,-73.589,107.970)
P: (-4.519,-77.335,107.478)
C4': (-6.499,-75.667,110.443)
C2': (-8.854,-75.545,110.554)
C2: (-11.764,-72.480,107.906)
N1: (-11.852,-72.499,106.575)
N3: (-10.832,-72.987,108.693)
N6: (-10.980,-73.127,104.548)
N7: (-8.691,-74.388,106.197)
N9: (-8.740,-74.209,108.436)
O5': (-5.601,-76.616,108.399)
O3': (-7.734,-77.573,111.265)
OP2: (-5.161,-77.659,106.200)
C3': (-7.732,-76.536,110.310)
C1': (-8.313,-74.313,109.834)
C5': (-5.271,-76.201,109.742)
O4': (-6.896,-74.404,109.860)
C8: (-8.087,-74.675,107.322)
O2': (-8.983,-75.241,111.925)
C6: (-10.884,-73.112,105.873)
C5: (-9.826,-73.697,106.594)
C4: (-9.876,-73.589,107.970)
P: (-4.519,-77.335,107.478)
C4': (-6.499,-75.667,110.443)
C2': (-8.854,-75.545,110.554)
C2: (-11.764,-72.480,107.906)
N1: (-11.852,-72.499,106.575)
N3: (-10.832,-72.987,108.693)
N6: (-10.980,-73.127,104.548)
N7: (-8.691,-74.388,106.197)
N9: (-8.740,-74.209,108.436)
O5': (-5.601,-76.616,108.399)
O3': (-7.734,-77.573,111.265)
OP1: (-8.384,-79.817,112.119)
OP2: (-8.546,-79.248,109.614)
C3': (-12.990,-78.126,111.978)
C1': (-13.113,-75.964,111.013)
C5': (-10.537,-77.866,112.600)
O6: (-13.227,-75.464,105.029)
O4': (-11.868,-76.089,111.678)
C8: (-11.750,-76.455,108.930)
C2: (-15.486,-74.599,107.640)
C6: (-13.656,-75.343,106.187)
C5: (-13.037,-75.725,107.403)
C4: (-13.706,-75.507,108.590)
P: (-8.682,-78.843,111.040)
C4': (-11.901,-77.243,112.557)
C2': (-14.017,-77.093,111.526)
O2': (-14.785,-76.603,112.609)
N1: (-14.904,-74.772,106.408)
N2: (-16.699,-74.031,107.645)
N3: (-14.921,-74.955,108.783)
N7: (-11.807,-76.321,107.632)
N9: (-12.866,-75.979,109.574)
O5': (-10.143,-78.274,111.287)
O3': (-13.493,-79.014,112.983)
OP2: (-8.546,-79.248,109.614)
C3': (-12.990,-78.126,111.978)
C1': (-13.113,-75.964,111.013)
C5': (-10.537,-77.866,112.600)
O6: (-13.227,-75.464,105.029)
O4': (-11.868,-76.089,111.678)
C8: (-11.750,-76.455,108.930)
C2: (-15.486,-74.599,107.640)
C6: (-13.656,-75.343,106.187)
C5: (-13.037,-75.725,107.403)
C4: (-13.706,-75.507,108.590)
P: (-8.682,-78.843,111.040)
C4': (-11.901,-77.243,112.557)
C2': (-14.017,-77.093,111.526)
O2': (-14.785,-76.603,112.609)
N1: (-14.904,-74.772,106.408)
N2: (-16.699,-74.031,107.645)
N3: (-14.921,-74.955,108.783)
N7: (-11.807,-76.321,107.632)
N9: (-12.866,-75.979,109.574)
O5': (-10.143,-78.274,111.287)
O3': (-13.493,-79.014,112.983)
Image (generated by PyMOL):